RNA–Protein interactions for RNA: ENST00000540904.1

SNHG1-215, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 5

Gene SNHG1, Length 594 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-215ENST00000540904 WDR36Q8NI36 951 aaKnown RBP9.03□□□□□ -0.96
SNHG1-215ENST00000540904 JPH3Q8WXH2 748 aaPredicted RBP9.03□□□□□ -0.96
SNHG1-215ENST00000540904 ELMO1Q92556 727 aa9.03□□□□□ -0.96
SNHG1-215ENST00000540904 ZNF669Q96BR6 464 aaPredicted RBP9.03□□□□□ -0.96
SNHG1-215ENST00000540904 LIN37Q96GY3 246 aaPredicted RBP9.03□□□□□ -0.96
SNHG1-215ENST00000540904 CCDC74BQ96LY2 380 aa9.03□□□□□ -0.96
SNHG1-215ENST00000540904 INSM2Q96T92 566 aaPredicted RBP9.03□□□□□ -0.96
SNHG1-215ENST00000540904 CMKLR1Q99788 373 aa9.03□□□□□ -0.96
SNHG1-215ENST00000540904 TRIM31Q9BZY9 425 aa9.03□□□□□ -0.96
SNHG1-215ENST00000540904 COG4Q9H9E3 785 aa9.03□□□□□ -0.96
SNHG1-215ENST00000540904 UCK1Q9HA47 277 aa9.03□□□□□ -0.96
SNHG1-215ENST00000540904 IL1RAPL1Q9NZN1 696 aa9.03□□□□□ -0.96
SNHG1-215ENST00000540904 DKK4Q9UBT3 224 aa9.03□□□□□ -0.96
SNHG1-215ENST00000540904 RAXQ9Y2V3 346 aa9.03□□□□□ -0.96
SNHG1-215ENST00000540904 LOXL2Q9Y4K0 774 aa9.03□□□□□ -0.96
SNHG1-215ENST00000540904 BPTFQ12830 3046 aa9.02□□□□□ -0.96
SNHG1-215ENST00000540904 ZNF106Q9H2Y7 1883 aaKnown RBP9.02□□□□□ -0.96
SNHG1-215ENST00000540904 RP1P56715 2156 aa9.02□□□□□ -0.97
SNHG1-215ENST00000540904 MYLKQ15746 1914 aa9.02□□□□□ -0.97
SNHG1-215ENST00000540904 ARHGEF17Q96PE2 2063 aaPredicted RBP9.02□□□□□ -0.97
SNHG1-215ENST00000540904 FAM237BA0A1B0GVD1 139 aa9.02□□□□□ -0.97
SNHG1-215ENST00000540904 IQCF5A8MTL0 148 aa9.02□□□□□ -0.97
SNHG1-215ENST00000540904 A8MU76 341 aa9.02□□□□□ -0.97
SNHG1-215ENST00000540904 F8W8V4 182 aa9.02□□□□□ -0.97
SNHG1-215ENST00000540904 IFRD1O00458 451 aaPredicted RBP9.02□□□□□ -0.97
SNHG1-215ENST00000540904 PRMT5O14744 637 aaPredicted RBP9.02□□□□□ -0.97
SNHG1-215ENST00000540904 PLD2O14939 933 aa9.02□□□□□ -0.97
SNHG1-215ENST00000540904 NDUFS3O75489 264 aa9.02□□□□□ -0.97
SNHG1-215ENST00000540904 TNFSF15O95150 251 aa9.02□□□□□ -0.97
SNHG1-215ENST00000540904 GSTM1P09488 218 aa9.02□□□□□ -0.97
SNHG1-215ENST00000540904 IVDP26440 423 aa9.02□□□□□ -0.97
SNHG1-215ENST00000540904 RBMS1P29558 406 aaKnown RBP9.02□□□□□ -0.97
SNHG1-215ENST00000540904 PDHA2P29803 388 aa9.02□□□□□ -0.97
SNHG1-215ENST00000540904 LIMK2P53671 638 aa9.02□□□□□ -0.97
SNHG1-215ENST00000540904 MRPS25P82663 173 aaKnown RBP9.02□□□□□ -0.97
SNHG1-215ENST00000540904 GSTM4Q03013 218 aa9.02□□□□□ -0.97
SNHG1-215ENST00000540904 BOP1Q14137 746 aaKnown RBP9.02□□□□□ -0.97
SNHG1-215ENST00000540904 PLCL1Q15111 1095 aa9.02□□□□□ -0.97
SNHG1-215ENST00000540904 TBC1D25Q3MII6 688 aa9.02□□□□□ -0.97
SNHG1-215ENST00000540904 ANKRD20A4Q4UJ75 823 aa9.02□□□□□ -0.97
SNHG1-215ENST00000540904 ZNF658BQ4V348 819 aaPredicted RBP9.02□□□□□ -0.97
SNHG1-215ENST00000540904 SYTL3Q4VX76 610 aa9.02□□□□□ -0.97
SNHG1-215ENST00000540904 SNAP47Q5SQN1 464 aa9.02□□□□□ -0.97
SNHG1-215ENST00000540904 ARMC3Q5W041 872 aa9.02□□□□□ -0.97
SNHG1-215ENST00000540904 PTRHD1Q6GMV3 140 aaKnown RBP9.02□□□□□ -0.97
SNHG1-215ENST00000540904 KIAA0930Q6ICG6 404 aaPredicted RBP9.02□□□□□ -0.97
SNHG1-215ENST00000540904 CAPRIN2Q6IMN6 1127 aaKnown RBP9.02□□□□□ -0.97
SNHG1-215ENST00000540904 MRNIPQ6NTE8 343 aa9.02□□□□□ -0.97
SNHG1-215ENST00000540904 TMEM71Q6P5X7 295 aa9.02□□□□□ -0.97
SNHG1-215ENST00000540904 SDCCAG8Q86SQ7 713 aaPredicted RBP9.02□□□□□ -0.97
SNHG1-215ENST00000540904 HOOK3Q86VS8 718 aa9.02□□□□□ -0.97
SNHG1-215ENST00000540904 LSMEM2Q8N112 164 aa9.02□□□□□ -0.97
SNHG1-215ENST00000540904 AGGF1Q8N302 714 aaeCLIP9.02□□□□□ -0.97
SNHG1-215ENST00000540904 SPATA4Q8NEY3 305 aa9.02□□□□□ -0.97
SNHG1-215ENST00000540904 ZNF592Q92610 1267 aa9.02□□□□□ -0.97
SNHG1-215ENST00000540904 TMEM159Q96B96 161 aa9.02□□□□□ -0.97
SNHG1-215ENST00000540904 PRR11Q96HE9 360 aaPredicted RBP9.02□□□□□ -0.97
SNHG1-215ENST00000540904 RMDN2Q96LZ7 410 aa9.02□□□□□ -0.97
SNHG1-215ENST00000540904 SLC46A1Q96NT5 459 aa9.02□□□□□ -0.97
SNHG1-215ENST00000540904 FCRL3Q96P31 734 aaPredicted RBP9.02□□□□□ -0.97
SNHG1-215ENST00000540904 DPYSL5Q9BPU6 564 aa9.02□□□□□ -0.97
SNHG1-215ENST00000540904 OR52A5Q9H2C5 316 aa9.02□□□□□ -0.97
SNHG1-215ENST00000540904 EPB41L1Q9H4G0 881 aa9.02□□□□□ -0.97
SNHG1-215ENST00000540904 OGFRQ9NZT2 677 aa9.02□□□□□ -0.97
SNHG1-215ENST00000540904 AKAP7Q9P0M2 348 aaPredicted RBP9.02□□□□□ -0.97
SNHG1-215ENST00000540904 PISDQ9UG56 409 aa9.02□□□□□ -0.97
SNHG1-215ENST00000540904 KLHL3Q9UH77 587 aa9.02□□□□□ -0.97
SNHG1-215ENST00000540904 PCDHGA8Q9Y5G5 932 aa9.02□□□□□ -0.97
SNHG1-215ENST00000540904 HEBP2Q9Y5Z4 205 aa9.02□□□□□ -0.97
SNHG1-215ENST00000540904 RPS6KL1Q9Y6S9 549 aa9.02□□□□□ -0.97
SNHG1-215ENST00000540904 FRYQ5TBA9 3013 aa9.02□□□□□ -0.97
SNHG1-215ENST00000540904 CEP295Q9C0D2 2601 aa9.01□□□□□ -0.97
SNHG1-215ENST00000540904 AKAP13Q12802 2813 aa9.01□□□□□ -0.97
SNHG1-215ENST00000540904 ZCWPW2A0A1B0GU75 182 aa9.01□□□□□ -0.97
SNHG1-215ENST00000540904 UBA6A0AVT1 1052 aaPredicted RBP9.01□□□□□ -0.97
SNHG1-215ENST00000540904 SRRM3A6NNA2 597 aaPredicted RBP9.01□□□□□ -0.97
SNHG1-215ENST00000540904 EFCAB8A8MWE9 144 aa9.01□□□□□ -0.97
SNHG1-215ENST00000540904 LIN7AO14910 233 aaPredicted RBP9.01□□□□□ -0.97
SNHG1-215ENST00000540904 PFDN6O15212 129 aa9.01□□□□□ -0.97
SNHG1-215ENST00000540904 CAPN5O15484 640 aaPredicted RBP9.01□□□□□ -0.97
SNHG1-215ENST00000540904 BANF1O75531 89 aa9.01□□□□□ -0.97
SNHG1-215ENST00000540904 DXOO77932 396 aaKnown RBP9.01□□□□□ -0.97
SNHG1-215ENST00000540904 THRAP10827 490 aa9.01□□□□□ -0.97
SNHG1-215ENST00000540904 ITIH1P19827 911 aa9.01□□□□□ -0.97
SNHG1-215ENST00000540904 ARCN1P48444 511 aaKnown RBP9.01□□□□□ -0.97
SNHG1-215ENST00000540904 ITGA8P53708 1063 aa9.01□□□□□ -0.97
SNHG1-215ENST00000540904 CSE1LP55060 971 aaKnown RBP9.01□□□□□ -0.97
SNHG1-215ENST00000540904 GFERP55789 205 aa9.01□□□□□ -0.97
SNHG1-215ENST00000540904 EIF3BP55884 814 aaKnown RBP9.01□□□□□ -0.97
SNHG1-215ENST00000540904 DHX9Q08211 1270 aaKnown RBP9.01□□□□□ -0.97
SNHG1-215ENST00000540904 C2orf54Q08AI8 447 aa9.01□□□□□ -0.97
SNHG1-215ENST00000540904 RPA4Q13156 261 aa9.01□□□□□ -0.97
SNHG1-215ENST00000540904 EIF3IQ13347 325 aaKnown RBP9.01□□□□□ -0.97
SNHG1-215ENST00000540904 TRA2AQ13595 282 aaKnown RBP eCLIP9.01□□□□□ -0.976e-56■□□□□ 10.4
SNHG1-215ENST00000540904 THOC5Q13769 683 aaKnown RBP9.01□□□□□ -0.97
SNHG1-215ENST00000540904 C16orf72Q14CZ0 275 aa9.01□□□□□ -0.97
SNHG1-215ENST00000540904 MORF4L2Q15014 288 aa9.01□□□□□ -0.97
SNHG1-215ENST00000540904 BBS9Q3SYG4 887 aa9.01□□□□□ -0.97
SNHG1-215ENST00000540904 MSS51Q4VC12 460 aa9.01□□□□□ -0.97
SNHG1-215ENST00000540904 DNAJC21Q5F1R6 531 aaKnown RBP9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms