RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 RBMS1P29558 406 aaKnown RBP9.49□□□□□ -0.89
RNF4-221ENST00000513643 PDHA2P29803 388 aa9.49□□□□□ -0.89
RNF4-221ENST00000513643 TSPAN7P41732 249 aa9.49□□□□□ -0.89
RNF4-221ENST00000513643 LMAN1P49257 510 aa9.49□□□□□ -0.89
RNF4-221ENST00000513643 SESN2P58004 480 aaPredicted RBP9.49□□□□□ -0.89
RNF4-221ENST00000513643 GNG11P61952 73 aa9.49□□□□□ -0.89
RNF4-221ENST00000513643 CRADDP78560 199 aa9.49□□□□□ -0.89
RNF4-221ENST00000513643 TLE3Q04726 772 aa9.49□□□□□ -0.89
RNF4-221ENST00000513643 CCDC173Q0VFZ6 552 aa9.49□□□□□ -0.89
RNF4-221ENST00000513643 TRIP13Q15645 432 aaPredicted RBP9.49□□□□□ -0.89
RNF4-221ENST00000513643 SEPT7Q16181 437 aaKnown RBP9.49□□□□□ -0.89
RNF4-221ENST00000513643 MAP9Q49MG5 647 aa9.49□□□□□ -0.89
RNF4-221ENST00000513643 RNASEH2BQ5TBB1 312 aaKnown RBP9.49□□□□□ -0.89
RNF4-221ENST00000513643 TAS2R42Q7RTR8 314 aa9.49□□□□□ -0.89
RNF4-221ENST00000513643 CFAP206Q8IYR0 622 aa9.49□□□□□ -0.89
RNF4-221ENST00000513643 MPP5Q8N3R9 675 aa9.49□□□□□ -0.89
RNF4-221ENST00000513643 RCBTB1Q8NDN9 531 aa9.49□□□□□ -0.89
RNF4-221ENST00000513643 ZNF248Q8NDW4 579 aa9.49□□□□□ -0.89
RNF4-221ENST00000513643 SNRNP27Q8WVK2 155 aaKnown RBP9.49□□□□□ -0.89
RNF4-221ENST00000513643 MFSD3Q96ES6 412 aa9.49□□□□□ -0.89
RNF4-221ENST00000513643 SIGLEC10Q96LC7 697 aa9.49□□□□□ -0.89
RNF4-221ENST00000513643 C9orf72Q96LT7 481 aa9.49□□□□□ -0.89
RNF4-221ENST00000513643 WWP1Q9H0M0 922 aa9.49□□□□□ -0.89
RNF4-221ENST00000513643 P2RY12Q9H244 342 aa9.49□□□□□ -0.89
RNF4-221ENST00000513643 STN1Q9H668 368 aaKnown RBP9.49□□□□□ -0.89
RNF4-221ENST00000513643 KIR3DX1Q9H7L2 352 aa9.49□□□□□ -0.89
RNF4-221ENST00000513643 COG4Q9H9E3 785 aa9.49□□□□□ -0.89
RNF4-221ENST00000513643 SYBUQ9NX95 663 aa9.49□□□□□ -0.89
RNF4-221ENST00000513643 SIDT1Q9NXL6 827 aaKnown RBP9.49□□□□□ -0.89
RNF4-221ENST00000513643 MARCH4Q9P2E8 410 aaPredicted RBP9.49□□□□□ -0.89
RNF4-221ENST00000513643 CDYLQ9Y232 598 aa9.49□□□□□ -0.89
RNF4-221ENST00000513643 CFAP46Q8IYW2 2715 aa9.48□□□□□ -0.89
RNF4-221ENST00000513643 PIKFYVEQ9Y2I7 2098 aa9.48□□□□□ -0.89
RNF4-221ENST00000513643 ZCWPW2A0A1B0GU75 182 aa9.48□□□□□ -0.89
RNF4-221ENST00000513643 FAM237BA0A1B0GVD1 139 aa9.48□□□□□ -0.89
RNF4-221ENST00000513643 MAGEB16A2A368 324 aa9.48□□□□□ -0.89
RNF4-221ENST00000513643 BHMG1C9JSJ3 638 aaPredicted RBP9.48□□□□□ -0.89
RNF4-221ENST00000513643 QSOX1O00391 747 aa9.48□□□□□ -0.89
RNF4-221ENST00000513643 GPC4O75487 556 aa9.48□□□□□ -0.89
RNF4-221ENST00000513643 ITIH1P19827 911 aa9.48□□□□□ -0.89
RNF4-221ENST00000513643 RPS3P23396 243 aaKnown RBP eCLIP9.48□□□□□ -0.89
RNF4-221ENST00000513643 MPSTP25325 297 aa9.48□□□□□ -0.89
RNF4-221ENST00000513643 ITPKBP27987 946 aa9.48□□□□□ -0.89
RNF4-221ENST00000513643 SLC5A2P31639 672 aa9.48□□□□□ -0.89
RNF4-221ENST00000513643 HALP42357 657 aa9.48□□□□□ -0.89
RNF4-221ENST00000513643 CAPZBP47756 277 aa9.48□□□□□ -0.89
RNF4-221ENST00000513643 ADARP55265 1226 aaKnown RBP9.48□□□□□ -0.89
RNF4-221ENST00000513643 PCBP4P57723 403 aaKnown RBP9.48□□□□□ -0.89
RNF4-221ENST00000513643 MC2RQ01718 297 aa9.48□□□□□ -0.89
RNF4-221ENST00000513643 BIRC2Q13490 618 aa9.48□□□□□ -0.89
RNF4-221ENST00000513643 PTK6Q13882 451 aa9.48□□□□□ -0.89
RNF4-221ENST00000513643 TYSND1Q2T9J0 566 aa9.48□□□□□ -0.89
RNF4-221ENST00000513643 KIAA0930Q6ICG6 404 aaPredicted RBP9.48□□□□□ -0.89
RNF4-221ENST00000513643 PRSS42Q7Z5A4 293 aa9.48□□□□□ -0.89
RNF4-221ENST00000513643 PLXDC1Q8IUK5 500 aa9.48□□□□□ -0.89
RNF4-221ENST00000513643 SPACA3Q8IXA5 215 aa9.48□□□□□ -0.89
RNF4-221ENST00000513643 AGBL5Q8NDL9 886 aa9.48□□□□□ -0.89
RNF4-221ENST00000513643 PPHLN1Q8NEY8 458 aaKnown RBP9.48□□□□□ -0.89
RNF4-221ENST00000513643 GRK7Q8WTQ7 553 aa9.48□□□□□ -0.89
RNF4-221ENST00000513643 KLHL6Q8WZ60 621 aa9.48□□□□□ -0.89
RNF4-221ENST00000513643 NCSTNQ92542 709 aa9.48□□□□□ -0.89
RNF4-221ENST00000513643 CXorf40BQ96DE9 158 aa9.48□□□□□ -0.89
RNF4-221ENST00000513643 BIRC8Q96P09 236 aa9.48□□□□□ -0.89
RNF4-221ENST00000513643 FCRL3Q96P31 734 aaPredicted RBP9.48□□□□□ -0.89
RNF4-221ENST00000513643 SERPINB12Q96P63 405 aa9.48□□□□□ -0.89
RNF4-221ENST00000513643 NAPGQ99747 312 aaPredicted RBP9.48□□□□□ -0.89
RNF4-221ENST00000513643 CARD6Q9BX69 1037 aa9.48□□□□□ -0.89
RNF4-221ENST00000513643 DPH1Q9BZG8 443 aa9.48□□□□□ -0.89
RNF4-221ENST00000513643 TFB2MQ9H5Q4 396 aaKnown RBP9.48□□□□□ -0.89
RNF4-221ENST00000513643 PRORYQ9H606 182 aa9.48□□□□□ -0.89
RNF4-221ENST00000513643 SYNDIG1Q9H7V2 258 aa9.48□□□□□ -0.89
RNF4-221ENST00000513643 XAB2Q9HCS7 855 aaKnown RBP9.48□□□□□ -0.89
RNF4-221ENST00000513643 FBXO8Q9NRD0 319 aa9.48□□□□□ -0.89
RNF4-221ENST00000513643 OCIAD1Q9NX40 245 aa9.48□□□□□ -0.89
RNF4-221ENST00000513643 RNF14Q9UBS8 474 aa9.48□□□□□ -0.89
RNF4-221ENST00000513643 SLC24A2Q9UI40 661 aa9.48□□□□□ -0.89
RNF4-221ENST00000513643 PSMD13Q9UNM6 376 aa9.48□□□□□ -0.89
RNF4-221ENST00000513643 SAR1BQ9Y6B6 198 aa9.48□□□□□ -0.89
RNF4-221ENST00000513643 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9.48□□□□□ -0.89
RNF4-221ENST00000513643 SDR42E2A6NKP2 422 aa9.47□□□□□ -0.89
RNF4-221ENST00000513643 LIN7AO14910 233 aaPredicted RBP9.47□□□□□ -0.89
RNF4-221ENST00000513643 CD3EAPO15446 510 aaKnown RBP9.47□□□□□ -0.89
RNF4-221ENST00000513643 CAPN5O15484 640 aaPredicted RBP9.47□□□□□ -0.89
RNF4-221ENST00000513643 EFSO43281 561 aa9.47□□□□□ -0.89
RNF4-221ENST00000513643 PRAMEF10O60809 474 aa9.47□□□□□ -0.89
RNF4-221ENST00000513643 POLBP06746 335 aa9.47□□□□□ -0.89
RNF4-221ENST00000513643 TPBGLP0DKB5 382 aa9.47□□□□□ -0.89
RNF4-221ENST00000513643 NDUFS1P28331 727 aa9.47□□□□□ -0.89
RNF4-221ENST00000513643 CCR7P32248 378 aa9.47□□□□□ -0.89
RNF4-221ENST00000513643 LEPRP48357 1165 aaKnown RBP9.47□□□□□ -0.89
RNF4-221ENST00000513643 VPS41P49754 854 aa9.47□□□□□ -0.89
RNF4-221ENST00000513643 GFERP55789 205 aa9.47□□□□□ -0.89
RNF4-221ENST00000513643 SARNPP82979 210 aaKnown RBP9.47□□□□□ -0.89
RNF4-221ENST00000513643 PLOD1Q02809 727 aaPredicted RBP9.47□□□□□ -0.89
RNF4-221ENST00000513643 CLN3Q13286 438 aa9.47□□□□□ -0.89
RNF4-221ENST00000513643 BOP1Q14137 746 aaKnown RBP9.47□□□□□ -0.89
RNF4-221ENST00000513643 ANKRD20A4Q4UJ75 823 aa9.47□□□□□ -0.89
RNF4-221ENST00000513643 PHF19Q5T6S3 580 aa9.47□□□□□ -0.89
RNF4-221ENST00000513643 PDZD3Q86UT5 571 aa9.47□□□□□ -0.89
RNF4-221ENST00000513643 TRIM48Q8IWZ4 208 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms