RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 SERPINB9P50453 376 aa16.77■□□□□ 0.28
VIM-205ENST00000485947 PCBP4P57723 403 aaKnown RBP16.77■□□□□ 0.28
VIM-205ENST00000485947 ILF2Q12905 390 aaKnown RBP16.77■□□□□ 0.28
VIM-205ENST00000485947 THOC5Q13769 683 aaKnown RBP16.77■□□□□ 0.28
VIM-205ENST00000485947 EFTUD2Q15029 972 aaKnown RBP eCLIP16.77■□□□□ 0.284e-6■■■□□ 19.1
VIM-205ENST00000485947 PYCR3Q53H96 274 aa16.77■□□□□ 0.28
VIM-205ENST00000485947 ZDHHC20Q5W0Z9 365 aa16.77■□□□□ 0.28
VIM-205ENST00000485947 C19orf48Q6RUI8 117 aa16.77■□□□□ 0.28
VIM-205ENST00000485947 TAOK1Q7L7X3 1001 aa16.77■□□□□ 0.28
VIM-205ENST00000485947 LYSMD3Q7Z3D4 306 aa16.77■□□□□ 0.28
VIM-205ENST00000485947 ZNF438Q7Z4V0 828 aa16.77■□□□□ 0.28
VIM-205ENST00000485947 NRROSQ86YC3 692 aa16.77■□□□□ 0.28
VIM-205ENST00000485947 CNTN4Q8IWV2 1026 aa16.77■□□□□ 0.28
VIM-205ENST00000485947 ARL14Q8N4G2 192 aa16.77■□□□□ 0.28
VIM-205ENST00000485947 PPM1NQ8N819 430 aa16.77■□□□□ 0.28
VIM-205ENST00000485947 OR13C4Q8NGS5 318 aa16.77■□□□□ 0.28
VIM-205ENST00000485947 ZDHHC1Q8WTX9 485 aa16.77■□□□□ 0.28
VIM-205ENST00000485947 CCDC97Q96F63 343 aaPredicted RBP16.77■□□□□ 0.28
VIM-205ENST00000485947 SGSM3Q96HU1 749 aa16.77■□□□□ 0.28
VIM-205ENST00000485947 DNAJC1Q96KC8 554 aaKnown RBP16.77■□□□□ 0.28
VIM-205ENST00000485947 SLC46A1Q96NT5 459 aa16.77■□□□□ 0.28
VIM-205ENST00000485947 ZSCAN5AQ9BUG6 496 aa16.77■□□□□ 0.28
VIM-205ENST00000485947 SMYD2Q9NRG4 433 aa16.77■□□□□ 0.28
VIM-205ENST00000485947 IL17CQ9P0M4 197 aa16.77■□□□□ 0.28
VIM-205ENST00000485947 TAAR2Q9P1P5 351 aa16.77■□□□□ 0.28
VIM-205ENST00000485947 LRIT1Q9P2V4 623 aa16.77■□□□□ 0.28
VIM-205ENST00000485947 CD84Q9UIB8 345 aa16.77■□□□□ 0.28
VIM-205ENST00000485947 SMIM23A6NLE4 172 aa16.76■□□□□ 0.27
VIM-205ENST00000485947 CXorf49A8MYA2 514 aaPredicted RBP16.76■□□□□ 0.27
VIM-205ENST00000485947 HMGB1P1B2RPK0 211 aaPredicted RBP16.76■□□□□ 0.27
VIM-205ENST00000485947 AURKAO14965 403 aa16.76■□□□□ 0.27
VIM-205ENST00000485947 TLX3O43711 291 aaPredicted RBP16.76■□□□□ 0.27
VIM-205ENST00000485947 MPOP05164 745 aa16.76■□□□□ 0.27
VIM-205ENST00000485947 RPLP0P05388 317 aaKnown RBP16.76■□□□□ 0.27
VIM-205ENST00000485947 ERVK-10P10266 1014 aa16.76■□□□□ 0.27
VIM-205ENST00000485947 CNTFP26441 200 aa16.76■□□□□ 0.27
VIM-205ENST00000485947 ARNTP27540 789 aa16.76■□□□□ 0.27
VIM-205ENST00000485947 SLCO1A2P46721 670 aa16.76■□□□□ 0.27
VIM-205ENST00000485947 CSE1LP55060 971 aaKnown RBP16.76■□□□□ 0.27
VIM-205ENST00000485947 CTBSQ01459 385 aa16.76■□□□□ 0.27
VIM-205ENST00000485947 PTPRRQ15256 657 aa16.76■□□□□ 0.27
VIM-205ENST00000485947 TEDDM1Q5T9Z0 273 aa16.76■□□□□ 0.27
VIM-205ENST00000485947 LGSNQ5TDP6 509 aa16.76■□□□□ 0.27
VIM-205ENST00000485947 AFTPHQ6ULP2 937 aa16.76■□□□□ 0.27
VIM-205ENST00000485947 KIAA0408Q6ZU52 694 aa16.76■□□□□ 0.27
VIM-205ENST00000485947 GALNT13Q8IUC8 556 aa16.76■□□□□ 0.27
VIM-205ENST00000485947 UNC5BQ8IZJ1 945 aa16.76■□□□□ 0.27
VIM-205ENST00000485947 AVL9Q8NBF6 648 aa16.76■□□□□ 0.27
VIM-205ENST00000485947 OR4K2Q8NGD2 314 aa16.76■□□□□ 0.27
VIM-205ENST00000485947 CCL4L1Q8NHW4 92 aa16.76■□□□□ 0.27
VIM-205ENST00000485947 DCAKDQ8WVC6 231 aa16.76■□□□□ 0.27
VIM-205ENST00000485947 HDAC10Q969S8 669 aa16.76■□□□□ 0.27
VIM-205ENST00000485947 ATXN7L3BQ96GX2 97 aa16.76■□□□□ 0.27
VIM-205ENST00000485947 CDKN2AIPNLQ96HQ2 116 aa16.76■□□□□ 0.27
VIM-205ENST00000485947 BBC3Q96PG8 261 aaPredicted RBP16.76■□□□□ 0.27
VIM-205ENST00000485947 CPNE1Q99829 537 aa16.76■□□□□ 0.27
VIM-205ENST00000485947 DPYSL5Q9BPU6 564 aa16.76■□□□□ 0.27
VIM-205ENST00000485947 SPATS2LQ9NUQ6 558 aaKnown RBP16.76■□□□□ 0.27
VIM-205ENST00000485947 TXNDC16Q9P2K2 825 aa16.76■□□□□ 0.27
VIM-205ENST00000485947 KCTD3Q9Y597 815 aa16.76■□□□□ 0.27
VIM-205ENST00000485947 RP1P56715 2156 aa16.75■□□□□ 0.27
VIM-205ENST00000485947 IQANK1A0A1B0GTG1 560 aa16.75■□□□□ 0.27
VIM-205ENST00000485947 B4DGG1 531 aa16.75■□□□□ 0.27
VIM-205ENST00000485947 SLC2A4P14672 509 aa16.75■□□□□ 0.27
VIM-205ENST00000485947 GP5P40197 560 aa16.75■□□□□ 0.27
VIM-205ENST00000485947 UCNP55089 124 aa16.75■□□□□ 0.27
VIM-205ENST00000485947 CCL7P80098 99 aa16.75■□□□□ 0.27
VIM-205ENST00000485947 SQSTM1Q13501 440 aa16.75■□□□□ 0.27
VIM-205ENST00000485947 COL28A1Q2UY09 1125 aa16.75■□□□□ 0.27
VIM-205ENST00000485947 HSP90AA5PQ58FG0 334 aa16.75■□□□□ 0.27
VIM-205ENST00000485947 TNFAIP8L3Q5GJ75 292 aa16.75■□□□□ 0.27
VIM-205ENST00000485947 RFLNAQ6ZTI6 216 aa16.75■□□□□ 0.27
VIM-205ENST00000485947 SPRED1Q7Z699 444 aa16.75■□□□□ 0.27
VIM-205ENST00000485947 GALNT7Q86SF2 657 aa16.75■□□□□ 0.27
VIM-205ENST00000485947 TRAM1L1Q8N609 369 aa16.75■□□□□ 0.27
VIM-205ENST00000485947 GPR150Q8NGU9 434 aa16.75■□□□□ 0.27
VIM-205ENST00000485947 ATP6V1G3Q96LB4 118 aa16.75■□□□□ 0.27
VIM-205ENST00000485947 PLEKHG4BQ96PX9 1271 aa16.75■□□□□ 0.27
VIM-205ENST00000485947 SMIM14Q96QK8 99 aa16.75■□□□□ 0.27
VIM-205ENST00000485947 DPH1Q9BZG8 443 aa16.75■□□□□ 0.27
VIM-205ENST00000485947 B3GNT4Q9C0J1 378 aa16.75■□□□□ 0.27
VIM-205ENST00000485947 ASCL3Q9NQ33 180 aa16.75■□□□□ 0.27
VIM-205ENST00000485947 IARS2Q9NSE4 1012 aaKnown RBP16.75■□□□□ 0.27
VIM-205ENST00000485947 FAM53CQ9NYF3 392 aa16.75■□□□□ 0.27
VIM-205ENST00000485947 CNOT6Q9ULM6 557 aaKnown RBP16.75■□□□□ 0.27
VIM-205ENST00000485947 SATB2Q9UPW6 733 aa16.75■□□□□ 0.27
VIM-205ENST00000485947 RNF215Q9Y6U7 377 aa16.75■□□□□ 0.27
VIM-205ENST00000485947 A0A1W2PQM1 296 aa16.74■□□□□ 0.27
VIM-205ENST00000485947 RHPN2P1A8MT19 583 aa16.74■□□□□ 0.27
VIM-205ENST00000485947 BUD23O43709 281 aaKnown RBP16.74■□□□□ 0.27
VIM-205ENST00000485947 DNAJC6O75061 913 aa16.74■□□□□ 0.27
VIM-205ENST00000485947 KRT38O76015 456 aa16.74■□□□□ 0.27
VIM-205ENST00000485947 GOT2P00505 430 aaKnown RBP16.74■□□□□ 0.27
VIM-205ENST00000485947 SLC4A1P02730 911 aa16.74■□□□□ 0.27
VIM-205ENST00000485947 ITGA2BP08514 1039 aa16.74■□□□□ 0.27
VIM-205ENST00000485947 OGNP20774 298 aaKnown RBP16.74■□□□□ 0.27
VIM-205ENST00000485947 ACTR1BP42025 376 aa16.74■□□□□ 0.27
VIM-205ENST00000485947 FASLGP48023 281 aa16.74■□□□□ 0.27
VIM-205ENST00000485947 POLD2P49005 469 aa16.74■□□□□ 0.27
VIM-205ENST00000485947 ARSDP51689 593 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms