RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 UXS1Q8NBZ7 420 aa14.05□□□□□ -0.16
LIMS1-215ENST00000544547 EFHD2Q96C19 240 aaPredicted RBP14.05□□□□□ -0.16
LIMS1-215ENST00000544547 NEURL2Q9BR09 285 aa14.05□□□□□ -0.16
LIMS1-215ENST00000544547 CLPBQ9H078 707 aa14.05□□□□□ -0.16
LIMS1-215ENST00000544547 BPIFA1Q9NP55 256 aa14.05□□□□□ -0.16
LIMS1-215ENST00000544547 TMLHEQ9NVH6 421 aa14.05□□□□□ -0.16
LIMS1-215ENST00000544547 ERVK13-1Q9NX77 482 aa14.05□□□□□ -0.16
LIMS1-215ENST00000544547 SIX4Q9UIU6 781 aa14.05□□□□□ -0.16
LIMS1-215ENST00000544547 GLI3P10071 1580 aa14.05□□□□□ -0.16
LIMS1-215ENST00000544547 LRRC14BA6NHZ5 514 aa14.05□□□□□ -0.16
LIMS1-215ENST00000544547 F8W810 466 aa14.05□□□□□ -0.16
LIMS1-215ENST00000544547 CBX4O00257 560 aa14.05□□□□□ -0.16
LIMS1-215ENST00000544547 RRM2P31350 389 aa14.05□□□□□ -0.16
LIMS1-215ENST00000544547 ZNF132P52740 706 aa14.05□□□□□ -0.16
LIMS1-215ENST00000544547 GALNT3Q14435 633 aa14.05□□□□□ -0.16
LIMS1-215ENST00000544547 SYPL2Q5VXT5 272 aa14.05□□□□□ -0.16
LIMS1-215ENST00000544547 HID1Q8IV36 788 aa14.05□□□□□ -0.16
LIMS1-215ENST00000544547 LPCAT1Q8NF37 534 aa14.05□□□□□ -0.16
LIMS1-215ENST00000544547 TRPM4Q8TD43 1214 aa14.05□□□□□ -0.16
LIMS1-215ENST00000544547 RNFT2Q96EX2 444 aa14.05□□□□□ -0.16
LIMS1-215ENST00000544547 DSN1Q9H410 356 aa14.05□□□□□ -0.16
LIMS1-215ENST00000544547 NANOGQ9H9S0 305 aa14.05□□□□□ -0.16
LIMS1-215ENST00000544547 INTS7Q9NVH2 962 aaKnown RBP14.05□□□□□ -0.16
LIMS1-215ENST00000544547 IFT52Q9Y366 437 aa14.05□□□□□ -0.16
LIMS1-215ENST00000544547 ANKRD36CQ5JPF3 1778 aa14.05□□□□□ -0.16
LIMS1-215ENST00000544547 SMIM30A4D0T7 59 aa14.05□□□□□ -0.16
LIMS1-215ENST00000544547 SNTNA6NMZ2 147 aa14.05□□□□□ -0.16
LIMS1-215ENST00000544547 ARIH2O95376 493 aa14.05□□□□□ -0.16
LIMS1-215ENST00000544547 EFNA1P20827 205 aaPredicted RBP14.05□□□□□ -0.16
LIMS1-215ENST00000544547 LMO2P25791 158 aa14.05□□□□□ -0.16
LIMS1-215ENST00000544547 CD47Q08722 323 aa14.05□□□□□ -0.16
LIMS1-215ENST00000544547 SMARCB1Q12824 385 aa14.05□□□□□ -0.16
LIMS1-215ENST00000544547 PHKG1Q16816 387 aa14.05□□□□□ -0.16
LIMS1-215ENST00000544547 PCSK9Q8NBP7 692 aaKnown RBP14.05□□□□□ -0.16
LIMS1-215ENST00000544547 LRCH3Q96II8 777 aa14.05□□□□□ -0.16
LIMS1-215ENST00000544547 SYNDIG1Q9H7V2 258 aa14.05□□□□□ -0.16
LIMS1-215ENST00000544547 C12orf71A8MTZ7 269 aa14.05□□□□□ -0.16
LIMS1-215ENST00000544547 CXCL11O14625 94 aa14.05□□□□□ -0.16
LIMS1-215ENST00000544547 ACOT8O14734 319 aa14.05□□□□□ -0.16
LIMS1-215ENST00000544547 HAT1O14929 419 aa14.05□□□□□ -0.16
LIMS1-215ENST00000544547 EPN2O95208 641 aa14.05□□□□□ -0.16
LIMS1-215ENST00000544547 PIGRP01833 764 aa14.05□□□□□ -0.16
LIMS1-215ENST00000544547 SERPINF2P08697 491 aa14.05□□□□□ -0.16
LIMS1-215ENST00000544547 DCKP27707 260 aa14.05□□□□□ -0.16
LIMS1-215ENST00000544547 POLD2P49005 469 aa14.05□□□□□ -0.16
LIMS1-215ENST00000544547 PPP5CP53041 499 aa14.05□□□□□ -0.16
LIMS1-215ENST00000544547 OR4D2P58180 307 aa14.05□□□□□ -0.16
LIMS1-215ENST00000544547 NHSL2Q5HYW2 709 aa14.05□□□□□ -0.16
LIMS1-215ENST00000544547 GPR65Q8IYL9 337 aa14.05□□□□□ -0.16
LIMS1-215ENST00000544547 TMCO6Q96DC7 493 aa14.05□□□□□ -0.16
LIMS1-215ENST00000544547 ABHD16BQ9H3Z7 469 aa14.05□□□□□ -0.16
LIMS1-215ENST00000544547 ANKMY1Q9P2S6 941 aa14.05□□□□□ -0.16
LIMS1-215ENST00000544547 A0A1W2PP18 115 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 GNG14A0A1W2PPG7 69 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 RFXANKO14593 260 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 PPEF2O14830 753 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 MT-ND2P03891 347 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 RHOCP08134 193 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 CD1EP15812 388 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 TALDO1P37837 337 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 ATP6AP1Q15904 470 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 SLC36A3Q495N2 470 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 NOL9Q5SY16 702 aaKnown RBP14.04□□□□□ -0.16
LIMS1-215ENST00000544547 NARS2Q96I59 477 aaKnown RBP14.04□□□□□ -0.16
LIMS1-215ENST00000544547 XYLT2Q9H1B5 865 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 PDZD7Q9H5P4 517 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 CDKN2AIPQ9NXV6 580 aaPredicted RBP14.04□□□□□ -0.16
LIMS1-215ENST00000544547 CCDC59Q9P031 241 aaKnown RBP14.04□□□□□ -0.16
LIMS1-215ENST00000544547 FZD10Q9ULW2 581 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 MAP1BP46821 2468 aaKnown RBP14.04□□□□□ -0.16
LIMS1-215ENST00000544547 ISPDA4D126 451 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 EDN1P05305 212 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 GLUD2P49448 558 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 DGKEP52429 567 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 SLC16A1P53985 500 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 EEFSECP57772 596 aaKnown RBP14.04□□□□□ -0.16
LIMS1-215ENST00000544547 BNC1Q01954 994 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 MBTD1Q05BQ5 628 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 COX10Q12887 443 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 HIST2H2ACQ16777 129 aaPredicted RBP14.04□□□□□ -0.16
LIMS1-215ENST00000544547 HIST2H2AA3Q6FI13 130 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 CASP12Q6UXS9 341 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 USP43Q70EL4 1123 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 COLGALT2Q8IYK4 626 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 SPARTQ8N0X7 666 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 OR5K1Q8NHB7 308 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 LILRB4Q8NHJ6 448 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 SELENOMQ8WWX9 145 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 KLRG1Q96E93 195 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 EXOC2Q96KP1 924 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 RABL2BQ9UNT1 228 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 STYXL1Q9Y6J8 313 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 DOCK2Q92608 1830 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 KPNA6O60684 536 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 PRKACBP22694 351 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 HTR2BP41595 481 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 RHOAP61586 193 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 SNRPD2P62316 118 aaKnown RBP14.04□□□□□ -0.16
LIMS1-215ENST00000544547 TP53BP2Q13625 1128 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 ITIH5Q86UX2 942 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms