RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	COPS8	Q99627	209 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	BARD1	Q99728	777 aa	Known RBP	4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	SLC29A1	Q99808	456 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	WDR83	Q9BRX9	315 aa	Known RBP	4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	SGK2	Q9HBY8	427 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	SIX4	Q9UIU6	781 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	CORO2B	Q9UQ03	480 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	KCNH4	Q9UQ05	1017 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	ANGPT4	Q9Y264	503 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	ERGIC3	Q9Y282	383 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	PRKAB1	Q9Y478	270 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	TRPV2	Q9Y5S1	764 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	FOCAD	Q5VW36	1801 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	OR6C70	A6NIJ9	312 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005		H7C4K7	107 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	B4GAT1	O43505	415 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	KPNA6	O60684	536 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	SCEL	O95171	688 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	GLUD1	P00367	558 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	EPB42	P16452	691 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	OPRL1	P41146	370 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	ACADVL	P49748	655 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	VEPH1	Q14D04	833 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	SYT16	Q17RD7	645 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	FAM214A	Q32MH5	1076 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	SYCE2	Q6PIF2	218 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	C15orf39	Q6ZRI6	1047 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	CLEC20A	Q6ZU45	233 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	KRTCAP2	Q8N6L1	136 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	C2orf69	Q8N8R5	385 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	ZNF420	Q8TAQ5	688 aa	Predicted RBP	4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	TRPM4	Q8TD43	1214 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	TSSK3	Q96PN8	268 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	NTPCR	Q9BSD7	190 aa	Known RBP	4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	DCSTAMP	Q9H295	470 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	CD320	Q9NPF0	282 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	MOCS1	Q9NZB8	636 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	GMPR2	Q9P2T1	348 aa	Known RBP	4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	AP3M1	Q9Y2T2	418 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	PEX16	Q9Y5Y5	336 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	SMIM28	A0A1B0GU29	152 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	YJEFN3	A6XGL0	299 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	IQCF5	A8MTL0	148 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005		A8MU76	341 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005		J3KR12	359 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	XPNPEP2	O43895	674 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	ALDH1A2	O94788	518 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	PRKD3	O94806	890 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	VIP	P01282	170 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	ITGB1	P05556	798 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	RORC	P51449	518 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	EEFSEC	P57772	596 aa	Known RBP	4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	RPS3A	P61247	264 aa	Known RBP	4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	FPGS	Q05932	587 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	CAMK2G	Q13555	558 aa	Predicted RBP	4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	ACOX1	Q15067	660 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	ALF	Q53S48	1182 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	FAM171A1	Q5VUB5	890 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	FAM219B	Q5XKK7	198 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	HMBOX1	Q6NT76	420 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	TTC23L	Q6PF05	361 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	FAM180A	Q6UWF9	173 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	LINGO4	Q6UY18	593 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	DCDC5	Q6ZRR9	648 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	TPGS1	Q6ZTW0	290 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	UBE2R2	Q712K3	238 aa	Predicted RBP	4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	VN1R5	Q7Z5H4	357 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	GPR65	Q8IYL9	337 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	C2orf73	Q8N5S3	287 aa	Predicted RBP	4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	PHF10	Q8WUB8	498 aa	Known RBP	4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	RPL10L	Q96L21	214 aa	Known RBP	4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	RANBP9	Q96S59	729 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	LRRC3	Q9BY71	257 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	TPK1	Q9H3S4	243 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	SMPD4	Q9NXE4	827 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	ACTR3B	Q9P1U1	418 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	TBC1D14	Q9P2M4	693 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	AGO1	Q9UL18	857 aa	Known RBP	4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	GTF2A1L	Q9UNN4	478 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	ZNF232	Q9UNY5	417 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	PCDHGB5	Q9Y5G0	923 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	C12orf71	A8MTZ7	269 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	CASK	O14936	926 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	MSC	O60682	206 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	NOS1AP	O75052	506 aa	Predicted RBP	4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	GABBR2	O75899	941 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	TRBC1	P01850	177 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	C8B	P07358	591 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	G6PD	P11413	515 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	PROZ	P22891	400 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	APLP1	P51693	650 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	NUDT6	P53370	316 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	RAB25	P57735	213 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	C1QTNF8	P60827	252 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	MRPS6	P82932	125 aa	Known RBP	4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	PTS	Q03393	145 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	RAPSN	Q13702	412 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	ZNF181	Q2M3W8	571 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	GCNT6	Q5T4J0	391 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	ARMC12	Q5T9G4	340 aa		4.91	□□□□□ -1.62

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