RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 GJA1P17302 382 aa16.1■□□□□ 0.17
CCDC88B-209ENST00000494080 LRRC73Q5JTD7 316 aa16.1■□□□□ 0.17
CCDC88B-209ENST00000494080 C14orf80Q86SX3 495 aa16.1■□□□□ 0.17
CCDC88B-209ENST00000494080 TMEM132CQ8N3T6 1108 aa16.1■□□□□ 0.17
CCDC88B-209ENST00000494080 SLC47A1Q96FL8 570 aa16.1■□□□□ 0.17
CCDC88B-209ENST00000494080 TMEM9Q9P0T7 183 aa16.1■□□□□ 0.17
CCDC88B-209ENST00000494080 CRNNQ9UBG3 495 aaPredicted RBP16.1■□□□□ 0.17
CCDC88B-209ENST00000494080 IKZF3Q9UKT9 509 aa16.1■□□□□ 0.17
CCDC88B-209ENST00000494080 SPATA2Q9UM82 520 aa16.1■□□□□ 0.17
CCDC88B-209ENST00000494080 SAGE2PA6NJ88 616 aa16.1■□□□□ 0.17
CCDC88B-209ENST00000494080 RGS10O43665 173 aa16.1■□□□□ 0.17
CCDC88B-209ENST00000494080 PDE9AO76083 593 aa16.1■□□□□ 0.17
CCDC88B-209ENST00000494080 GPR1P46091 355 aa16.1■□□□□ 0.17
CCDC88B-209ENST00000494080 SLC11A1P49279 550 aa16.1■□□□□ 0.17
CCDC88B-209ENST00000494080 SLC22A16Q86VW1 577 aa16.1■□□□□ 0.17
CCDC88B-209ENST00000494080 GPR156Q8NFN8 814 aa16.1■□□□□ 0.17
CCDC88B-209ENST00000494080 OXCT2Q9BYC2 517 aaPredicted RBP16.1■□□□□ 0.17
CCDC88B-209ENST00000494080 SOX17Q9H6I2 414 aaPredicted RBP16.1■□□□□ 0.17
CCDC88B-209ENST00000494080 PIPSLA2A3N6 862 aa16.09■□□□□ 0.17
CCDC88B-209ENST00000494080 SLC5A2P31639 672 aa16.09■□□□□ 0.17
CCDC88B-209ENST00000494080 CLCN2P51788 898 aa16.09■□□□□ 0.17
CCDC88B-209ENST00000494080 MYBPC1Q00872 1141 aa16.09■□□□□ 0.17
CCDC88B-209ENST00000494080 ACAP2Q15057 778 aa16.09■□□□□ 0.17
CCDC88B-209ENST00000494080 MPPE1Q53F39 396 aa16.09■□□□□ 0.17
CCDC88B-209ENST00000494080 TXNDC11Q6PKC3 985 aa16.09■□□□□ 0.17
CCDC88B-209ENST00000494080 AHSA2Q719I0 299 aa16.09■□□□□ 0.17
CCDC88B-209ENST00000494080 DSG4Q86SJ6 1040 aa16.09■□□□□ 0.17
CCDC88B-209ENST00000494080 ZNF420Q8TAQ5 688 aaPredicted RBP16.09■□□□□ 0.17
CCDC88B-209ENST00000494080 PPP3R2Q96LZ3 170 aa16.09■□□□□ 0.17
CCDC88B-209ENST00000494080 HDHD2Q9H0R4 259 aa16.09■□□□□ 0.17
CCDC88B-209ENST00000494080 N4BP2Q86UW6 1770 aaPredicted RBP16.09■□□□□ 0.17
CCDC88B-209ENST00000494080 TNRC6CQ9HCJ0 1690 aaKnown RBP16.09■□□□□ 0.17
CCDC88B-209ENST00000494080 HOXD12P35452 270 aa16.09■□□□□ 0.17
CCDC88B-209ENST00000494080 INTS11Q5TA45 600 aaKnown RBP16.09■□□□□ 0.17
CCDC88B-209ENST00000494080 FOXB2Q5VYV0 432 aa16.09■□□□□ 0.17
CCDC88B-209ENST00000494080 DNAJB7Q7Z6W7 309 aaPredicted RBP16.09■□□□□ 0.17
CCDC88B-209ENST00000494080 OR10T2Q8NGX3 314 aa16.09■□□□□ 0.17
CCDC88B-209ENST00000494080 ACAT2Q9BWD1 397 aa16.09■□□□□ 0.17
CCDC88B-209ENST00000494080 TMCC3Q9ULS5 477 aa16.09■□□□□ 0.17
CCDC88B-209ENST00000494080 SNX6Q9UNH7 406 aa16.09■□□□□ 0.17
CCDC88B-209ENST00000494080 STRCQ7RTU9 1775 aa16.09■□□□□ 0.17
CCDC88B-209ENST00000494080 NPHS1O60500 1241 aa16.09■□□□□ 0.17
CCDC88B-209ENST00000494080 PPP1R8Q12972 351 aaKnown RBP16.09■□□□□ 0.17
CCDC88B-209ENST00000494080 ZNF557Q8N988 423 aaPredicted RBP16.09■□□□□ 0.17
CCDC88B-209ENST00000494080 RBM4BQ9BQ04 359 aaKnown RBP16.09■□□□□ 0.17
CCDC88B-209ENST00000494080 RBM4Q9BWF3 364 aaKnown RBP16.09■□□□□ 0.17
CCDC88B-209ENST00000494080 CD84Q9UIB8 345 aa16.09■□□□□ 0.17
CCDC88B-209ENST00000494080 KCTD3Q9Y597 815 aa16.09■□□□□ 0.17
CCDC88B-209ENST00000494080 DLX3O60479 287 aa16.09■□□□□ 0.17
CCDC88B-209ENST00000494080 HNF4AP41235 474 aa16.09■□□□□ 0.17
CCDC88B-209ENST00000494080 HSPA7P48741 367 aa16.09■□□□□ 0.17
CCDC88B-209ENST00000494080 PHC1P78364 1004 aa16.09■□□□□ 0.17
CCDC88B-209ENST00000494080 GK3PQ14409 553 aa16.09■□□□□ 0.17
CCDC88B-209ENST00000494080 TXNDC8Q6A555 127 aa16.09■□□□□ 0.17
CCDC88B-209ENST00000494080 TSSK3Q96PN8 268 aa16.09■□□□□ 0.17
CCDC88B-209ENST00000494080 TPK1Q9H3S4 243 aa16.09■□□□□ 0.17
CCDC88B-209ENST00000494080 ANKRD12Q6UB98 2062 aa16.08■□□□□ 0.17
CCDC88B-209ENST00000494080 ZBTB42B2RXF5 422 aa16.08■□□□□ 0.17
CCDC88B-209ENST00000494080 COQ9O75208 318 aa16.08■□□□□ 0.17
CCDC88B-209ENST00000494080 SNNO75324 88 aaPredicted RBP16.08■□□□□ 0.17
CCDC88B-209ENST00000494080 CHRNA1P02708 482 aa16.08■□□□□ 0.17
CCDC88B-209ENST00000494080 ITPKAP23677 461 aa16.08■□□□□ 0.17
CCDC88B-209ENST00000494080 RRM2P31350 389 aa16.08■□□□□ 0.17
CCDC88B-209ENST00000494080 AP5B1Q2VPB7 878 aa16.08■□□□□ 0.17
CCDC88B-209ENST00000494080 ZC3HC1Q86WB0 502 aaKnown RBP16.08■□□□□ 0.17
CCDC88B-209ENST00000494080 TRPV3Q8NET8 790 aa16.08■□□□□ 0.17
CCDC88B-209ENST00000494080 ING5Q8WYH8 240 aa16.08■□□□□ 0.17
CCDC88B-209ENST00000494080 MTPAPQ9NVV4 582 aaKnown RBP eCLIP16.08■□□□□ 0.17
CCDC88B-209ENST00000494080 POLR3HQ9Y535 204 aaPredicted RBP16.08■□□□□ 0.17
CCDC88B-209ENST00000494080 PCP4L1A6NKN8 68 aa16.08■□□□□ 0.16
CCDC88B-209ENST00000494080 NOTOA8MTQ0 251 aa16.08■□□□□ 0.16
CCDC88B-209ENST00000494080 C8AP07357 584 aa16.08■□□□□ 0.16
CCDC88B-209ENST00000494080 AZGP1P25311 298 aaKnown RBP16.08■□□□□ 0.16
CCDC88B-209ENST00000494080 POLR2JP52435 117 aaKnown RBP16.08■□□□□ 0.16
CCDC88B-209ENST00000494080 PGGT1BP53609 377 aa16.08■□□□□ 0.16
CCDC88B-209ENST00000494080 CLCQ05315 142 aa16.08■□□□□ 0.16
CCDC88B-209ENST00000494080 TP53BP2Q13625 1128 aa16.08■□□□□ 0.16
CCDC88B-209ENST00000494080 RBM20Q5T481 1227 aaKnown RBP16.08■□□□□ 0.16
CCDC88B-209ENST00000494080 MYDGFQ969H8 173 aa16.08■□□□□ 0.16
CCDC88B-209ENST00000494080 MYOCQ99972 504 aa16.08■□□□□ 0.16
CCDC88B-209ENST00000494080 SYNDIG1Q9H7V2 258 aa16.08■□□□□ 0.16
CCDC88B-209ENST00000494080 HEMK1Q9Y5R4 338 aaPredicted RBP16.08■□□□□ 0.16
CCDC88B-209ENST00000494080 ZNF99A8MXY4 864 aaPredicted RBP16.08■□□□□ 0.16
CCDC88B-209ENST00000494080 AREL1O15033 823 aa16.08■□□□□ 0.16
CCDC88B-209ENST00000494080 ARPC2O15144 300 aa16.08■□□□□ 0.16
CCDC88B-209ENST00000494080 CYP7B1O75881 506 aa16.08■□□□□ 0.16
CCDC88B-209ENST00000494080 PGLSO95336 258 aa16.08■□□□□ 0.16
CCDC88B-209ENST00000494080 SIX3O95343 332 aaPredicted RBP16.08■□□□□ 0.16
CCDC88B-209ENST00000494080 ALFQ53S48 1182 aa16.08■□□□□ 0.16
CCDC88B-209ENST00000494080 XKR6Q5GH73 641 aa16.08■□□□□ 0.16
CCDC88B-209ENST00000494080 ARMC6Q6NXE6 501 aa16.08■□□□□ 0.16
CCDC88B-209ENST00000494080 MSANTD2Q6P1R3 559 aa16.08■□□□□ 0.16
CCDC88B-209ENST00000494080 ARFGAP1Q8N6T3 406 aa16.08■□□□□ 0.16
CCDC88B-209ENST00000494080 TOP1MTQ969P6 601 aa16.08■□□□□ 0.16
CCDC88B-209ENST00000494080 SLC7A5P2Q9GIP4 190 aa16.08■□□□□ 0.16
CCDC88B-209ENST00000494080 MYH9P35579 1960 aaKnown RBP16.08■□□□□ 0.16
CCDC88B-209ENST00000494080 KRT87PA6NCN2 255 aa16.07■□□□□ 0.16
CCDC88B-209ENST00000494080 PIP5K1BO14986 540 aa16.07■□□□□ 0.16
CCDC88B-209ENST00000494080 AIREO43918 545 aa16.07■□□□□ 0.16
CCDC88B-209ENST00000494080 ELFN1P0C7U0 828 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms