RNA–Protein interactions for RNA: ENST00000547672.5

PTCH1-215, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 881 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-215ENST00000547672 MXRA7P84157 204 aa13.2□□□□□ -0.3
PTCH1-215ENST00000547672 HERC3Q15034 1050 aa13.2□□□□□ -0.3
PTCH1-215ENST00000547672 PDCD2Q16342 344 aaPredicted RBP13.2□□□□□ -0.3
PTCH1-215ENST00000547672 AAK1Q2M2I8 961 aa13.2□□□□□ -0.3
PTCH1-215ENST00000547672 MAP7D1Q3KQU3 841 aa13.2□□□□□ -0.3
PTCH1-215ENST00000547672 LSM12Q3MHD2 195 aaKnown RBP13.2□□□□□ -0.3
PTCH1-215ENST00000547672 SLC9B1Q4ZJI4 515 aa13.2□□□□□ -0.3
PTCH1-215ENST00000547672 TMEM196Q5HYL7 178 aa13.2□□□□□ -0.3
PTCH1-215ENST00000547672 KANK2Q63ZY3 851 aa13.2□□□□□ -0.3
PTCH1-215ENST00000547672 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP13.2□□□□□ -0.3
PTCH1-215ENST00000547672 UBE2R2Q712K3 238 aaPredicted RBP13.2□□□□□ -0.3
PTCH1-215ENST00000547672 MAVSQ7Z434 540 aa13.2□□□□□ -0.3
PTCH1-215ENST00000547672 SPATA19Q7Z5L4 167 aa13.2□□□□□ -0.3
PTCH1-215ENST00000547672 PARP9Q8IXQ6 854 aa13.2□□□□□ -0.3
PTCH1-215ENST00000547672 RP9Q8TA86 221 aaKnown RBP13.2□□□□□ -0.3
PTCH1-215ENST00000547672 MAGEC3Q8TD91 643 aa13.2□□□□□ -0.3
PTCH1-215ENST00000547672 ASB12Q8WXK4 309 aa13.2□□□□□ -0.3
PTCH1-215ENST00000547672 LINC00615Q96LM1 132 aaPredicted RBP13.2□□□□□ -0.3
PTCH1-215ENST00000547672 RPP25Q9BUL9 199 aaKnown RBP13.2□□□□□ -0.3
PTCH1-215ENST00000547672 ARL15Q9NXU5 204 aa13.2□□□□□ -0.3
PTCH1-215ENST00000547672 WWOXQ9NZC7 414 aa13.2□□□□□ -0.3
PTCH1-215ENST00000547672 TMPRSS11EQ9UL52 423 aa13.2□□□□□ -0.3
PTCH1-215ENST00000547672 PLXNA2O75051 1894 aa13.19□□□□□ -0.3
PTCH1-215ENST00000547672 NCF1BA6NI72 391 aaPredicted RBP13.19□□□□□ -0.3
PTCH1-215ENST00000547672 NCF1CA8MVU1 366 aaPredicted RBP13.19□□□□□ -0.3
PTCH1-215ENST00000547672 FADS2P1A8MWK0 482 aa13.19□□□□□ -0.3
PTCH1-215ENST00000547672 B2RBV5 119 aa13.19□□□□□ -0.3
PTCH1-215ENST00000547672 K7EPI3 171 aa13.19□□□□□ -0.3
PTCH1-215ENST00000547672 MAN2B1O00754 1011 aa13.19□□□□□ -0.3
PTCH1-215ENST00000547672 UBDO15205 165 aa13.19□□□□□ -0.3
PTCH1-215ENST00000547672 KCNJ13O60928 360 aa13.19□□□□□ -0.3
PTCH1-215ENST00000547672 STK16O75716 305 aa13.19□□□□□ -0.3
PTCH1-215ENST00000547672 SIX3O95343 332 aaPredicted RBP13.19□□□□□ -0.3
PTCH1-215ENST00000547672 CBX6O95503 412 aa13.19□□□□□ -0.3
PTCH1-215ENST00000547672 NCF1P14598 390 aaPredicted RBP13.19□□□□□ -0.3
PTCH1-215ENST00000547672 EPB42P16452 691 aa13.19□□□□□ -0.3
PTCH1-215ENST00000547672 EPHA3P29320 983 aa13.19□□□□□ -0.3
PTCH1-215ENST00000547672 CDH13P55290 713 aa13.19□□□□□ -0.3
PTCH1-215ENST00000547672 RPS14P62263 151 aaKnown RBP13.19□□□□□ -0.3
PTCH1-215ENST00000547672 BTKQ06187 659 aa13.19□□□□□ -0.3
PTCH1-215ENST00000547672 GRIK2Q13002 908 aa13.19□□□□□ -0.3
PTCH1-215ENST00000547672 RPA4Q13156 261 aa13.19□□□□□ -0.3
PTCH1-215ENST00000547672 STX5Q13190 355 aa13.19□□□□□ -0.3
PTCH1-215ENST00000547672 GTF2H2Q13888 395 aa13.19□□□□□ -0.3
PTCH1-215ENST00000547672 SQLEQ14534 574 aa13.19□□□□□ -0.3
PTCH1-215ENST00000547672 PPP1R3AQ16821 1122 aa13.19□□□□□ -0.3
PTCH1-215ENST00000547672 PUS10Q3MIT2 529 aaKnown RBP13.19□□□□□ -0.3
PTCH1-215ENST00000547672 PIP5KL1Q5T9C9 394 aa13.19□□□□□ -0.3
PTCH1-215ENST00000547672 C6orf163Q5TEZ5 329 aa13.19□□□□□ -0.3
PTCH1-215ENST00000547672 VWA5B1Q5TIE3 1220 aa13.19□□□□□ -0.3
PTCH1-215ENST00000547672 GTF2H2CQ6P1K8 395 aa13.19□□□□□ -0.3
PTCH1-215ENST00000547672 PNCKQ6P2M8 343 aa13.19□□□□□ -0.3
PTCH1-215ENST00000547672 TMEM220Q6QAJ8 160 aa13.19□□□□□ -0.3
PTCH1-215ENST00000547672 USP30Q70CQ3 517 aa13.19□□□□□ -0.3
PTCH1-215ENST00000547672 DET1Q7L5Y6 550 aa13.19□□□□□ -0.3
PTCH1-215ENST00000547672 C10orf67Q8IYJ2 551 aa13.19□□□□□ -0.3
PTCH1-215ENST00000547672 SLC44A3Q8N4M1 653 aa13.19□□□□□ -0.3
PTCH1-215ENST00000547672 TEX9Q8N6V9 391 aa13.19□□□□□ -0.3
PTCH1-215ENST00000547672 RASGEF1AQ8N9B8 481 aa13.19□□□□□ -0.3
PTCH1-215ENST00000547672 AGAP11Q8TF27 550 aa13.19□□□□□ -0.3
PTCH1-215ENST00000547672 RHBDF1Q96CC6 855 aa13.19□□□□□ -0.3
PTCH1-215ENST00000547672 C19orf60Q96EN9 201 aa13.19□□□□□ -0.3
PTCH1-215ENST00000547672 CCDC138Q96M89 665 aa13.19□□□□□ -0.3
PTCH1-215ENST00000547672 ACOX2Q99424 681 aa13.19□□□□□ -0.3
PTCH1-215ENST00000547672 PHF7Q9BWX1 381 aaPredicted RBP13.19□□□□□ -0.3
PTCH1-215ENST00000547672 SHCBP1LQ9BZQ2 653 aa13.19□□□□□ -0.3
PTCH1-215ENST00000547672 SLC32A1Q9H598 525 aa13.19□□□□□ -0.3
PTCH1-215ENST00000547672 PREBQ9HCU5 417 aa13.19□□□□□ -0.3
PTCH1-215ENST00000547672 FZD4Q9ULV1 537 aa13.19□□□□□ -0.3
PTCH1-215ENST00000547672 PIAS3Q9Y6X2 628 aa13.19□□□□□ -0.3
PTCH1-215ENST00000547672 MUC22E2RYF6 1773 aaPredicted RBP13.19□□□□□ -0.3
PTCH1-215ENST00000547672 PRR5-ARHGAP8B1AHC4 643 aa13.18□□□□□ -0.3
PTCH1-215ENST00000547672 E9PBE3 544 aa13.18□□□□□ -0.3
PTCH1-215ENST00000547672 E2F3O00716 465 aa13.18□□□□□ -0.3
PTCH1-215ENST00000547672 SDHDO14521 159 aa13.18□□□□□ -0.3
PTCH1-215ENST00000547672 MID1O15344 667 aa13.18□□□□□ -0.3
PTCH1-215ENST00000547672 DCXO43602 365 aa13.18□□□□□ -0.3
PTCH1-215ENST00000547672 KLHL41O60662 606 aa13.18□□□□□ -0.3
PTCH1-215ENST00000547672 RNASEH2AO75792 299 aaKnown RBP13.18□□□□□ -0.3
PTCH1-215ENST00000547672 WDR47O94967 919 aa13.18□□□□□ -0.3
PTCH1-215ENST00000547672 EBLN1P0CF75 366 aa13.18□□□□□ -0.3
PTCH1-215ENST00000547672 C7P10643 843 aa13.18□□□□□ -0.3
PTCH1-215ENST00000547672 ACADMP11310 421 aa13.18□□□□□ -0.3
PTCH1-215ENST00000547672 CCNG1P51959 295 aa13.18□□□□□ -0.3
PTCH1-215ENST00000547672 HK3P52790 923 aa13.18□□□□□ -0.3
PTCH1-215ENST00000547672 ARHGAP8P85298 464 aa13.18□□□□□ -0.3
PTCH1-215ENST00000547672 ZNF33BQ06732 778 aa13.18□□□□□ -0.3
PTCH1-215ENST00000547672 KLF10Q13118 480 aa13.18□□□□□ -0.3
PTCH1-215ENST00000547672 RIPK1Q13546 671 aa13.18□□□□□ -0.3
PTCH1-215ENST00000547672 CYLC2Q14093 348 aaPredicted RBP13.18□□□□□ -0.3
PTCH1-215ENST00000547672 BOP1Q14137 746 aaKnown RBP13.18□□□□□ -0.3
PTCH1-215ENST00000547672 GSTA3Q16772 222 aa13.18□□□□□ -0.3
PTCH1-215ENST00000547672 SMU1Q2TAY7 513 aa13.18□□□□□ -0.3
PTCH1-215ENST00000547672 ATG14Q6ZNE5 492 aa13.18□□□□□ -0.3
PTCH1-215ENST00000547672 RNF165Q6ZSG1 346 aa13.18□□□□□ -0.3
PTCH1-215ENST00000547672 CHSY3Q70JA7 882 aa13.18□□□□□ -0.3
PTCH1-215ENST00000547672 LRRC70Q7Z2Q7 622 aa13.18□□□□□ -0.3
PTCH1-215ENST00000547672 MILR1Q7Z6M3 343 aa13.18□□□□□ -0.3
PTCH1-215ENST00000547672 FBXO15Q8NCQ5 510 aaPredicted RBP13.18□□□□□ -0.3
PTCH1-215ENST00000547672 MAPK15Q8TD08 544 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms