RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 SULT1C3Q6IMI6 304 aa7.16□□□□□ -1.26
VPS13C-206ENST00000558338 GTF2H2CQ6P1K8 395 aa7.16□□□□□ -1.26
VPS13C-206ENST00000558338 LINGO4Q6UY18 593 aa7.16□□□□□ -1.26
VPS13C-206ENST00000558338 MACC1Q6ZN28 852 aa7.16□□□□□ -1.26
VPS13C-206ENST00000558338 FKBP9P1Q75LS8 142 aa7.16□□□□□ -1.26
VPS13C-206ENST00000558338 GOLGA7Q7Z5G4 137 aa7.16□□□□□ -1.26
VPS13C-206ENST00000558338 DNAJB7Q7Z6W7 309 aaPredicted RBP7.16□□□□□ -1.26
VPS13C-206ENST00000558338 SERPINA9Q86WD7 417 aa7.16□□□□□ -1.26
VPS13C-206ENST00000558338 CARM1Q86X55 608 aa7.16□□□□□ -1.26
VPS13C-206ENST00000558338 TBC1D21Q8IYX1 336 aa7.16□□□□□ -1.26
VPS13C-206ENST00000558338 SLC39A11Q8N1S5 342 aa7.16□□□□□ -1.26
VPS13C-206ENST00000558338 CPXM2Q8N436 756 aa7.16□□□□□ -1.26
VPS13C-206ENST00000558338 SNX31Q8N9S9 440 aa7.16□□□□□ -1.26
VPS13C-206ENST00000558338 METTL6Q8TCB7 284 aa7.16□□□□□ -1.26
VPS13C-206ENST00000558338 HM13Q8TCT9 377 aa7.16□□□□□ -1.26
VPS13C-206ENST00000558338 OSCP1Q8WVF1 389 aa7.16□□□□□ -1.26
VPS13C-206ENST00000558338 CANT1Q8WVQ1 401 aa7.16□□□□□ -1.26
VPS13C-206ENST00000558338 PIH1D2Q8WWB5 315 aa7.16□□□□□ -1.26
VPS13C-206ENST00000558338 MRPS31Q92665 395 aaKnown RBP7.16□□□□□ -1.26
VPS13C-206ENST00000558338 POP5Q969H6 163 aaKnown RBP7.16□□□□□ -1.26
VPS13C-206ENST00000558338 ZNF775Q96BV0 537 aaPredicted RBP7.16□□□□□ -1.26
VPS13C-206ENST00000558338 DGCR14Q96DF8 476 aaKnown RBP7.16□□□□□ -1.26
VPS13C-206ENST00000558338 CENPNQ96H22 339 aaPredicted RBP7.16□□□□□ -1.26
VPS13C-206ENST00000558338 ZBTB18Q99592 522 aa7.16□□□□□ -1.26
VPS13C-206ENST00000558338 SLC30A3Q99726 388 aa7.16□□□□□ -1.26
VPS13C-206ENST00000558338 SLC39A3Q9BRY0 314 aa7.16□□□□□ -1.26
VPS13C-206ENST00000558338 HTATIP2Q9BUP3 242 aa7.16□□□□□ -1.26
VPS13C-206ENST00000558338 ANKRD60Q9BZ19 345 aa7.16□□□□□ -1.26
VPS13C-206ENST00000558338 RNF38Q9H0F5 515 aa7.16□□□□□ -1.26
VPS13C-206ENST00000558338 IL1RL2Q9HB29 575 aa7.16□□□□□ -1.26
VPS13C-206ENST00000558338 SLC52A3Q9NQ40 469 aa7.16□□□□□ -1.26
VPS13C-206ENST00000558338 MRPL17Q9NRX2 175 aaKnown RBP7.16□□□□□ -1.26
VPS13C-206ENST00000558338 CMTM6Q9NX76 183 aa7.16□□□□□ -1.26
VPS13C-206ENST00000558338 UBAP1Q9NZ09 502 aa7.16□□□□□ -1.26
VPS13C-206ENST00000558338 PTTG2Q9NZH5 202 aa7.16□□□□□ -1.26
VPS13C-206ENST00000558338 FCF1Q9Y324 198 aaKnown RBP7.16□□□□□ -1.26
VPS13C-206ENST00000558338 TIMM22Q9Y584 194 aa7.16□□□□□ -1.26
VPS13C-206ENST00000558338 ANGPTL3Q9Y5C1 460 aa7.16□□□□□ -1.26
VPS13C-206ENST00000558338 SCN5AQ14524 2016 aa7.16□□□□□ -1.26
VPS13C-206ENST00000558338 OBSL1O75147 1896 aa7.16□□□□□ -1.26
VPS13C-206ENST00000558338 GLYATL1P3A0A0U1RQE8 302 aa7.15□□□□□ -1.26
VPS13C-206ENST00000558338 C1orf232A0A0U1RR37 186 aa7.15□□□□□ -1.26
VPS13C-206ENST00000558338 A0A1W2PQ67 120 aa7.15□□□□□ -1.26
VPS13C-206ENST00000558338 ARNTLO00327 626 aa7.15□□□□□ -1.26
VPS13C-206ENST00000558338 SLC28A1O00337 649 aa7.15□□□□□ -1.26
VPS13C-206ENST00000558338 FKTNO75072 461 aa7.15□□□□□ -1.26
VPS13C-206ENST00000558338 TULP3O75386 442 aa7.15□□□□□ -1.26
VPS13C-206ENST00000558338 GMNNO75496 209 aa7.15□□□□□ -1.26
VPS13C-206ENST00000558338 TIPRLO75663 272 aa7.15□□□□□ -1.26
VPS13C-206ENST00000558338 BAIAP3O94812 1187 aa7.15□□□□□ -1.26
VPS13C-206ENST00000558338 ARHGEF15O94989 841 aa7.15□□□□□ -1.26
VPS13C-206ENST00000558338 CSPG5O95196 566 aa7.15□□□□□ -1.26
VPS13C-206ENST00000558338 HOXB6P17509 224 aaKnown RBP7.15□□□□□ -1.26
VPS13C-206ENST00000558338 JAK1P23458 1154 aa7.15□□□□□ -1.26
VPS13C-206ENST00000558338 GRIA2P42262 883 aa7.15□□□□□ -1.26
VPS13C-206ENST00000558338 GSK3BP49841 420 aa7.15□□□□□ -1.26
VPS13C-206ENST00000558338 DIO3P55073 304 aa7.15□□□□□ -1.26
VPS13C-206ENST00000558338 ERVPABLB-1P60509 514 aa7.15□□□□□ -1.26
VPS13C-206ENST00000558338 TUBA4AP68366 448 aa7.15□□□□□ -1.26
VPS13C-206ENST00000558338 NFATC2Q13469 925 aa7.15□□□□□ -1.26
VPS13C-206ENST00000558338 FXNQ16595 210 aa7.15□□□□□ -1.26
VPS13C-206ENST00000558338 NRF1Q16656 503 aa7.15□□□□□ -1.26
VPS13C-206ENST00000558338 ATXN7L2Q5T6C5 722 aaPredicted RBP7.15□□□□□ -1.26
VPS13C-206ENST00000558338 HMBOX1Q6NT76 420 aa7.15□□□□□ -1.26
VPS13C-206ENST00000558338 SBSNQ6UWP8 590 aa7.15□□□□□ -1.26
VPS13C-206ENST00000558338 ANKRD33Q7Z3H0 272 aa7.15□□□□□ -1.26
VPS13C-206ENST00000558338 DDX53Q86TM3 631 aaKnown RBP7.15□□□□□ -1.26
VPS13C-206ENST00000558338 HID1Q8IV36 788 aa7.15□□□□□ -1.26
VPS13C-206ENST00000558338 FAM9CQ8IZT9 166 aa7.15□□□□□ -1.26
VPS13C-206ENST00000558338 TCAIMQ8N3R3 496 aa7.15□□□□□ -1.26
VPS13C-206ENST00000558338 ZBTB2Q8N680 514 aa7.15□□□□□ -1.26
VPS13C-206ENST00000558338 CDYL2Q8N8U2 506 aa7.15□□□□□ -1.26
VPS13C-206ENST00000558338 GLB1L3Q8NCI6 653 aaPredicted RBP7.15□□□□□ -1.26
VPS13C-206ENST00000558338 PAPD5Q8NDF8 572 aaKnown RBP7.15□□□□□ -1.26
VPS13C-206ENST00000558338 TRPV3Q8NET8 790 aa7.15□□□□□ -1.26
VPS13C-206ENST00000558338 HLA-CQ95604 372 aa7.15□□□□□ -1.26
VPS13C-206ENST00000558338 ULK4Q96C45 1275 aa7.15□□□□□ -1.26
VPS13C-206ENST00000558338 ALG14Q96F25 216 aa7.15□□□□□ -1.26
VPS13C-206ENST00000558338 SCLYQ96I15 445 aa7.15□□□□□ -1.26
VPS13C-206ENST00000558338 MAGEB10Q96LZ2 347 aaPredicted RBP7.15□□□□□ -1.26
VPS13C-206ENST00000558338 LYSMD1Q96S90 227 aa7.15□□□□□ -1.26
VPS13C-206ENST00000558338 TMEM79Q9BSE2 394 aa7.15□□□□□ -1.26
VPS13C-206ENST00000558338 LRRC3Q9BY71 257 aa7.15□□□□□ -1.26
VPS13C-206ENST00000558338 SEMA6AQ9H2E6 1030 aa7.15□□□□□ -1.26
VPS13C-206ENST00000558338 ASB8Q9H765 288 aa7.15□□□□□ -1.26
VPS13C-206ENST00000558338 NOL11Q9H8H0 719 aaKnown RBP7.15□□□□□ -1.26
VPS13C-206ENST00000558338 RDH14Q9HBH5 336 aa7.15□□□□□ -1.26
VPS13C-206ENST00000558338 AGPAT4Q9NRZ5 378 aa7.15□□□□□ -1.26
VPS13C-206ENST00000558338 SMPD4Q9NXE4 827 aa7.15□□□□□ -1.26
VPS13C-206ENST00000558338 KCTD5Q9NXV2 234 aa7.15□□□□□ -1.26
VPS13C-206ENST00000558338 TUBA8Q9NY65 449 aaPredicted RBP7.15□□□□□ -1.26
VPS13C-206ENST00000558338 WWOXQ9NZC7 414 aa7.15□□□□□ -1.26
VPS13C-206ENST00000558338 GALPQ9UBC7 116 aa7.15□□□□□ -1.26
VPS13C-206ENST00000558338 OPTCQ9UBM4 332 aa7.15□□□□□ -1.26
VPS13C-206ENST00000558338 GIMAP2Q9UG22 337 aa7.15□□□□□ -1.26
VPS13C-206ENST00000558338 TRPS1Q9UHF7 1281 aa7.15□□□□□ -1.26
VPS13C-206ENST00000558338 CRLS1Q9UJA2 301 aa7.15□□□□□ -1.26
VPS13C-206ENST00000558338 ANAPC2Q9UJX6 822 aa7.15□□□□□ -1.26
VPS13C-206ENST00000558338 AURKCQ9UQB9 309 aa7.15□□□□□ -1.26
VPS13C-206ENST00000558338 EIF3LQ9Y262 564 aaKnown RBP7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms