RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 TSR3Q9UJK0 312 aaKnown RBP3.54□□□□□ -1.84
USP53-205ENST00000509769 YTHDF2Q9Y5A9 579 aaKnown RBP3.54□□□□□ -1.84
USP53-205ENST00000509769 OAS3Q9Y6K5 1087 aaKnown RBP3.54□□□□□ -1.84
USP53-205ENST00000509769 BTAF1O14981 1849 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP3.54□□□□□ -1.84
USP53-205ENST00000509769 FUOMA2VDF0 154 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 A8MVJ9 347 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 ZNF705FA8MVS1 300 aaPredicted RBP3.54□□□□□ -1.84
USP53-205ENST00000509769 K7ERU9 68 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 QSOX1O00391 747 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 NEMP1O14524 444 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 NPC1O15118 1278 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 SELENOFO60613 162 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 ERN1O75460 977 aaKnown RBP3.54□□□□□ -1.84
USP53-205ENST00000509769 MICAL2O94851 1124 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 CCNB2O95067 398 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 NR3C1P04150 777 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 ZNF705DP0CH99 300 aaPredicted RBP3.54□□□□□ -1.84
USP53-205ENST00000509769 ZNF705BP0CI00 300 aaPredicted RBP3.54□□□□□ -1.84
USP53-205ENST00000509769 FDX1P10109 184 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 SLC2A3P11169 496 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 PTPN2P17706 415 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 GSTM3P21266 225 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 UBA1P22314 1058 aaKnown RBP3.54□□□□□ -1.84
USP53-205ENST00000509769 RPS3P23396 243 aaKnown RBP eCLIP3.54□□□□□ -1.84
USP53-205ENST00000509769 DNASE1P24855 282 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 ADD1P35611 737 aaKnown RBP3.54□□□□□ -1.84
USP53-205ENST00000509769 IGFALSP35858 605 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 TAGLN2P37802 199 aaKnown RBP3.54□□□□□ -1.84
USP53-205ENST00000509769 NNMTP40261 264 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 CTSKP43235 329 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 GABRB2P47870 512 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 SOX9P48436 509 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 VAMP7P51809 220 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 ART1P52961 327 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 IL2P60568 153 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 PFKPQ01813 784 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 ALDH6A1Q02252 535 aaKnown RBP3.54□□□□□ -1.84
USP53-205ENST00000509769 RPL6Q02878 288 aaKnown RBP3.54□□□□□ -1.84
USP53-205ENST00000509769 RPA4Q13156 261 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 ZNF177Q13360 481 aaPredicted RBP3.54□□□□□ -1.84
USP53-205ENST00000509769 PON2Q15165 354 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 RAB35Q15286 201 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 SNAPC1Q16533 368 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 FBXO48Q5FWF7 155 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 EXOSC6Q5RKV6 272 aaKnown RBP3.54□□□□□ -1.84
USP53-205ENST00000509769 LDLRAP1Q5SW96 308 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 METAP1DQ6UB28 335 aaPredicted RBP3.54□□□□□ -1.84
USP53-205ENST00000509769 S100A7AQ86SG5 101 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 SLC51AQ86UW1 340 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 SLC22A16Q86VW1 577 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 SLC9A9Q8IVB4 645 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 IFNL2Q8IZJ0 200 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 THEM5Q8N1Q8 247 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 ZNF781Q8N8C0 355 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 NELL1Q92832 810 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 SLC38A4Q969I6 547 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 OTUB2Q96DC9 234 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 COL21A1Q96P44 957 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 ZNF607Q96SK3 696 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 ACTRT3Q9BYD9 372 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 OR11A1Q9GZK7 315 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 ADAMTS10Q9H324 1103 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 GPN2Q9H9Y4 310 aaPredicted RBP3.54□□□□□ -1.84
USP53-205ENST00000509769 SCPEP1Q9HB40 452 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 TRPV4Q9HBA0 871 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 WASH6PQ9NQA3 447 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 KMT5AQ9NQR1 393 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 TEX10Q9NXF1 929 aaPredicted RBP3.54□□□□□ -1.84
USP53-205ENST00000509769 PKP3Q9Y446 797 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 CRYBG1Q9Y4K1 1723 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 A0A0A0MRY4 1105 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 A0A1B0GV72 72 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 ACOD1A6NK06 481 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 A8MX80 341 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 LRRN3E7EW58 273 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 DCLK1O15075 740 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 TBX3O15119 743 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 HDAC3O15379 428 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 ITM2AO43736 263 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 SCN2BO60939 215 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 CELF2O95319 508 aaKnown RBP3.53□□□□□ -1.84
USP53-205ENST00000509769 OXSR1O95747 527 aaPredicted RBP3.53□□□□□ -1.84
USP53-205ENST00000509769 ZNF682O95780 498 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 HBE1P02100 147 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 C9P02748 559 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 HLA-DPB1P04440 258 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 MMP7P09237 267 aaPredicted RBP3.53□□□□□ -1.84
USP53-205ENST00000509769 PLA2G4BP0C869 781 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 BMP1P13497 986 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 BMP7P18075 431 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 ITGA3P26006 1051 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 STT3AP46977 705 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 CPA2P48052 419 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 LUMP51884 338 aaPredicted RBP3.53□□□□□ -1.84
USP53-205ENST00000509769 UBXN2AP68543 259 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 TLE4Q04727 773 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 ZNF33BQ06732 778 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 AUHQ13825 339 aaKnown RBP3.53□□□□□ -1.84
USP53-205ENST00000509769 SCARB2Q14108 478 aa3.53□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms