RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP20.9■□□□□ 0.94
VPS28-205ENST00000526204 ANKRD33BA6NCL7 494 aa20.9■□□□□ 0.94
VPS28-205ENST00000526204 ANKRD28O15084 1053 aa20.9■□□□□ 0.94
VPS28-205ENST00000526204 ALPIP09923 528 aa20.9■□□□□ 0.94
VPS28-205ENST00000526204 CDH1P12830 882 aa20.9■□□□□ 0.94
VPS28-205ENST00000526204 TRAF3Q13114 568 aa20.9■□□□□ 0.94
VPS28-205ENST00000526204 MAD2L1Q13257 205 aaPredicted RBP20.9■□□□□ 0.94
VPS28-205ENST00000526204 PWP1Q13610 501 aa20.9■□□□□ 0.94
VPS28-205ENST00000526204 CDH18Q13634 790 aa20.9■□□□□ 0.94
VPS28-205ENST00000526204 TCTN1Q2MV58 587 aa20.9■□□□□ 0.94
VPS28-205ENST00000526204 HABP4Q5JVS0 413 aaKnown RBP20.9■□□□□ 0.94
VPS28-205ENST00000526204 ABRAXAS1Q6UWZ7 409 aa20.9■□□□□ 0.94
VPS28-205ENST00000526204 RNF165Q6ZSG1 346 aa20.9■□□□□ 0.94
VPS28-205ENST00000526204 PATL1Q86TB9 770 aaKnown RBP20.9■□□□□ 0.94
VPS28-205ENST00000526204 OR8J3Q8NGG0 315 aa20.9■□□□□ 0.94
VPS28-205ENST00000526204 TMIGD2Q96BF3 282 aa20.9■□□□□ 0.94
VPS28-205ENST00000526204 ACTL8Q9H568 366 aa20.9■□□□□ 0.94
VPS28-205ENST00000526204 ETAA1Q9NY74 926 aa20.9■□□□□ 0.94
VPS28-205ENST00000526204 FADS3Q9Y5Q0 445 aa20.9■□□□□ 0.94
VPS28-205ENST00000526204 A0A1B0GVG6 124 aa20.89■□□□□ 0.94
VPS28-205ENST00000526204 RGS14O43566 566 aa20.89■□□□□ 0.94
VPS28-205ENST00000526204 KATNA1O75449 491 aa20.89■□□□□ 0.94
VPS28-205ENST00000526204 CNPP09543 421 aaKnown RBP20.89■□□□□ 0.94
VPS28-205ENST00000526204 VARSP26640 1264 aaKnown RBP20.89■□□□□ 0.94
VPS28-205ENST00000526204 CSKP41240 450 aa20.89■□□□□ 0.94
VPS28-205ENST00000526204 MAPK8P45983 427 aa20.89■□□□□ 0.94
VPS28-205ENST00000526204 OR4D2P58180 307 aa20.89■□□□□ 0.94
VPS28-205ENST00000526204 NFATC2Q13469 925 aa20.89■□□□□ 0.94
VPS28-205ENST00000526204 ABRAXAS2Q15018 415 aa20.89■□□□□ 0.94
VPS28-205ENST00000526204 C18orf21Q32NC0 220 aaPredicted RBP20.89■□□□□ 0.94
VPS28-205ENST00000526204 BPIFB1Q8TDL5 484 aa20.89■□□□□ 0.94
VPS28-205ENST00000526204 ZBTB18Q99592 522 aa20.89■□□□□ 0.94
VPS28-205ENST00000526204 NSUN3Q9H649 340 aaKnown RBP20.89■□□□□ 0.94
VPS28-205ENST00000526204 ASB8Q9H765 288 aa20.89■□□□□ 0.94
VPS28-205ENST00000526204 GMNNO75496 209 aa20.89■□□□□ 0.93
VPS28-205ENST00000526204 PCSK6P29122 969 aa20.89■□□□□ 0.93
VPS28-205ENST00000526204 CDH15P55291 814 aa20.89■□□□□ 0.93
VPS28-205ENST00000526204 RFTN2Q52LD8 501 aaPredicted RBP20.89■□□□□ 0.93
VPS28-205ENST00000526204 RETSATQ6NUM9 610 aa20.89■□□□□ 0.93
VPS28-205ENST00000526204 ALG14Q96F25 216 aa20.89■□□□□ 0.93
VPS28-205ENST00000526204 IGSF21Q96ID5 467 aa20.89■□□□□ 0.93
VPS28-205ENST00000526204 PPM1MQ96MI6 270 aa20.89■□□□□ 0.93
VPS28-205ENST00000526204 RNF145Q96MT1 663 aa20.89■□□□□ 0.93
VPS28-205ENST00000526204 SEPHS2Q99611 448 aa20.89■□□□□ 0.93
VPS28-205ENST00000526204 C2orf49Q9BVC5 232 aaPredicted RBP20.89■□□□□ 0.93
VPS28-205ENST00000526204 VN1R3Q9BXE9 311 aa20.89■□□□□ 0.93
VPS28-205ENST00000526204 YTHDF1Q9BYJ9 559 aaKnown RBP20.89■□□□□ 0.93
VPS28-205ENST00000526204 EIF3LQ9Y262 564 aaKnown RBP20.89■□□□□ 0.93
VPS28-205ENST00000526204 ANGPTL3Q9Y5C1 460 aa20.89■□□□□ 0.93
VPS28-205ENST00000526204 SLC28A1O00337 649 aa20.88■□□□□ 0.93
VPS28-205ENST00000526204 GAPDHSO14556 408 aaPredicted RBP20.88■□□□□ 0.93
VPS28-205ENST00000526204 SLC25A14O95258 325 aaPredicted RBP20.88■□□□□ 0.93
VPS28-205ENST00000526204 HSPA7P48741 367 aa20.88■□□□□ 0.93
VPS28-205ENST00000526204 BCL2L1Q07817 233 aa20.88■□□□□ 0.93
VPS28-205ENST00000526204 CRY1Q16526 586 aa20.88■□□□□ 0.93
VPS28-205ENST00000526204 CYBRD1Q53TN4 286 aa20.88■□□□□ 0.93
VPS28-205ENST00000526204 SULT1C3Q6IMI6 304 aa20.88■□□□□ 0.93
VPS28-205ENST00000526204 ARHGAP22Q7Z5H3 698 aa20.88■□□□□ 0.93
VPS28-205ENST00000526204 GPR141Q7Z602 305 aa20.88■□□□□ 0.93
VPS28-205ENST00000526204 MAGEE2Q8TD90 523 aaPredicted RBP20.88■□□□□ 0.93
VPS28-205ENST00000526204 CCL27Q9Y4X3 112 aa20.88■□□□□ 0.93
VPS28-205ENST00000526204 POLR3HQ9Y535 204 aaPredicted RBP20.88■□□□□ 0.93
VPS28-205ENST00000526204 TRBV5-4A0A0C4DH59 114 aa20.87■□□□□ 0.93
VPS28-205ENST00000526204 C1orf232A0A0U1RR37 186 aa20.87■□□□□ 0.93
VPS28-205ENST00000526204 ZNF701M0R085 212 aaPredicted RBP20.87■□□□□ 0.93
VPS28-205ENST00000526204 TAPBPO15533 448 aa20.87■□□□□ 0.93
VPS28-205ENST00000526204 KCNH1O95259 989 aa20.87■□□□□ 0.93
VPS28-205ENST00000526204 GUCA1CO95843 209 aa20.87■□□□□ 0.93
VPS28-205ENST00000526204 TRBC1P01850 177 aa20.87■□□□□ 0.93
VPS28-205ENST00000526204 INHAP05111 366 aa20.87■□□□□ 0.93
VPS28-205ENST00000526204 SLC2A4P14672 509 aa20.87■□□□□ 0.93
VPS28-205ENST00000526204 ZBED5Q49AG3 693 aa20.87■□□□□ 0.93
VPS28-205ENST00000526204 RALGPS2Q86X27 583 aaPredicted RBP20.87■□□□□ 0.93
VPS28-205ENST00000526204 RIMKLAQ8IXN7 391 aa20.87■□□□□ 0.93
VPS28-205ENST00000526204 VPS50Q96JG6 964 aa20.87■□□□□ 0.93
VPS28-205ENST00000526204 EGFL8Q99944 293 aa20.87■□□□□ 0.93
VPS28-205ENST00000526204 CD244Q9BZW8 370 aa20.87■□□□□ 0.93
VPS28-205ENST00000526204 PIF1Q9H611 641 aa20.87■□□□□ 0.93
VPS28-205ENST00000526204 IL26Q9NPH9 171 aa20.87■□□□□ 0.93
VPS28-205ENST00000526204 OPTCQ9UBM4 332 aa20.87■□□□□ 0.93
VPS28-205ENST00000526204 ZMYM5Q9UJ78 669 aa20.87■□□□□ 0.93
VPS28-205ENST00000526204 TSR3Q9UJK0 312 aaKnown RBP20.87■□□□□ 0.93
VPS28-205ENST00000526204 H0YAE9 185 aa20.87■□□□□ 0.93
VPS28-205ENST00000526204 GFRA2O00451 464 aa20.87■□□□□ 0.93
VPS28-205ENST00000526204 DEAF1O75398 565 aaPredicted RBP20.87■□□□□ 0.93
VPS28-205ENST00000526204 WDR47O94967 919 aa20.87■□□□□ 0.93
VPS28-205ENST00000526204 ANXA6P08133 673 aa20.87■□□□□ 0.93
VPS28-205ENST00000526204 ACRV1P26436 265 aa20.87■□□□□ 0.93
VPS28-205ENST00000526204 SOX11P35716 441 aa20.87■□□□□ 0.93
VPS28-205ENST00000526204 CSNK1DP48730 415 aa20.87■□□□□ 0.93
VPS28-205ENST00000526204 GPR33Q49SQ1 333 aa20.87■□□□□ 0.93
VPS28-205ENST00000526204 FAM98BQ52LJ0 330 aaKnown RBP20.87■□□□□ 0.93
VPS28-205ENST00000526204 MACC1Q6ZN28 852 aa20.87■□□□□ 0.93
VPS28-205ENST00000526204 ZBTB2Q8N680 514 aa20.87■□□□□ 0.93
VPS28-205ENST00000526204 GLB1L3Q8NCI6 653 aaPredicted RBP20.87■□□□□ 0.93
VPS28-205ENST00000526204 UBTD2Q8WUN7 234 aa20.87■□□□□ 0.93
VPS28-205ENST00000526204 RPL10LQ96L21 214 aaKnown RBP20.87■□□□□ 0.93
VPS28-205ENST00000526204 CCDC115Q96NT0 180 aa20.87■□□□□ 0.93
VPS28-205ENST00000526204 HBEGFQ99075 208 aa20.87■□□□□ 0.93
VPS28-205ENST00000526204 BOCQ9BWV1 1114 aa20.87■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms