RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-222ENST00000526025 PADI4Q9UM07 663 aa20.34■□□□□ 0.85
CD44-222ENST00000526025 SNX2O60749 519 aa20.33■□□□□ 0.85
CD44-222ENST00000526025 GPC4O75487 556 aa20.33■□□□□ 0.85
CD44-222ENST00000526025 DKK1O94907 266 aa20.33■□□□□ 0.85
CD44-222ENST00000526025 KCNK5O95279 499 aa20.33■□□□□ 0.85
CD44-222ENST00000526025 SLC35G4P0C7Q5 338 aa20.33■□□□□ 0.85
CD44-222ENST00000526025 BRAFP15056 766 aa20.33■□□□□ 0.85
CD44-222ENST00000526025 GLB1P16278 677 aa20.33■□□□□ 0.85
CD44-222ENST00000526025 AOAHP28039 575 aa20.33■□□□□ 0.85
CD44-222ENST00000526025 ACADVLP49748 655 aa20.33■□□□□ 0.85
CD44-222ENST00000526025 NOVA1P51513 510 aaKnown RBP20.33■□□□□ 0.85
CD44-222ENST00000526025 NR1D2Q14995 579 aa20.33■□□□□ 0.85
CD44-222ENST00000526025 TMED2Q15363 201 aa20.33■□□□□ 0.85
CD44-222ENST00000526025 KYNUQ16719 465 aa20.33■□□□□ 0.85
CD44-222ENST00000526025 CAPN12Q6ZSI9 719 aa20.33■□□□□ 0.85
CD44-222ENST00000526025 TRMT10CQ7L0Y3 403 aaKnown RBP20.33■□□□□ 0.85
CD44-222ENST00000526025 ZNF438Q7Z4V0 828 aa20.33■□□□□ 0.85
CD44-222ENST00000526025 ARL14Q8N4G2 192 aa20.33■□□□□ 0.85
CD44-222ENST00000526025 MCMBPQ9BTE3 642 aa20.33■□□□□ 0.85
CD44-222ENST00000526025 AARSD1Q9BTE6 412 aaKnown RBP20.33■□□□□ 0.85
CD44-222ENST00000526025 TXLNGYQ9BZA5 131 aa20.33■□□□□ 0.85
CD44-222ENST00000526025 OR52A5Q9H2C5 316 aa20.33■□□□□ 0.85
CD44-222ENST00000526025 STN1Q9H668 368 aaKnown RBP20.33■□□□□ 0.85
CD44-222ENST00000526025 SLCO2B1O94956 709 aa20.32■□□□□ 0.84
CD44-222ENST00000526025 TRIM16O95361 564 aa20.32■□□□□ 0.84
CD44-222ENST00000526025 APOA4P06727 396 aa20.32■□□□□ 0.84
CD44-222ENST00000526025 TUBBP07437 444 aa20.32■□□□□ 0.84
CD44-222ENST00000526025 ABHD2P08910 425 aa20.32■□□□□ 0.84
CD44-222ENST00000526025 ATP5DP30049 168 aa20.32■□□□□ 0.84
CD44-222ENST00000526025 CCR7P32248 378 aa20.32■□□□□ 0.84
CD44-222ENST00000526025 CSE1LP55060 971 aaKnown RBP20.32■□□□□ 0.84
CD44-222ENST00000526025 UBE2IP63279 158 aaKnown RBP20.32■□□□□ 0.84
CD44-222ENST00000526025 SYTL3Q4VX76 610 aa20.32■□□□□ 0.84
CD44-222ENST00000526025 PLEKHS1Q5SXH7 462 aa20.32■□□□□ 0.84
CD44-222ENST00000526025 CHCHD2P9Q5T1J5 151 aaPredicted RBP20.32■□□□□ 0.84
CD44-222ENST00000526025 CAPRIN2Q6IMN6 1127 aaKnown RBP20.32■□□□□ 0.84
CD44-222ENST00000526025 ZNF549Q6P9A3 640 aa20.32■□□□□ 0.84
CD44-222ENST00000526025 CNSTQ6PJW8 725 aa20.32■□□□□ 0.84
CD44-222ENST00000526025 CCNI2Q6ZMN8 369 aaPredicted RBP20.32■□□□□ 0.84
CD44-222ENST00000526025 SLC9B2Q86UD5 537 aa20.32■□□□□ 0.84
CD44-222ENST00000526025 RBM12BQ8IXT5 1001 aaKnown RBP20.32■□□□□ 0.84
CD44-222ENST00000526025 LKAAEAR1Q8TD35 194 aa20.32■□□□□ 0.84
CD44-222ENST00000526025 SLC37A2Q8TED4 501 aa20.32■□□□□ 0.84
CD44-222ENST00000526025 FBF1Q8TES7 1133 aa20.32■□□□□ 0.84
CD44-222ENST00000526025 TMEM159Q96B96 161 aa20.32■□□□□ 0.84
CD44-222ENST00000526025 CPNE1Q99829 537 aa20.32■□□□□ 0.84
CD44-222ENST00000526025 UCK1Q9HA47 277 aa20.32■□□□□ 0.84
CD44-222ENST00000526025 SMYD2Q9NRG4 433 aa20.32■□□□□ 0.84
CD44-222ENST00000526025 POT1Q9NUX5 634 aa20.32■□□□□ 0.84
CD44-222ENST00000526025 IQCF5A8MTL0 148 aa20.31■□□□□ 0.84
CD44-222ENST00000526025 RPL10P27635 214 aaKnown RBP20.31■□□□□ 0.84
CD44-222ENST00000526025 GBX1Q14549 363 aa20.31■□□□□ 0.84
CD44-222ENST00000526025 OTOAQ7RTW8 1153 aa20.31■□□□□ 0.84
CD44-222ENST00000526025 STRA8Q7Z7C7 330 aa20.31■□□□□ 0.84
CD44-222ENST00000526025 PDZD3Q86UT5 571 aa20.31■□□□□ 0.84
CD44-222ENST00000526025 ZC3HC1Q86WB0 502 aaKnown RBP20.31■□□□□ 0.84
CD44-222ENST00000526025 SLC22A15Q8IZD6 547 aa20.31■□□□□ 0.84
CD44-222ENST00000526025 KRT222Q8N1A0 295 aa20.31■□□□□ 0.84
CD44-222ENST00000526025 LILRA3Q8N6C8 439 aaPredicted RBP20.31■□□□□ 0.84
CD44-222ENST00000526025 ZFPM2Q8WW38 1151 aa20.31■□□□□ 0.84
CD44-222ENST00000526025 SH3KBP1Q96B97 665 aa20.31■□□□□ 0.84
CD44-222ENST00000526025 CYTH2Q99418 400 aa20.31■□□□□ 0.84
CD44-222ENST00000526025 WWP1Q9H0M0 922 aa20.31■□□□□ 0.84
CD44-222ENST00000526025 RHOJQ9H4E5 214 aa20.31■□□□□ 0.84
CD44-222ENST00000526025 ACSS3Q9H6R3 686 aa20.31■□□□□ 0.84
CD44-222ENST00000526025 TOR4AQ9NXH8 423 aa20.31■□□□□ 0.84
CD44-222ENST00000526025 SCHIP1Q9P0W5 487 aaPredicted RBP20.31■□□□□ 0.84
CD44-222ENST00000526025 CPNE7Q9UBL6 633 aa20.31■□□□□ 0.84
CD44-222ENST00000526025 CDYLQ9Y232 598 aa20.31■□□□□ 0.84
CD44-222ENST00000526025 WDR37Q9Y2I8 494 aa20.31■□□□□ 0.84
CD44-222ENST00000526025 MED16Q9Y2X0 877 aa20.31■□□□□ 0.84
CD44-222ENST00000526025 HEBP2Q9Y5Z4 205 aa20.31■□□□□ 0.84
CD44-222ENST00000526025 PSAT1Q9Y617 370 aa20.31■□□□□ 0.84
CD44-222ENST00000526025 E5RI56 91 aa20.3■□□□□ 0.84
CD44-222ENST00000526025 ZW10O43264 779 aa20.3■□□□□ 0.84
CD44-222ENST00000526025 NIPSNAP2O75323 286 aa20.3■□□□□ 0.84
CD44-222ENST00000526025 VPS26AO75436 327 aa20.3■□□□□ 0.84
CD44-222ENST00000526025 MYBL2P10244 700 aa20.3■□□□□ 0.84
CD44-222ENST00000526025 CHRM3P20309 590 aa20.3■□□□□ 0.84
CD44-222ENST00000526025 GP5P40197 560 aa20.3■□□□□ 0.84
CD44-222ENST00000526025 GPR3P46089 330 aa20.3■□□□□ 0.84
CD44-222ENST00000526025 CLCN7P51798 805 aa20.3■□□□□ 0.84
CD44-222ENST00000526025 MAZP56270 477 aaKnown RBP20.3■□□□□ 0.84
CD44-222ENST00000526025 BOP1Q14137 746 aaKnown RBP20.3■□□□□ 0.84
CD44-222ENST00000526025 CLCA4Q14CN2 919 aa20.3■□□□□ 0.84
CD44-222ENST00000526025 SEPT7Q16181 437 aaKnown RBP20.3■□□□□ 0.84
CD44-222ENST00000526025 RPE65Q16518 533 aa20.3■□□□□ 0.84
CD44-222ENST00000526025 KBTBD12Q3ZCT8 623 aa20.3■□□□□ 0.84
CD44-222ENST00000526025 UGT3A1Q6NUS8 523 aa20.3■□□□□ 0.84
CD44-222ENST00000526025 GUSBP11Q6P575 273 aa20.3■□□□□ 0.84
CD44-222ENST00000526025 SFTPA2Q8IWL1 248 aa20.3■□□□□ 0.84
CD44-222ENST00000526025 PATE1Q8WXA2 126 aa20.3■□□□□ 0.84
CD44-222ENST00000526025 RMDN2Q96LZ7 410 aa20.3■□□□□ 0.84
CD44-222ENST00000526025 ZNF624Q9P2J8 865 aaPredicted RBP20.3■□□□□ 0.84
CD44-222ENST00000526025 SLC17A6Q9P2U8 582 aa20.3■□□□□ 0.84
CD44-222ENST00000526025 RABGEF1Q9UJ41 708 aa20.3■□□□□ 0.84
CD44-222ENST00000526025 APOBEC2Q9Y235 224 aaKnown RBP20.3■□□□□ 0.84
CD44-222ENST00000526025 UNC13CQ8NB66 2214 aa20.29■□□□□ 0.84
CD44-222ENST00000526025 CXorf49A8MYA2 514 aaPredicted RBP20.29■□□□□ 0.84
CD44-222ENST00000526025 EIF3FO00303 357 aaPredicted RBP20.29■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms