RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 ACDQ96AP0 544 aa12.98□□□□□ -0.33
PTPRF-215ENST00000496447 HAPLN3Q96S86 360 aa12.98□□□□□ -0.33
PTPRF-215ENST00000496447 TCF12Q99081 682 aa12.98□□□□□ -0.33
PTPRF-215ENST00000496447 TDRD1Q9BXT4 1180 aaKnown RBP12.98□□□□□ -0.33
PTPRF-215ENST00000496447 TLR9Q9NR96 1032 aa12.98□□□□□ -0.33
PTPRF-215ENST00000496447 CCDC182A6NF36 153 aa12.98□□□□□ -0.33
PTPRF-215ENST00000496447 IL12BP29460 328 aa12.98□□□□□ -0.33
PTPRF-215ENST00000496447 RFC2P35250 354 aa12.98□□□□□ -0.33
PTPRF-215ENST00000496447 DPYSQ14117 519 aa12.98□□□□□ -0.33
PTPRF-215ENST00000496447 VPS26BQ4G0F5 336 aa12.98□□□□□ -0.33
PTPRF-215ENST00000496447 DCBLD1Q8N8Z6 715 aa12.98□□□□□ -0.33
PTPRF-215ENST00000496447 RASSF5Q8WWW0 418 aa12.98□□□□□ -0.33
PTPRF-215ENST00000496447 NTPCRQ9BSD7 190 aaKnown RBP12.98□□□□□ -0.33
PTPRF-215ENST00000496447 S100A14Q9HCY8 104 aa12.98□□□□□ -0.33
PTPRF-215ENST00000496447 ACSS2Q9NR19 701 aa12.98□□□□□ -0.33
PTPRF-215ENST00000496447 GKN1Q9NS71 199 aa12.98□□□□□ -0.33
PTPRF-215ENST00000496447 RICTORQ6R327 1708 aa12.98□□□□□ -0.33
PTPRF-215ENST00000496447 UBR1Q8IWV7 1749 aa12.98□□□□□ -0.33
PTPRF-215ENST00000496447 B3GALT2O43825 422 aa12.98□□□□□ -0.33
PTPRF-215ENST00000496447 EDF1O60869 148 aaKnown RBP12.98□□□□□ -0.33
PTPRF-215ENST00000496447 PBX1P40424 430 aa12.98□□□□□ -0.33
PTPRF-215ENST00000496447 CCNFP41002 786 aa12.98□□□□□ -0.33
PTPRF-215ENST00000496447 SLC13A2Q13183 592 aa12.98□□□□□ -0.33
PTPRF-215ENST00000496447 COL9A3Q14050 684 aaPredicted RBP12.98□□□□□ -0.33
PTPRF-215ENST00000496447 GRB14Q14449 540 aa12.98□□□□□ -0.33
PTPRF-215ENST00000496447 RFX4Q33E94 735 aa12.98□□□□□ -0.33
PTPRF-215ENST00000496447 ARSIQ5FYB1 569 aa12.98□□□□□ -0.33
PTPRF-215ENST00000496447 PPM1JQ5JR12 505 aa12.98□□□□□ -0.33
PTPRF-215ENST00000496447 FAM91A1Q658Y4 838 aa12.98□□□□□ -0.33
PTPRF-215ENST00000496447 ZYG11AQ6WRX3 759 aa12.98□□□□□ -0.33
PTPRF-215ENST00000496447 PMEPA1Q969W9 287 aa12.98□□□□□ -0.33
PTPRF-215ENST00000496447 SIPA1Q96FS4 1042 aa12.98□□□□□ -0.33
PTPRF-215ENST00000496447 RAB11FIP5Q9BXF6 653 aa12.98□□□□□ -0.33
PTPRF-215ENST00000496447 UNC93B1Q9H1C4 597 aa12.98□□□□□ -0.33
PTPRF-215ENST00000496447 PRPF19Q9UMS4 504 aaKnown RBP12.98□□□□□ -0.33
PTPRF-215ENST00000496447 A0A1W2PQ45 241 aaPredicted RBP12.98□□□□□ -0.33
PTPRF-215ENST00000496447 A0A1W2PQY0 241 aa12.98□□□□□ -0.33
PTPRF-215ENST00000496447 WNT9AO14904 365 aa12.98□□□□□ -0.33
PTPRF-215ENST00000496447 MAGEB3O15480 346 aa12.98□□□□□ -0.33
PTPRF-215ENST00000496447 ATXN1P54253 815 aaKnown RBP12.98□□□□□ -0.33
PTPRF-215ENST00000496447 POU5F1Q01860 360 aaKnown RBP12.98□□□□□ -0.33
PTPRF-215ENST00000496447 LCP2Q13094 533 aa12.98□□□□□ -0.33
PTPRF-215ENST00000496447 IL23RQ5VWK5 629 aa12.98□□□□□ -0.33
PTPRF-215ENST00000496447 KRT74Q7RTS7 529 aa12.98□□□□□ -0.33
PTPRF-215ENST00000496447 AMIGO2Q86SJ2 522 aa12.98□□□□□ -0.33
PTPRF-215ENST00000496447 MMAAQ8IVH4 418 aaKnown RBP12.98□□□□□ -0.33
PTPRF-215ENST00000496447 PIH1D2Q8WWB5 315 aa12.98□□□□□ -0.33
PTPRF-215ENST00000496447 TAPBPLQ9BX59 468 aa12.98□□□□□ -0.33
PTPRF-215ENST00000496447 EPB41L1Q9H4G0 881 aa12.98□□□□□ -0.33
PTPRF-215ENST00000496447 CARS2Q9HA77 564 aaKnown RBP12.98□□□□□ -0.33
PTPRF-215ENST00000496447 MRPS30Q9NP92 439 aaKnown RBP12.98□□□□□ -0.33
PTPRF-215ENST00000496447 SEMA3DO95025 777 aa12.97□□□□□ -0.33
PTPRF-215ENST00000496447 CYP4B1P13584 511 aa12.97□□□□□ -0.33
PTPRF-215ENST00000496447 GJA1P17302 382 aa12.97□□□□□ -0.33
PTPRF-215ENST00000496447 SEMG2Q02383 582 aa12.97□□□□□ -0.33
PTPRF-215ENST00000496447 INAVAQ3KP66 663 aa12.97□□□□□ -0.33
PTPRF-215ENST00000496447 ADGRF1Q5T601 910 aa12.97□□□□□ -0.33
PTPRF-215ENST00000496447 TMEM192Q8IY95 271 aa12.97□□□□□ -0.33
PTPRF-215ENST00000496447 CPNE9Q8IYJ1 553 aa12.97□□□□□ -0.33
PTPRF-215ENST00000496447 ZMIZ2Q8NF64 920 aa12.97□□□□□ -0.33
PTPRF-215ENST00000496447 PRICKLE1Q96MT3 831 aaPredicted RBP12.97□□□□□ -0.33
PTPRF-215ENST00000496447 GMEB2Q9UKD1 530 aa12.97□□□□□ -0.33
PTPRF-215ENST00000496447 ERVK-11Q9UQG0 969 aa12.97□□□□□ -0.33
PTPRF-215ENST00000496447 WBP11Q9Y2W2 641 aaKnown RBP12.97□□□□□ -0.33
PTPRF-215ENST00000496447 PHLPP1O60346 1717 aa12.97□□□□□ -0.33
PTPRF-215ENST00000496447 TCRBV7S2A1N4TA0A589 114 aa12.97□□□□□ -0.33
PTPRF-215ENST00000496447 UBXN7O94888 489 aa12.97□□□□□ -0.33
PTPRF-215ENST00000496447 OMPP47874 163 aa12.97□□□□□ -0.33
PTPRF-215ENST00000496447 NRIP1P48552 1158 aa12.97□□□□□ -0.33
PTPRF-215ENST00000496447 ACADVLP49748 655 aa12.97□□□□□ -0.33
PTPRF-215ENST00000496447 RGS8P57771 180 aaPredicted RBP12.97□□□□□ -0.33
PTPRF-215ENST00000496447 TYSND1Q2T9J0 566 aa12.97□□□□□ -0.33
PTPRF-215ENST00000496447 ZFP69Q49AA0 526 aa12.97□□□□□ -0.33
PTPRF-215ENST00000496447 MINDY2Q8NBR6 621 aa12.97□□□□□ -0.33
PTPRF-215ENST00000496447 PPM1MQ96MI6 270 aa12.97□□□□□ -0.33
PTPRF-215ENST00000496447 RBMX2Q9Y388 322 aaKnown RBP12.97□□□□□ -0.33
PTPRF-215ENST00000496447 OR5F1O95221 314 aa12.97□□□□□ -0.33
PTPRF-215ENST00000496447 UROSP10746 265 aa12.97□□□□□ -0.33
PTPRF-215ENST00000496447 HOXB6P17509 224 aaKnown RBP12.97□□□□□ -0.33
PTPRF-215ENST00000496447 OGNP20774 298 aaKnown RBP12.97□□□□□ -0.33
PTPRF-215ENST00000496447 HOXC12P31275 282 aa12.97□□□□□ -0.33
PTPRF-215ENST00000496447 TRAP1Q12931 704 aaKnown RBP12.97□□□□□ -0.33
PTPRF-215ENST00000496447 RTKNQ9BST9 563 aa12.97□□□□□ -0.33
PTPRF-215ENST00000496447 SUV39H2Q9H5I1 410 aa12.97□□□□□ -0.33
PTPRF-215ENST00000496447 PCP4L1A6NKN8 68 aa12.97□□□□□ -0.33
PTPRF-215ENST00000496447 RNF225M0QZC1 329 aaPredicted RBP12.97□□□□□ -0.33
PTPRF-215ENST00000496447 VNN1O95497 513 aa12.97□□□□□ -0.33
PTPRF-215ENST00000496447 AKR1D1P51857 326 aa12.97□□□□□ -0.33
PTPRF-215ENST00000496447 HSPB3Q12988 150 aa12.97□□□□□ -0.33
PTPRF-215ENST00000496447 PTGES3Q15185 160 aaKnown RBP12.97□□□□□ -0.33
PTPRF-215ENST00000496447 TXNDC8Q6A555 127 aa12.97□□□□□ -0.33
PTPRF-215ENST00000496447 GDPD4Q6W3E5 623 aa12.97□□□□□ -0.33
PTPRF-215ENST00000496447 PIK3C3Q8NEB9 887 aa12.97□□□□□ -0.33
PTPRF-215ENST00000496447 ZNF514Q96K75 400 aaPredicted RBP12.97□□□□□ -0.33
PTPRF-215ENST00000496447 DNAJC28Q9NX36 388 aa12.97□□□□□ -0.33
PTPRF-215ENST00000496447 ZNF536O15090 1300 aa12.97□□□□□ -0.33
PTPRF-215ENST00000496447 SLIT2O94813 1529 aa12.97□□□□□ -0.33
PTPRF-215ENST00000496447 CPED1A4D0V7 1026 aa12.96□□□□□ -0.33
PTPRF-215ENST00000496447 AGPSO00116 658 aa12.96□□□□□ -0.33
PTPRF-215ENST00000496447 KLHL18O94889 574 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms