RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 PARNO95453 639 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 LPOP22079 712 aaPredicted RBP9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 CD47Q08722 323 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 FAM174BQ3ZCQ3 159 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 CTXN3Q4LDR2 81 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 CTSL3PQ5NE16 218 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 PERM1Q5SV97 790 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 SPRYD7Q5W111 196 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 RBM23Q86U06 439 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 LEMD2Q8NC56 503 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 YTHDF1Q9BYJ9 559 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 CRISPLD1Q9H336 500 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 NSUN3Q9H649 340 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 FARSBQ9NSD9 589 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 FAM118AQ9NWS6 357 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 UBA2Q9UBT2 640 aaPredicted RBP9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 SEPT3Q9UH03 358 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 SCN4AP35499 1836 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 F5H5T6 163 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 ABCB7O75027 752 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 GSNP06396 782 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 FSHRP23945 695 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 ALDH4A1P30038 563 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 GRSF1Q12849 480 aaKnown RBP eCLIP9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 VARS2Q5ST30 1063 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 C6orf141Q5SZD1 244 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 TXNDC11Q6PKC3 985 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 CRTC3Q6UUV7 619 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 GCNT7Q6ZNI0 430 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 PAF1Q8N7H5 531 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 TRPV1Q8NER1 839 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 MTFMTQ96DP5 389 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 NACA2Q9H009 215 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 IPPKQ9H8X2 491 aa9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 TRNAU1APQ9NX07 287 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-215ENST00000512632 ARVCFO00192 962 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 INSIG1O15503 277 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 SEC14L2O76054 403 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 CPNE6O95741 557 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 SLC6A4P31645 630 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 SPCS2Q15005 226 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 CTU2Q2VPK5 515 aaKnown RBP9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 GLB1LQ6UWU2 654 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 PEX13Q92968 403 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 FAM162AQ96A26 154 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 PPP1R14BQ96C90 147 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 FUNDC2Q9BWH2 189 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 APOL5Q9BWW9 433 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 RAD21L1Q9H4I0 556 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 ACTR8Q9H981 624 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 TMEM9Q9P0T7 183 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 PDE10AQ9Y233 779 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 INVSQ9Y283 1065 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 SLC30A1Q9Y6M5 507 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 ZFP37Q9Y6Q3 630 aaPredicted RBP9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 NUP214P35658 2090 aaPredicted RBP9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 CFAP99D6REC4 459 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 XPNPEP2O43895 674 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 PRAMEF12O95522 483 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 AKR1A1P14550 325 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 TMBIM6P55061 237 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 AQP6Q13520 282 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 CRY1Q16526 586 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 MAPKAPK3Q16644 382 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 SPANXN4Q5MJ08 99 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 FAM171A1Q5VUB5 890 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 TTC23Q5W5X9 447 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 GOLGA7Q7Z5G4 137 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 CLDN19Q8N6F1 224 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 SCUBE2Q9NQ36 999 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 RAI2Q9Y5P3 530 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 ST14Q9Y5Y6 855 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 TBC1D4O60343 1298 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 BCAS1O75363 584 aaPredicted RBP9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 INMTO95050 263 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 GGT1P19440 569 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 FUT4P22083 530 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 OPRL1P41146 370 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 MAGEA10P43363 369 aaPredicted RBP9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 OXCT1P55809 520 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 CD300CQ08708 224 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 PWP1Q13610 501 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 TAF1CQ15572 869 aaPredicted RBP9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 TAF1AQ15573 450 aaPredicted RBP9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 C16orf59Q7L2K0 433 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 KRTCAP2Q8N6L1 136 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 TMCO5AQ8N6Q1 288 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 TERB1Q8NA31 727 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 CHDHQ8NE62 594 aaPredicted RBP9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 ZNF555Q8NEP9 628 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 FATE1Q969F0 183 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 C8orf48Q96LL4 319 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 ZNF382Q96SR6 550 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 EGFL8Q99944 293 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 PDFQ9HBH1 243 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 TLR8Q9NR97 1041 aaKnown RBP9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 SMPD4Q9NXE4 827 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 LSM1O15116 133 aaKnown RBP9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 AXIN1O15169 862 aa9.11□□□□□ -0.95
LIMCH1-215ENST00000512632 CLPXO76031 633 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms