RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 RAD9AQ99638 391 aa16.05■□□□□ 0.16
COL4A1-204ENST00000543140 TMEM79Q9BSE2 394 aa16.05■□□□□ 0.16
COL4A1-204ENST00000543140 PFDN4Q9NQP4 134 aa16.05■□□□□ 0.16
COL4A1-204ENST00000543140 EGFL7Q9UHF1 273 aa16.05■□□□□ 0.16
COL4A1-204ENST00000543140 AP4S1Q9Y587 144 aa16.05■□□□□ 0.16
COL4A1-204ENST00000543140 MAGEA13PA6NCF6 341 aa16.04■□□□□ 0.16
COL4A1-204ENST00000543140 ASPDHA6ND91 283 aa16.04■□□□□ 0.16
COL4A1-204ENST00000543140 TTC34A8MYJ7 566 aa16.04■□□□□ 0.16
COL4A1-204ENST00000543140 PEX1O43933 1283 aa16.04■□□□□ 0.16
COL4A1-204ENST00000543140 OTCP00480 354 aa16.04■□□□□ 0.16
COL4A1-204ENST00000543140 LYNP07948 512 aa16.04■□□□□ 0.16
COL4A1-204ENST00000543140 CCR7P32248 378 aa16.04■□□□□ 0.16
COL4A1-204ENST00000543140 RECQLP46063 649 aaPredicted RBP16.04■□□□□ 0.16
COL4A1-204ENST00000543140 ZFP36L2P47974 494 aaKnown RBP16.04■□□□□ 0.16
COL4A1-204ENST00000543140 ARHGEF7Q14155 803 aa16.04■□□□□ 0.16
COL4A1-204ENST00000543140 TIGD2Q4W5G0 525 aa16.04■□□□□ 0.16
COL4A1-204ENST00000543140 DHFR2Q86XF0 187 aa16.04■□□□□ 0.16
COL4A1-204ENST00000543140 SCAMP4Q969E2 229 aa16.04■□□□□ 0.16
COL4A1-204ENST00000543140 ZNF641Q96N77 438 aaPredicted RBP16.04■□□□□ 0.16
COL4A1-204ENST00000543140 C19orf43Q9BQ61 176 aa16.04■□□□□ 0.16
COL4A1-204ENST00000543140 SLAMF8Q9P0V8 285 aa16.04■□□□□ 0.16
COL4A1-204ENST00000543140 OPTCQ9UBM4 332 aa16.04■□□□□ 0.16
COL4A1-204ENST00000543140 TMPRSS11EQ9UL52 423 aa16.04■□□□□ 0.16
COL4A1-204ENST00000543140 PPIL1Q9Y3C6 166 aa16.04■□□□□ 0.16
COL4A1-204ENST00000543140 A0A1W2PP18 115 aa16.04■□□□□ 0.16
COL4A1-204ENST00000543140 PAX7P23759 505 aa16.04■□□□□ 0.16
COL4A1-204ENST00000543140 SLC6A2P23975 617 aa16.04■□□□□ 0.16
COL4A1-204ENST00000543140 IL12AP29459 219 aa16.04■□□□□ 0.16
COL4A1-204ENST00000543140 HMOX2P30519 316 aa16.04■□□□□ 0.16
COL4A1-204ENST00000543140 SPINT3P49223 89 aa16.04■□□□□ 0.16
COL4A1-204ENST00000543140 POLR2JP52435 117 aaKnown RBP16.04■□□□□ 0.16
COL4A1-204ENST00000543140 RHDQ02161 417 aa16.04■□□□□ 0.16
COL4A1-204ENST00000543140 HSPA14Q0VDF9 509 aa16.04■□□□□ 0.16
COL4A1-204ENST00000543140 MED21Q13503 144 aa16.04■□□□□ 0.16
COL4A1-204ENST00000543140 NFYCQ13952 458 aa16.04■□□□□ 0.16
COL4A1-204ENST00000543140 RCAN2Q14206 197 aa16.04■□□□□ 0.16
COL4A1-204ENST00000543140 NR6A1Q15406 480 aa16.04■□□□□ 0.16
COL4A1-204ENST00000543140 AAK1Q2M2I8 961 aa16.04■□□□□ 0.16
COL4A1-204ENST00000543140 SGO1Q5FBB7 561 aa16.04■□□□□ 0.16
COL4A1-204ENST00000543140 PAGE3Q5JUK9 113 aa16.04■□□□□ 0.16
COL4A1-204ENST00000543140 GALNT4Q8N4A0 578 aa16.04■□□□□ 0.16
COL4A1-204ENST00000543140 ZNF366Q8N895 744 aa16.04■□□□□ 0.16
COL4A1-204ENST00000543140 RHBDF1Q96CC6 855 aa16.04■□□□□ 0.16
COL4A1-204ENST00000543140 NR1H4Q96RI1 486 aaPredicted RBP16.04■□□□□ 0.16
COL4A1-204ENST00000543140 HOPXQ9BPY8 73 aaPredicted RBP16.04■□□□□ 0.16
COL4A1-204ENST00000543140 SPATA16Q9BXB7 569 aa16.04■□□□□ 0.16
COL4A1-204ENST00000543140 CD244Q9BZW8 370 aa16.04■□□□□ 0.16
COL4A1-204ENST00000543140 CEP44Q9C0F1 390 aa16.04■□□□□ 0.16
COL4A1-204ENST00000543140 VCXQ9H320 206 aa16.04■□□□□ 0.16
COL4A1-204ENST00000543140 CMTM6Q9NX76 183 aa16.04■□□□□ 0.16
COL4A1-204ENST00000543140 ERVW-1Q9UQF0 538 aa16.04■□□□□ 0.16
COL4A1-204ENST00000543140 ST14Q9Y5Y6 855 aa16.04■□□□□ 0.16
COL4A1-204ENST00000543140 CHD9Q3L8U1 2897 aa16.04■□□□□ 0.16
COL4A1-204ENST00000543140 CCDC154A6NI56 674 aa16.03■□□□□ 0.16
COL4A1-204ENST00000543140 C8BP07358 591 aa16.03■□□□□ 0.16
COL4A1-204ENST00000543140 FOLH1Q04609 750 aa16.03■□□□□ 0.16
COL4A1-204ENST00000543140 FPGSQ05932 587 aa16.03■□□□□ 0.16
COL4A1-204ENST00000543140 TRAP1Q12931 704 aaKnown RBP16.03■□□□□ 0.16
COL4A1-204ENST00000543140 ZNF77Q15935 545 aa16.03■□□□□ 0.16
COL4A1-204ENST00000543140 PLA2G4EQ3MJ16 856 aa16.03■□□□□ 0.16
COL4A1-204ENST00000543140 TTLL9Q3SXZ7 439 aa16.03■□□□□ 0.16
COL4A1-204ENST00000543140 RABL3Q5HYI8 236 aa16.03■□□□□ 0.16
COL4A1-204ENST00000543140 ELMSAN1Q6PJG2 1045 aa16.03■□□□□ 0.16
COL4A1-204ENST00000543140 IFNEQ86WN2 208 aa16.03■□□□□ 0.16
COL4A1-204ENST00000543140 SLCO4A1Q96BD0 722 aa16.03■□□□□ 0.16
COL4A1-204ENST00000543140 BRINP2Q9C0B6 783 aa16.03■□□□□ 0.16
COL4A1-204ENST00000543140 FARSBQ9NSD9 589 aaKnown RBP16.03■□□□□ 0.16
COL4A1-204ENST00000543140 GID8Q9NWU2 228 aa16.03■□□□□ 0.16
COL4A1-204ENST00000543140 ZNF839A8K0R7 811 aa16.03■□□□□ 0.16
COL4A1-204ENST00000543140 LEFTY1O75610 366 aa16.03■□□□□ 0.16
COL4A1-204ENST00000543140 POLR2EP19388 210 aaKnown RBP16.03■□□□□ 0.16
COL4A1-204ENST00000543140 DDX6P26196 483 aaKnown RBP eCLIP16.03■□□□□ 0.16
COL4A1-204ENST00000543140 AKT1P31749 480 aa16.03■□□□□ 0.16
COL4A1-204ENST00000543140 GRIA3P42263 894 aa16.03■□□□□ 0.16
COL4A1-204ENST00000543140 PPIGQ13427 754 aaKnown RBP eCLIP16.03■□□□□ 0.16
COL4A1-204ENST00000543140 RFTN2Q52LD8 501 aaPredicted RBP16.03■□□□□ 0.16
COL4A1-204ENST00000543140 ARSIQ5FYB1 569 aa16.03■□□□□ 0.16
COL4A1-204ENST00000543140 TMEM240Q5SV17 173 aa16.03■□□□□ 0.16
COL4A1-204ENST00000543140 FBXL19Q6PCT2 694 aa16.03■□□□□ 0.16
COL4A1-204ENST00000543140 MINDY1Q8N5J2 469 aa16.03■□□□□ 0.16
COL4A1-204ENST00000543140 TMEM102Q8N9M5 508 aaPredicted RBP16.03■□□□□ 0.16
COL4A1-204ENST00000543140 FAM110BQ8TC76 370 aa16.03■□□□□ 0.16
COL4A1-204ENST00000543140 PROKR1Q8TCW9 393 aa16.03■□□□□ 0.16
COL4A1-204ENST00000543140 LRTOMTQ8WZ04 291 aa16.03■□□□□ 0.16
COL4A1-204ENST00000543140 KCTD5Q9NXV2 234 aa16.03■□□□□ 0.16
COL4A1-204ENST00000543140 SUN2Q9UH99 717 aa16.03■□□□□ 0.16
COL4A1-204ENST00000543140 KRT87PA6NCN2 255 aa16.02■□□□□ 0.16
COL4A1-204ENST00000543140 G6PDP11413 515 aa16.02■□□□□ 0.16
COL4A1-204ENST00000543140 ATP6V1B2P21281 511 aa16.02■□□□□ 0.16
COL4A1-204ENST00000543140 PTPN5P54829 565 aa16.02■□□□□ 0.16
COL4A1-204ENST00000543140 BOP1Q14137 746 aaKnown RBP16.02■□□□□ 0.16
COL4A1-204ENST00000543140 CRY1Q16526 586 aa16.02■□□□□ 0.16
COL4A1-204ENST00000543140 AP5B1Q2VPB7 878 aa16.02■□□□□ 0.16
COL4A1-204ENST00000543140 SULT1C3Q6IMI6 304 aa16.02■□□□□ 0.16
COL4A1-204ENST00000543140 HSD11B1LQ7Z5J1 315 aa16.02■□□□□ 0.16
COL4A1-204ENST00000543140 RBM23Q86U06 439 aaKnown RBP16.02■□□□□ 0.16
COL4A1-204ENST00000543140 ST13P5Q8NFI4 369 aaPredicted RBP16.02■□□□□ 0.16
COL4A1-204ENST00000543140 FAM8A1Q9UBU6 413 aa16.02■□□□□ 0.16
COL4A1-204ENST00000543140 RNF11Q9Y3C5 154 aa16.02■□□□□ 0.16
COL4A1-204ENST00000543140 SNX13Q9Y5W8 968 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms