RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 GPR39O43194 453 aa9.96□□□□□ -0.82
VPS28-204ENST00000526054 GRID2O43424 1007 aa9.96□□□□□ -0.82
VPS28-204ENST00000526054 DNAJC6O75061 913 aa9.96□□□□□ -0.82
VPS28-204ENST00000526054 MTX2O75431 263 aa9.96□□□□□ -0.82
VPS28-204ENST00000526054 CDK14O94921 469 aa9.96□□□□□ -0.82
VPS28-204ENST00000526054 SEC31AO94979 1220 aaKnown RBP9.96□□□□□ -0.82
VPS28-204ENST00000526054 ZNF8P17098 575 aaPredicted RBP9.96□□□□□ -0.82
VPS28-204ENST00000526054 PAMP19021 973 aa9.96□□□□□ -0.82
VPS28-204ENST00000526054 IVDP26440 423 aa9.96□□□□□ -0.82
VPS28-204ENST00000526054 CD1CP29017 333 aa9.96□□□□□ -0.82
VPS28-204ENST00000526054 CSF2RBP32927 897 aa9.96□□□□□ -0.82
VPS28-204ENST00000526054 MAGEA3P43357 314 aa9.96□□□□□ -0.82
VPS28-204ENST00000526054 PPM1FP49593 454 aaPredicted RBP9.96□□□□□ -0.82
VPS28-204ENST00000526054 ARSDP51689 593 aa9.96□□□□□ -0.82
VPS28-204ENST00000526054 LIMK2P53671 638 aa9.96□□□□□ -0.82
VPS28-204ENST00000526054 ITGA8P53708 1063 aa9.96□□□□□ -0.82
VPS28-204ENST00000526054 CRADDP78560 199 aa9.96□□□□□ -0.82
VPS28-204ENST00000526054 ACVR1Q04771 509 aa9.96□□□□□ -0.82
VPS28-204ENST00000526054 CALCOCO2Q13137 446 aa9.96□□□□□ -0.82
VPS28-204ENST00000526054 TRA2AQ13595 282 aaKnown RBP eCLIP9.96□□□□□ -0.82
VPS28-204ENST00000526054 PYCR3Q53H96 274 aa9.96□□□□□ -0.82
VPS28-204ENST00000526054 ZNF648Q5T619 568 aaPredicted RBP9.96□□□□□ -0.82
VPS28-204ENST00000526054 HIBCHQ6NVY1 386 aaPredicted RBP9.96□□□□□ -0.82
VPS28-204ENST00000526054 ZNF574Q6ZN55 896 aaPredicted RBP9.96□□□□□ -0.82
VPS28-204ENST00000526054 TAS2R42Q7RTR8 314 aa9.96□□□□□ -0.82
VPS28-204ENST00000526054 LRRTM4Q86VH4 590 aa9.96□□□□□ -0.82
VPS28-204ENST00000526054 NXPE1Q8N323 547 aa9.96□□□□□ -0.82
VPS28-204ENST00000526054 CEP112Q8N8E3 955 aa9.96□□□□□ -0.82
VPS28-204ENST00000526054 AGBL5Q8NDL9 886 aa9.96□□□□□ -0.82
VPS28-204ENST00000526054 OR4D9Q8NGE8 314 aa9.96□□□□□ -0.82
VPS28-204ENST00000526054 OR6P1Q8NGX9 317 aa9.96□□□□□ -0.82
VPS28-204ENST00000526054 JPH3Q8WXH2 748 aaPredicted RBP9.96□□□□□ -0.82
VPS28-204ENST00000526054 HDAC10Q969S8 669 aa9.96□□□□□ -0.82
VPS28-204ENST00000526054 PMEPA1Q969W9 287 aa9.96□□□□□ -0.82
VPS28-204ENST00000526054 TTC1Q99614 292 aa9.96□□□□□ -0.82
VPS28-204ENST00000526054 COPS8Q99627 209 aa9.96□□□□□ -0.82
VPS28-204ENST00000526054 ERP44Q9BS26 406 aa9.96□□□□□ -0.82
VPS28-204ENST00000526054 TRIM4Q9C037 500 aa9.96□□□□□ -0.82
VPS28-204ENST00000526054 ARFGAP3Q9NP61 516 aa9.96□□□□□ -0.82
VPS28-204ENST00000526054 CHRAC1Q9NRG0 131 aa9.96□□□□□ -0.82
VPS28-204ENST00000526054 KCNK4Q9NYG8 393 aa9.96□□□□□ -0.82
VPS28-204ENST00000526054 SLC2A6Q9UGQ3 507 aa9.96□□□□□ -0.82
VPS28-204ENST00000526054 ZNHIT2Q9UHR6 403 aa9.96□□□□□ -0.82
VPS28-204ENST00000526054 ANAPC5Q9UJX4 755 aa9.96□□□□□ -0.82
VPS28-204ENST00000526054 TMPRSS11EQ9UL52 423 aa9.96□□□□□ -0.82
VPS28-204ENST00000526054 SNX24Q9Y343 169 aa9.96□□□□□ -0.82
VPS28-204ENST00000526054 ST14Q9Y5Y6 855 aa9.96□□□□□ -0.82
VPS28-204ENST00000526054 BOD1L1Q8NFC6 3051 aa9.96□□□□□ -0.82
VPS28-204ENST00000526054 IGHV1OR21-1A0A087WYE8 117 aa9.95□□□□□ -0.82
VPS28-204ENST00000526054 TRBV5-4A0A0C4DH59 114 aa9.95□□□□□ -0.82
VPS28-204ENST00000526054 FAM237BA0A1B0GVD1 139 aa9.95□□□□□ -0.82
VPS28-204ENST00000526054 AGAP14A8MT82 685 aa9.95□□□□□ -0.82
VPS28-204ENST00000526054 CHUKO15111 745 aa9.95□□□□□ -0.82
VPS28-204ENST00000526054 KMOO15229 486 aa9.95□□□□□ -0.82
VPS28-204ENST00000526054 PPM1DO15297 605 aa9.95□□□□□ -0.82
VPS28-204ENST00000526054 AVILO75366 819 aa9.95□□□□□ -0.82
VPS28-204ENST00000526054 WISP1O95388 367 aa9.95□□□□□ -0.82
VPS28-204ENST00000526054 GOT2P00505 430 aaKnown RBP9.95□□□□□ -0.82
VPS28-204ENST00000526054 THRAP10827 490 aa9.95□□□□□ -0.82
VPS28-204ENST00000526054 FGF3P11487 239 aaPredicted RBP9.95□□□□□ -0.82
VPS28-204ENST00000526054 SFTPCP11686 197 aa9.95□□□□□ -0.82
VPS28-204ENST00000526054 ACP5P13686 325 aa9.95□□□□□ -0.82
VPS28-204ENST00000526054 VCLP18206 1134 aa9.95□□□□□ -0.82
VPS28-204ENST00000526054 WT1P19544 449 aaPredicted RBP9.95□□□□□ -0.82
VPS28-204ENST00000526054 ACRV1P26436 265 aa9.95□□□□□ -0.82
VPS28-204ENST00000526054 NMBRP28336 390 aa9.95□□□□□ -0.82
VPS28-204ENST00000526054 FOXN2P32314 431 aa9.95□□□□□ -0.82
VPS28-204ENST00000526054 CSTF2P33240 577 aaKnown RBP eCLIP9.95□□□□□ -0.82
VPS28-204ENST00000526054 PPARGP37231 505 aaPredicted RBP9.95□□□□□ -0.82
VPS28-204ENST00000526054 RPL21P46778 160 aaKnown RBP9.95□□□□□ -0.82
VPS28-204ENST00000526054 ARL4CP56559 192 aa9.95□□□□□ -0.82
VPS28-204ENST00000526054 CYP4F2P78329 520 aa9.95□□□□□ -0.82
VPS28-204ENST00000526054 GPLD1P80108 840 aa9.95□□□□□ -0.82
VPS28-204ENST00000526054 MRPS25P82663 173 aaKnown RBP9.95□□□□□ -0.82
VPS28-204ENST00000526054 KCNC4Q03721 635 aa9.95□□□□□ -0.82
VPS28-204ENST00000526054 TMEM115Q12893 351 aaPredicted RBP9.95□□□□□ -0.82
VPS28-204ENST00000526054 ITIH4Q14624 930 aa9.95□□□□□ -0.82
VPS28-204ENST00000526054 KHDC1Q4VXA5 237 aaKnown RBP9.95□□□□□ -0.82
VPS28-204ENST00000526054 FASTKD1Q53R41 847 aaKnown RBP9.95□□□□□ -0.82
VPS28-204ENST00000526054 AARS2Q5JTZ9 985 aaKnown RBP9.95□□□□□ -0.82
VPS28-204ENST00000526054 LYPLAL1Q5VWZ2 237 aa9.95□□□□□ -0.82
VPS28-204ENST00000526054 NKAIN2Q5VXU1 208 aa9.95□□□□□ -0.82
VPS28-204ENST00000526054 KIAA0930Q6ICG6 404 aaPredicted RBP9.95□□□□□ -0.82
VPS28-204ENST00000526054 CRTC3Q6UUV7 619 aa9.95□□□□□ -0.82
VPS28-204ENST00000526054 SERPINA9Q86WD7 417 aa9.95□□□□□ -0.82
VPS28-204ENST00000526054 FAM129CQ86XR2 697 aa9.95□□□□□ -0.82
VPS28-204ENST00000526054 TRAPPC5Q8IUR0 188 aa9.95□□□□□ -0.82
VPS28-204ENST00000526054 PDIK1LQ8N165 341 aa9.95□□□□□ -0.82
VPS28-204ENST00000526054 MPP5Q8N3R9 675 aa9.95□□□□□ -0.82
VPS28-204ENST00000526054 OTUD6BQ8N6M0 293 aa9.95□□□□□ -0.82
VPS28-204ENST00000526054 IL22RA1Q8N6P7 574 aa9.95□□□□□ -0.82
VPS28-204ENST00000526054 OR4L1Q8NH43 312 aa9.95□□□□□ -0.82
VPS28-204ENST00000526054 ART4Q93070 314 aa9.95□□□□□ -0.82
VPS28-204ENST00000526054 ZNF669Q96BR6 464 aaPredicted RBP9.95□□□□□ -0.82
VPS28-204ENST00000526054 STAMBPL1Q96FJ0 436 aa9.95□□□□□ -0.82
VPS28-204ENST00000526054 SGSM3Q96HU1 749 aa9.95□□□□□ -0.82
VPS28-204ENST00000526054 ZNF514Q96K75 400 aaPredicted RBP9.95□□□□□ -0.82
VPS28-204ENST00000526054 ZNF778Q96MU6 729 aa9.95□□□□□ -0.82
VPS28-204ENST00000526054 TAAR9Q96RI9 348 aa9.95□□□□□ -0.82
VPS28-204ENST00000526054 DPYSL5Q9BPU6 564 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms