RNA–Protein interactions for RNA: ENST00000545689.2

COL4A6-209, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,380 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-209ENST00000545689 ZNF12P17014 697 aa12.36□□□□□ -0.43
COL4A6-209ENST00000545689 NELFEP18615 380 aaKnown RBP12.36□□□□□ -0.43
COL4A6-209ENST00000545689 CMPK1P30085 196 aa12.36□□□□□ -0.43
COL4A6-209ENST00000545689 CBSP35520 551 aa12.36□□□□□ -0.43
COL4A6-209ENST00000545689 NRG1Q02297 640 aaPredicted RBP12.36□□□□□ -0.43
COL4A6-209ENST00000545689 RNF44Q7L0R7 432 aa12.36□□□□□ -0.43
COL4A6-209ENST00000545689 C8orf48Q96LL4 319 aa12.36□□□□□ -0.43
COL4A6-209ENST00000545689 MCMBPQ9BTE3 642 aa12.36□□□□□ -0.43
COL4A6-209ENST00000545689 ZDHHC4Q9NPG8 344 aa12.36□□□□□ -0.43
COL4A6-209ENST00000545689 UBAP1Q9NZ09 502 aa12.36□□□□□ -0.43
COL4A6-209ENST00000545689 CIDEBQ9UHD4 219 aa12.36□□□□□ -0.43
COL4A6-209ENST00000545689 CNOT6Q9ULM6 557 aaKnown RBP12.36□□□□□ -0.43
COL4A6-209ENST00000545689 ILVBLA1L0T0 632 aa12.36□□□□□ -0.43
COL4A6-209ENST00000545689 H0YGN5 161 aa12.36□□□□□ -0.43
COL4A6-209ENST00000545689 GTPBP1O00178 669 aaKnown RBP12.36□□□□□ -0.43
COL4A6-209ENST00000545689 ITGAXP20702 1163 aa12.36□□□□□ -0.43
COL4A6-209ENST00000545689 PSMA1P25786 263 aaKnown RBP12.36□□□□□ -0.43
COL4A6-209ENST00000545689 FAUP35544 74 aaKnown RBP12.36□□□□□ -0.43
COL4A6-209ENST00000545689 ZNF730Q6ZMV8 503 aa12.36□□□□□ -0.43
COL4A6-209ENST00000545689 CPNE9Q8IYJ1 553 aa12.36□□□□□ -0.43
COL4A6-209ENST00000545689 KLHL23Q8NBE8 558 aa12.36□□□□□ -0.43
COL4A6-209ENST00000545689 CAPSLQ8WWF8 208 aa12.36□□□□□ -0.43
COL4A6-209ENST00000545689 RFKQ969G6 155 aa12.36□□□□□ -0.43
COL4A6-209ENST00000545689 SLC38A4Q969I6 547 aa12.36□□□□□ -0.43
COL4A6-209ENST00000545689 PPP1R14BQ96C90 147 aa12.36□□□□□ -0.43
COL4A6-209ENST00000545689 BORCS6Q96GS4 357 aa12.36□□□□□ -0.43
COL4A6-209ENST00000545689 TMEM175Q9BSA9 504 aa12.36□□□□□ -0.43
COL4A6-209ENST00000545689 RAB11FIP5Q9BXF6 653 aa12.36□□□□□ -0.43
COL4A6-209ENST00000545689 SLC29A3Q9BZD2 475 aa12.36□□□□□ -0.43
COL4A6-209ENST00000545689 SMOC2Q9H3U7 446 aa12.36□□□□□ -0.43
COL4A6-209ENST00000545689 MAT2BQ9NZL9 334 aa12.36□□□□□ -0.43
COL4A6-209ENST00000545689 COMMD9Q9P000 198 aa12.36□□□□□ -0.43
COL4A6-209ENST00000545689 SNX10Q9Y5X0 201 aa12.36□□□□□ -0.43
COL4A6-209ENST00000545689 NFS1Q9Y697 457 aa12.36□□□□□ -0.43
COL4A6-209ENST00000545689 PHLPP1O60346 1717 aa12.36□□□□□ -0.43
COL4A6-209ENST00000545689 TCRBV7S3A2A0A539 114 aa12.35□□□□□ -0.43
COL4A6-209ENST00000545689 HLA-DQB2P05538 268 aa12.35□□□□□ -0.43
COL4A6-209ENST00000545689 ALDH4A1P30038 563 aa12.35□□□□□ -0.43
COL4A6-209ENST00000545689 CHST15Q7LFX5 561 aaPredicted RBP12.35□□□□□ -0.43
COL4A6-209ENST00000545689 GALNT5Q7Z7M9 940 aa12.35□□□□□ -0.43
COL4A6-209ENST00000545689 SLC43A3Q8NBI5 491 aa12.35□□□□□ -0.43
COL4A6-209ENST00000545689 MINDY2Q8NBR6 621 aa12.35□□□□□ -0.43
COL4A6-209ENST00000545689 DDX1Q92499 740 aaKnown RBP12.35□□□□□ -0.43
COL4A6-209ENST00000545689 PPP1R14AQ96A00 147 aa12.35□□□□□ -0.43
COL4A6-209ENST00000545689 GPR22Q99680 433 aa12.35□□□□□ -0.43
COL4A6-209ENST00000545689 CXorf21Q9HAI6 301 aa12.35□□□□□ -0.43
COL4A6-209ENST00000545689 TMEM27Q9HBJ8 222 aa12.35□□□□□ -0.43
COL4A6-209ENST00000545689 PCDHGC4Q9Y5F7 938 aa12.35□□□□□ -0.43
COL4A6-209ENST00000545689 ZNF536O15090 1300 aa12.35□□□□□ -0.43
COL4A6-209ENST00000545689 UGT1A9O60656 530 aa12.35□□□□□ -0.43
COL4A6-209ENST00000545689 TNFRSF21O75509 655 aa12.35□□□□□ -0.43
COL4A6-209ENST00000545689 HOXD13P35453 343 aa12.35□□□□□ -0.43
COL4A6-209ENST00000545689 ATP4BP51164 291 aa12.35□□□□□ -0.43
COL4A6-209ENST00000545689 IRF9Q00978 393 aa12.35□□□□□ -0.43
COL4A6-209ENST00000545689 GALNT2Q10471 571 aa12.35□□□□□ -0.43
COL4A6-209ENST00000545689 TIGD5Q53EQ6 642 aa12.35□□□□□ -0.43
COL4A6-209ENST00000545689 LRRC70Q7Z2Q7 622 aa12.35□□□□□ -0.43
COL4A6-209ENST00000545689 ACDQ96AP0 544 aa12.35□□□□□ -0.43
COL4A6-209ENST00000545689 EBF4Q9BQW3 602 aa12.35□□□□□ -0.43
COL4A6-209ENST00000545689 UGT1A7Q9HAW7 530 aa12.35□□□□□ -0.43
COL4A6-209ENST00000545689 UGT1A10Q9HAW8 530 aa12.35□□□□□ -0.43
COL4A6-209ENST00000545689 UGT1A8Q9HAW9 530 aa12.35□□□□□ -0.43
COL4A6-209ENST00000545689 USP29Q9HBJ7 922 aa12.35□□□□□ -0.43
COL4A6-209ENST00000545689 IL1RAPQ9NPH3 570 aa12.35□□□□□ -0.43
COL4A6-209ENST00000545689 U3KQV3 271 aa12.35□□□□□ -0.43
COL4A6-209ENST00000545689 CASKO14936 926 aa12.35□□□□□ -0.43
COL4A6-209ENST00000545689 SSNA1O43805 119 aa12.35□□□□□ -0.43
COL4A6-209ENST00000545689 HNF4AP41235 474 aa12.35□□□□□ -0.43
COL4A6-209ENST00000545689 NDUFA9Q16795 377 aa12.35□□□□□ -0.43
COL4A6-209ENST00000545689 EPGNQ6UW88 154 aa12.35□□□□□ -0.43
COL4A6-209ENST00000545689 FAM131AQ6UXB0 335 aa12.35□□□□□ -0.43
COL4A6-209ENST00000545689 ZNF514Q96K75 400 aaPredicted RBP12.35□□□□□ -0.43
COL4A6-209ENST00000545689 COQ10BQ9H8M1 238 aa12.35□□□□□ -0.43
COL4A6-209ENST00000545689 POPDC3Q9HBV1 291 aa12.35□□□□□ -0.43
COL4A6-209ENST00000545689 SLC7A8Q9UHI5 535 aa12.35□□□□□ -0.43
COL4A6-209ENST00000545689 PCDHGA4Q9Y5G9 962 aa12.35□□□□□ -0.43
COL4A6-209ENST00000545689 WASF2Q9Y6W5 498 aa12.35□□□□□ -0.43
COL4A6-209ENST00000545689 ATXN1P54253 815 aaKnown RBP12.35□□□□□ -0.43
COL4A6-209ENST00000545689 ZNF460Q14592 562 aa12.35□□□□□ -0.43
COL4A6-209ENST00000545689 HEPACAMQ14CZ8 416 aa12.35□□□□□ -0.43
COL4A6-209ENST00000545689 TTC29Q8NA56 475 aaPredicted RBP12.35□□□□□ -0.43
COL4A6-209ENST00000545689 FAM98AQ8NCA5 519 aaKnown RBP12.35□□□□□ -0.43
COL4A6-209ENST00000545689 PIK3R3Q92569 461 aa12.35□□□□□ -0.43
COL4A6-209ENST00000545689 TLL1O43897 1013 aa12.35□□□□□ -0.43
COL4A6-209ENST00000545689 MAPK12P53778 367 aa12.35□□□□□ -0.43
COL4A6-209ENST00000545689 CPNE8Q86YQ8 564 aa12.35□□□□□ -0.43
COL4A6-209ENST00000545689 HID1Q8IV36 788 aa12.35□□□□□ -0.43
COL4A6-209ENST00000545689 IMP3Q9NV31 184 aaKnown RBP12.35□□□□□ -0.43
COL4A6-209ENST00000545689 FCF1Q9Y324 198 aaKnown RBP12.35□□□□□ -0.43
COL4A6-209ENST00000545689 KHDRBS3O75525 346 aaKnown RBP12.34□□□□□ -0.43
COL4A6-209ENST00000545689 BCAP31P51572 246 aa12.34□□□□□ -0.43
COL4A6-209ENST00000545689 SRP54P61011 504 aaKnown RBP12.34□□□□□ -0.43
COL4A6-209ENST00000545689 SIM2Q14190 667 aaPredicted RBP12.34□□□□□ -0.43
COL4A6-209ENST00000545689 LINGO4Q6UY18 593 aa12.34□□□□□ -0.43
COL4A6-209ENST00000545689 ZDHHC21Q8IVQ6 265 aa12.34□□□□□ -0.43
COL4A6-209ENST00000545689 ADGRG2Q8IZP9 1017 aa12.34□□□□□ -0.43
COL4A6-209ENST00000545689 ABCG8Q9H221 673 aa12.34□□□□□ -0.43
COL4A6-209ENST00000545689 HEBP2Q9Y5Z4 205 aa12.34□□□□□ -0.43
COL4A6-209ENST00000545689 IRAK3Q9Y616 596 aa12.34□□□□□ -0.43
COL4A6-209ENST00000545689 NPPAP01160 153 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 189.4 ms