RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 SERPINA9Q86WD7 417 aa7.31□□□□□ -1.24
CD44-228ENST00000528455 DCP2Q8IU60 420 aaKnown RBP7.31□□□□□ -1.24
CD44-228ENST00000528455 PIANPQ8IYJ0 282 aa7.31□□□□□ -1.24
CD44-228ENST00000528455 NXPE1Q8N323 547 aa7.31□□□□□ -1.24
CD44-228ENST00000528455 TP53I13Q8NBR0 393 aaPredicted RBP7.31□□□□□ -1.24
CD44-228ENST00000528455 DENND6BQ8NEG7 585 aa7.31□□□□□ -1.24
CD44-228ENST00000528455 UHMK1Q8TAS1 419 aaKnown RBP7.31□□□□□ -1.24
CD44-228ENST00000528455 DCAKDQ8WVC6 231 aa7.31□□□□□ -1.24
CD44-228ENST00000528455 GAB3Q8WWW8 586 aa7.31□□□□□ -1.24
CD44-228ENST00000528455 BIRC7Q96CA5 298 aa7.31□□□□□ -1.24
CD44-228ENST00000528455 MTBPQ96DY7 904 aa7.31□□□□□ -1.24
CD44-228ENST00000528455 NUS1Q96E22 293 aa7.31□□□□□ -1.24
CD44-228ENST00000528455 PGM2Q96G03 612 aa7.31□□□□□ -1.24
CD44-228ENST00000528455 HIC2Q96JB3 615 aa7.31□□□□□ -1.24
CD44-228ENST00000528455 KLF6Q99612 283 aaPredicted RBP7.31□□□□□ -1.24
CD44-228ENST00000528455 GPR174Q9BXC1 333 aa7.31□□□□□ -1.24
CD44-228ENST00000528455 TEX101Q9BY14 249 aa7.31□□□□□ -1.24
CD44-228ENST00000528455 MIR1-1HGQ9H1L0 117 aa7.31□□□□□ -1.24
CD44-228ENST00000528455 DUSP15Q9H1R2 295 aaPredicted RBP7.31□□□□□ -1.24
CD44-228ENST00000528455 CNOT6Q9ULM6 557 aaKnown RBP7.31□□□□□ -1.24
CD44-228ENST00000528455 GPR34Q9UPC5 381 aa7.31□□□□□ -1.24
CD44-228ENST00000528455 PCDHB1Q9Y5F3 818 aa7.31□□□□□ -1.24
CD44-228ENST00000528455 PLXNB3Q9ULL4 1909 aa7.31□□□□□ -1.24
CD44-228ENST00000528455 IQANK1A0A1B0GTG1 560 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 TLDC2A0PJX2 215 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 OR51F1A6NGY5 319 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 GOLGA6L10A6NI86 522 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 GPR89AB7ZAQ6 455 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 H3BMM5 538 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 AGPSO00116 658 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 QSOX1O00391 747 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 CCL22O00626 93 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 PRMT5O14744 637 aaPredicted RBP7.3□□□□□ -1.24
CD44-228ENST00000528455 FPGTO14772 594 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 SLC31A1O15431 190 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 VEGFDO43915 354 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 FOXD2O60548 495 aaPredicted RBP7.3□□□□□ -1.24
CD44-228ENST00000528455 LRP3O75074 770 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 AP2A2O94973 939 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 SLC4A1P02730 911 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 ESR1P03372 595 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 IGHV4-34P06331 123 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 MYZAPP0CAP1 466 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 GPR89BP0CG08 455 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 HNRNPA2B1P22626 353 aaKnown RBP7.3□□□□□ -1.24
CD44-228ENST00000528455 RPS3P23396 243 aaKnown RBP eCLIP7.3□□□□□ -1.24
CD44-228ENST00000528455 ACRV1P26436 265 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 SLC1A2P43004 574 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 CDKN1CP49918 316 aaPredicted RBP7.3□□□□□ -1.24
CD44-228ENST00000528455 POU4F1Q01851 419 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 ZNF844Q08AG5 666 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 SRSF5Q13243 272 aaKnown RBP7.3□□□□□ -1.24
CD44-228ENST00000528455 FGL2Q14314 439 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 INPP5AQ14642 412 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 TNFAIP8L3Q5GJ75 292 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 UBAP2Q5T6F2 1119 aaKnown RBP7.3□□□□□ -1.24
CD44-228ENST00000528455 ZNF470Q6ECI4 717 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 CNSTQ6PJW8 725 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 PACS1Q6VY07 963 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 TAOK1Q7L7X3 1001 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 CCDC91Q7Z6B0 441 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 ZC3HC1Q86WB0 502 aaKnown RBP7.3□□□□□ -1.24
CD44-228ENST00000528455 CACUL1Q86Y37 369 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 DENND6AQ8IWF6 608 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 RBFAQ8N0V3 343 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 DDHD1Q8NEL9 900 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 OR2W6PQ8NHA6 318 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 RLN3Q8WXF3 142 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 DNASE2BQ8WZ79 361 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 GLYATL1Q969I3 302 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 UTP4Q969X6 686 aaKnown RBP7.3□□□□□ -1.24
CD44-228ENST00000528455 COX14Q96I36 57 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 ZNF514Q96K75 400 aaPredicted RBP7.3□□□□□ -1.24
CD44-228ENST00000528455 ZC3H10Q96K80 434 aaKnown RBP7.3□□□□□ -1.24
CD44-228ENST00000528455 BMFQ96LC9 184 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 BIRC8Q96P09 236 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 FANCD2OSQ96PS1 177 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 RUFY1Q96T51 708 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 PAFAH2Q99487 392 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 COPS8Q99627 209 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 RBBP8Q99708 897 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 APOOQ9BUR5 198 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 TPSD1Q9BZJ3 242 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 STMN4Q9H169 189 aaPredicted RBP7.3□□□□□ -1.24
CD44-228ENST00000528455 P2RY12Q9H244 342 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 RHOJQ9H4E5 214 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 FAM96AQ9H5X1 160 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 RMI1Q9H9A7 625 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 MBNL1Q9NR56 388 aaKnown RBP7.3□□□□□ -1.24
CD44-228ENST00000528455 ZNF446Q9NWS9 450 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 EURLQ9NYK6 297 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 IL1RAPL1Q9NZN1 696 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 MARCH4Q9P2E8 410 aaPredicted RBP7.3□□□□□ -1.24
CD44-228ENST00000528455 KLHL42Q9P2K6 505 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 PSMC3IPQ9P2W1 217 aaPredicted RBP7.3□□□□□ -1.24
CD44-228ENST00000528455 LGALS13Q9UHV8 139 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 CD84Q9UIB8 345 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 CRLS1Q9UJA2 301 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 TMPRSS11EQ9UL52 423 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 ZBTB32Q9Y2Y4 487 aaPredicted RBP7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms