RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 ACSL5Q9ULC5 683 aa17.13■□□□□ 0.33
SHMT2-225ENST00000556798 KLHL33A6NCF5 533 aa17.12■□□□□ 0.33
SHMT2-225ENST00000556798 OR5K4A6NMS3 321 aa17.12■□□□□ 0.33
SHMT2-225ENST00000556798 F8W8V4 182 aa17.12■□□□□ 0.33
SHMT2-225ENST00000556798 PDHA2P29803 388 aa17.12■□□□□ 0.33
SHMT2-225ENST00000556798 ECHS1P30084 290 aa17.12■□□□□ 0.33
SHMT2-225ENST00000556798 SLC19A1P41440 591 aa17.12■□□□□ 0.33
SHMT2-225ENST00000556798 MAGEA4P43358 317 aa17.12■□□□□ 0.33
SHMT2-225ENST00000556798 FASLGP48023 281 aa17.12■□□□□ 0.33
SHMT2-225ENST00000556798 UBE2IP63279 158 aaKnown RBP17.12■□□□□ 0.33
SHMT2-225ENST00000556798 INSM1Q01101 510 aaPredicted RBP17.12■□□□□ 0.33
SHMT2-225ENST00000556798 RPE65Q16518 533 aa17.12■□□□□ 0.33
SHMT2-225ENST00000556798 SYTL3Q4VX76 610 aa17.12■□□□□ 0.33
SHMT2-225ENST00000556798 CHCHD2P9Q5T1J5 151 aaPredicted RBP17.12■□□□□ 0.33
SHMT2-225ENST00000556798 CNSTQ6PJW8 725 aa17.12■□□□□ 0.33
SHMT2-225ENST00000556798 ZNF438Q7Z4V0 828 aa17.12■□□□□ 0.33
SHMT2-225ENST00000556798 SPRED1Q7Z699 444 aa17.12■□□□□ 0.33
SHMT2-225ENST00000556798 SLC9B2Q86UD5 537 aa17.12■□□□□ 0.33
SHMT2-225ENST00000556798 LRRC6Q86X45 466 aa17.12■□□□□ 0.33
SHMT2-225ENST00000556798 TRIM48Q8IWZ4 208 aa17.12■□□□□ 0.33
SHMT2-225ENST00000556798 PALM2Q8IXS6 379 aa17.12■□□□□ 0.33
SHMT2-225ENST00000556798 LMNTD2Q8IXW0 634 aa17.12■□□□□ 0.33
SHMT2-225ENST00000556798 CHCHD4Q8N4Q1 142 aa17.12■□□□□ 0.33
SHMT2-225ENST00000556798 C2CD4AQ8NCU7 369 aaPredicted RBP17.12■□□□□ 0.33
SHMT2-225ENST00000556798 ADAMTS14Q8WXS8 1223 aa17.12■□□□□ 0.33
SHMT2-225ENST00000556798 CXorf40BQ96DE9 158 aa17.12■□□□□ 0.33
SHMT2-225ENST00000556798 C12orf66Q96MD2 445 aa17.12■□□□□ 0.33
SHMT2-225ENST00000556798 INSM2Q96T92 566 aaPredicted RBP17.12■□□□□ 0.33
SHMT2-225ENST00000556798 PHACTR1Q9C0D0 580 aa17.12■□□□□ 0.33
SHMT2-225ENST00000556798 SARS2Q9NP81 518 aaKnown RBP17.12■□□□□ 0.33
SHMT2-225ENST00000556798 IMP3Q9NV31 184 aaKnown RBP17.12■□□□□ 0.33
SHMT2-225ENST00000556798 MTRF1LQ9UGC7 380 aaKnown RBP17.12■□□□□ 0.33
SHMT2-225ENST00000556798 VPS9D1Q9Y2B5 631 aa17.12■□□□□ 0.33
SHMT2-225ENST00000556798 PCDHB1Q9Y5F3 818 aa17.12■□□□□ 0.33
SHMT2-225ENST00000556798 KIF26BQ2KJY2 2108 aa17.11■□□□□ 0.33
SHMT2-225ENST00000556798 MED19A0JLT2 244 aaPredicted RBP17.11■□□□□ 0.33
SHMT2-225ENST00000556798 HYAL3O43820 417 aaPredicted RBP17.11■□□□□ 0.33
SHMT2-225ENST00000556798 OPA1O60313 960 aa17.11■□□□□ 0.33
SHMT2-225ENST00000556798 HAUS5O94927 633 aa17.11■□□□□ 0.33
SHMT2-225ENST00000556798 VIPP01282 170 aa17.11■□□□□ 0.33
SHMT2-225ENST00000556798 ESR1P03372 595 aa17.11■□□□□ 0.33
SHMT2-225ENST00000556798 RPLP0P05388 317 aaKnown RBP17.11■□□□□ 0.33
SHMT2-225ENST00000556798 GSTM1P09488 218 aa17.11■□□□□ 0.33
SHMT2-225ENST00000556798 CCR7P32248 378 aa17.11■□□□□ 0.33
SHMT2-225ENST00000556798 ABCG1P45844 678 aa17.11■□□□□ 0.33
SHMT2-225ENST00000556798 OR1D5P58170 312 aa17.11■□□□□ 0.33
SHMT2-225ENST00000556798 CCL7P80098 99 aa17.11■□□□□ 0.33
SHMT2-225ENST00000556798 GSTM4Q03013 218 aa17.11■□□□□ 0.33
SHMT2-225ENST00000556798 TEDDM1Q5T9Z0 273 aa17.11■□□□□ 0.33
SHMT2-225ENST00000556798 HES3Q5TGS1 186 aa17.11■□□□□ 0.33
SHMT2-225ENST00000556798 ZNF549Q6P9A3 640 aa17.11■□□□□ 0.33
SHMT2-225ENST00000556798 RAB44Q7Z6P3 723 aaPredicted RBP17.11■□□□□ 0.33
SHMT2-225ENST00000556798 SPNS2Q8IVW8 549 aa17.11■□□□□ 0.33
SHMT2-225ENST00000556798 CNTN4Q8IWV2 1026 aa17.11■□□□□ 0.33
SHMT2-225ENST00000556798 TSSK1BQ9BXA7 367 aa17.11■□□□□ 0.33
SHMT2-225ENST00000556798 FOXP3Q9BZS1 431 aa17.11■□□□□ 0.33
SHMT2-225ENST00000556798 ABCG4Q9H172 646 aa17.11■□□□□ 0.33
SHMT2-225ENST00000556798 OR52A5Q9H2C5 316 aa17.11■□□□□ 0.33
SHMT2-225ENST00000556798 STN1Q9H668 368 aaKnown RBP17.11■□□□□ 0.33
SHMT2-225ENST00000556798 A0A1W2PQM1 296 aa17.1■□□□□ 0.33
SHMT2-225ENST00000556798 SLC5A10A0PJK1 596 aa17.1■□□□□ 0.33
SHMT2-225ENST00000556798 FAM149AA5PLN7 773 aa17.1■□□□□ 0.33
SHMT2-225ENST00000556798 LIN7AO14910 233 aaPredicted RBP17.1■□□□□ 0.33
SHMT2-225ENST00000556798 PIAS1O75925 651 aa17.1■□□□□ 0.33
SHMT2-225ENST00000556798 ADRB1P08588 477 aa17.1■□□□□ 0.33
SHMT2-225ENST00000556798 MTHFD1P11586 935 aaKnown RBP17.1■□□□□ 0.33
SHMT2-225ENST00000556798 PKMP14618 531 aaKnown RBP17.1■□□□□ 0.33
SHMT2-225ENST00000556798 PNLIPP16233 465 aa17.1■□□□□ 0.33
SHMT2-225ENST00000556798 XRCC1P18887 633 aaPredicted RBP17.1■□□□□ 0.33
SHMT2-225ENST00000556798 SPINK2P20155 84 aa17.1■□□□□ 0.33
SHMT2-225ENST00000556798 GABRB3P28472 473 aa17.1■□□□□ 0.33
SHMT2-225ENST00000556798 ALDH4A1P30038 563 aa17.1■□□□□ 0.33
SHMT2-225ENST00000556798 ADARP55265 1226 aaKnown RBP17.1■□□□□ 0.33
SHMT2-225ENST00000556798 GPX6P59796 221 aa17.1■□□□□ 0.33
SHMT2-225ENST00000556798 E2F1Q01094 437 aa17.1■□□□□ 0.33
SHMT2-225ENST00000556798 MGAT5Q09328 741 aa17.1■□□□□ 0.33
SHMT2-225ENST00000556798 HSPA14Q0VDF9 509 aa17.1■□□□□ 0.33
SHMT2-225ENST00000556798 FRG1Q14331 258 aaKnown RBP17.1■□□□□ 0.33
SHMT2-225ENST00000556798 MARCH9Q86YJ5 346 aa17.1■□□□□ 0.33
SHMT2-225ENST00000556798 PANX3Q96QZ0 392 aa17.1■□□□□ 0.33
SHMT2-225ENST00000556798 FMO2Q99518 471 aa17.1■□□□□ 0.33
SHMT2-225ENST00000556798 NDNQ99608 321 aa17.1■□□□□ 0.33
SHMT2-225ENST00000556798 SLC38A3Q99624 504 aa17.1■□□□□ 0.33
SHMT2-225ENST00000556798 TBC1D10AQ9BXI6 508 aa17.1■□□□□ 0.33
SHMT2-225ENST00000556798 SMYD2Q9NRG4 433 aa17.1■□□□□ 0.33
SHMT2-225ENST00000556798 POT1Q9NUX5 634 aa17.1■□□□□ 0.33
SHMT2-225ENST00000556798 MOCS1Q9NZB8 636 aa17.1■□□□□ 0.33
SHMT2-225ENST00000556798 NFU1Q9UMS0 254 aa17.1■□□□□ 0.33
SHMT2-225ENST00000556798 TCRBV9S1A1TA0A576 114 aa17.09■□□□□ 0.33
SHMT2-225ENST00000556798 B4GAT1O43505 415 aa17.09■□□□□ 0.33
SHMT2-225ENST00000556798 CHRM3P20309 590 aa17.09■□□□□ 0.33
SHMT2-225ENST00000556798 AOAHP28039 575 aa17.09■□□□□ 0.33
SHMT2-225ENST00000556798 LEPRP48357 1165 aaKnown RBP17.09■□□□□ 0.33
SHMT2-225ENST00000556798 RPA4Q13156 261 aa17.09■□□□□ 0.33
SHMT2-225ENST00000556798 CUL1Q13616 776 aa17.09■□□□□ 0.33
SHMT2-225ENST00000556798 NR1D2Q14995 579 aa17.09■□□□□ 0.33
SHMT2-225ENST00000556798 AMZ1Q400G9 498 aa17.09■□□□□ 0.33
SHMT2-225ENST00000556798 NKAIN2Q5VXU1 208 aa17.09■□□□□ 0.33
SHMT2-225ENST00000556798 CAPRIN2Q6IMN6 1127 aaKnown RBP17.09■□□□□ 0.33
SHMT2-225ENST00000556798 ZNF449Q6P9G9 518 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms