RNA–Protein interactions for RNA: ENST00000482399.5

VPS52-218, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2 BASIC

Gene VPS52, Length 3,338 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-218ENST00000482399 NPTX1Q15818 432 aa12.54□□□□□ -0.4
VPS52-218ENST00000482399 SMN1Q16637 294 aaKnown RBP12.54□□□□□ -0.4
VPS52-218ENST00000482399 BRMS1LQ5PSV4 323 aa12.54□□□□□ -0.4
VPS52-218ENST00000482399 RSBN1Q5VWQ0 802 aaPredicted RBP12.54□□□□□ -0.4
VPS52-218ENST00000482399 SPATA19Q7Z5L4 167 aa12.54□□□□□ -0.4
VPS52-218ENST00000482399 P2RY8Q86VZ1 359 aa12.54□□□□□ -0.4
VPS52-218ENST00000482399 ATP6V0D2Q8N8Y2 350 aa12.54□□□□□ -0.4
VPS52-218ENST00000482399 OR2T11Q8NH01 316 aa12.54□□□□□ -0.4
VPS52-218ENST00000482399 IGSF8Q969P0 613 aa12.54□□□□□ -0.4
VPS52-218ENST00000482399 IMP4Q96G21 291 aaKnown RBP12.54□□□□□ -0.4
VPS52-218ENST00000482399 TSGA13Q96PP4 275 aa12.54□□□□□ -0.4
VPS52-218ENST00000482399 AARSD1Q9BTE6 412 aaKnown RBP12.54□□□□□ -0.4
VPS52-218ENST00000482399 PALMDQ9NP74 551 aa12.54□□□□□ -0.4
VPS52-218ENST00000482399 AIG1Q9NVV5 245 aa12.54□□□□□ -0.4
VPS52-218ENST00000482399 SMPD4Q9NXE4 827 aa12.54□□□□□ -0.4
VPS52-218ENST00000482399 PCDHA9Q9Y5H5 950 aa12.54□□□□□ -0.4
VPS52-218ENST00000482399 CXCR6O00574 342 aa12.53□□□□□ -0.4
VPS52-218ENST00000482399 TPD52L2O43399 206 aaKnown RBP12.53□□□□□ -0.4
VPS52-218ENST00000482399 UMPSP11172 480 aa12.53□□□□□ -0.4
VPS52-218ENST00000482399 MTHFD2P13995 350 aa12.53□□□□□ -0.4
VPS52-218ENST00000482399 OXCT1P55809 520 aa12.53□□□□□ -0.4
VPS52-218ENST00000482399 CACHD1Q5VU97 1274 aa12.53□□□□□ -0.4
VPS52-218ENST00000482399 ZNF621Q6ZSS3 439 aa12.53□□□□□ -0.4
VPS52-218ENST00000482399 TRUB1Q8WWH5 349 aaKnown RBP12.53□□□□□ -0.4
VPS52-218ENST00000482399 STON2Q8WXE9 905 aa12.53□□□□□ -0.4
VPS52-218ENST00000482399 ADAM2Q99965 735 aa12.53□□□□□ -0.4
VPS52-218ENST00000482399 TRIM62Q9BVG3 475 aa12.53□□□□□ -0.4
VPS52-218ENST00000482399 NSUN3Q9H649 340 aaKnown RBP12.53□□□□□ -0.4
VPS52-218ENST00000482399 COL1A2P08123 1366 aa12.53□□□□□ -0.4
VPS52-218ENST00000482399 LY75O60449 1722 aa12.53□□□□□ -0.4
VPS52-218ENST00000482399 SH3BP5O60239 455 aa12.53□□□□□ -0.4
VPS52-218ENST00000482399 KERAO60938 352 aa12.53□□□□□ -0.4
VPS52-218ENST00000482399 VPS4BO75351 444 aa12.53□□□□□ -0.4
VPS52-218ENST00000482399 CAPN15O75808 1086 aa12.53□□□□□ -0.4
VPS52-218ENST00000482399 CYP7B1O75881 506 aa12.53□□□□□ -0.4
VPS52-218ENST00000482399 PKMP14618 531 aaKnown RBP12.53□□□□□ -0.4
VPS52-218ENST00000482399 HRH2P25021 359 aa12.53□□□□□ -0.4
VPS52-218ENST00000482399 POU1F1P28069 291 aa12.53□□□□□ -0.4
VPS52-218ENST00000482399 CYP2C18P33260 490 aa12.53□□□□□ -0.4
VPS52-218ENST00000482399 ADRA1AP35348 466 aa12.53□□□□□ -0.4
VPS52-218ENST00000482399 CRYBB1P53674 252 aaPredicted RBP12.53□□□□□ -0.4
VPS52-218ENST00000482399 EEFSECP57772 596 aaKnown RBP12.53□□□□□ -0.4
VPS52-218ENST00000482399 SKIV2LQ15477 1246 aaKnown RBP12.53□□□□□ -0.4
VPS52-218ENST00000482399 KDELC1Q6UW63 502 aa12.53□□□□□ -0.4
VPS52-218ENST00000482399 FAM151BQ6UXP7 276 aa12.53□□□□□ -0.4
VPS52-218ENST00000482399 ALKAL1Q6UXT8 129 aa12.53□□□□□ -0.4
VPS52-218ENST00000482399 HACD2Q6Y1H2 254 aa12.53□□□□□ -0.4
VPS52-218ENST00000482399 EFL1Q7Z2Z2 1120 aaKnown RBP12.53□□□□□ -0.4
VPS52-218ENST00000482399 NLGN2Q8NFZ4 835 aa12.53□□□□□ -0.4
VPS52-218ENST00000482399 OR4F6Q8NGB9 312 aa12.53□□□□□ -0.4
VPS52-218ENST00000482399 OR13F1Q8NGS4 319 aa12.53□□□□□ -0.4
VPS52-218ENST00000482399 SCUBE2Q9NQ36 999 aa12.53□□□□□ -0.4
VPS52-218ENST00000482399 GTF2IRD1Q9UHL9 959 aa12.53□□□□□ -0.4
VPS52-218ENST00000482399 IKZF3Q9UKT9 509 aa12.53□□□□□ -0.4
VPS52-218ENST00000482399 FAM234BA2RU67 622 aa12.52□□□□□ -0.4
VPS52-218ENST00000482399 HTR3EA5X5Y0 456 aa12.52□□□□□ -0.4
VPS52-218ENST00000482399 A6NL46 340 aa12.52□□□□□ -0.4
VPS52-218ENST00000482399 ZNF99A8MXY4 864 aaPredicted RBP12.52□□□□□ -0.4
VPS52-218ENST00000482399 LDB2O43679 373 aa12.52□□□□□ -0.4
VPS52-218ENST00000482399 CRHBPP24387 322 aa12.52□□□□□ -0.4
VPS52-218ENST00000482399 S100A5P33763 92 aa12.52□□□□□ -0.4
VPS52-218ENST00000482399 RCVRNP35243 200 aa12.52□□□□□ -0.4
VPS52-218ENST00000482399 NUDT6P53370 316 aa12.52□□□□□ -0.4
VPS52-218ENST00000482399 TMBIM6P55061 237 aa12.52□□□□□ -0.4
VPS52-218ENST00000482399 ZCCHC8Q6NZY4 707 aaKnown RBP12.52□□□□□ -0.4
VPS52-218ENST00000482399 LETMD1Q6P1Q0 360 aa12.52□□□□□ -0.4
VPS52-218ENST00000482399 CLIP4Q8N3C7 705 aa12.52□□□□□ -0.4
VPS52-218ENST00000482399 LIX1Q8N485 282 aa12.52□□□□□ -0.4
VPS52-218ENST00000482399 LINC01465Q8N7H1 131 aa12.52□□□□□ -0.4
VPS52-218ENST00000482399 PROKR1Q8TCW9 393 aa12.52□□□□□ -0.4
VPS52-218ENST00000482399 SLC13A3Q8WWT9 602 aa12.52□□□□□ -0.4
VPS52-218ENST00000482399 TANKQ92844 425 aa12.52□□□□□ -0.4
VPS52-218ENST00000482399 SH3YL1Q96HL8 342 aaPredicted RBP12.52□□□□□ -0.4
VPS52-218ENST00000482399 NSMCE3Q96MG7 304 aa12.52□□□□□ -0.4
VPS52-218ENST00000482399 NEURL2Q9BR09 285 aa12.52□□□□□ -0.4
VPS52-218ENST00000482399 RHNO1Q9BSD3 238 aa12.52□□□□□ -0.4
VPS52-218ENST00000482399 ATP13A1Q9HD20 1204 aa12.52□□□□□ -0.4
VPS52-218ENST00000482399 FARSBQ9NSD9 589 aaKnown RBP12.52□□□□□ -0.4
VPS52-218ENST00000482399 ZNF451Q9Y4E5 1061 aa12.52□□□□□ -0.4
VPS52-218ENST00000482399 PCDHB9Q9Y5E1 797 aa12.52□□□□□ -0.4
VPS52-218ENST00000482399 GABRDO14764 452 aa12.52□□□□□ -0.41
VPS52-218ENST00000482399 ULK1O75385 1050 aa12.52□□□□□ -0.41
VPS52-218ENST00000482399 KRT75O95678 551 aa12.52□□□□□ -0.41
VPS52-218ENST00000482399 OXSR1O95747 527 aaPredicted RBP12.52□□□□□ -0.41
VPS52-218ENST00000482399 KRT8P05787 483 aa12.52□□□□□ -0.41
VPS52-218ENST00000482399 COL6A1P12109 1028 aa12.52□□□□□ -0.41
VPS52-218ENST00000482399 GTF2E2P29084 291 aaKnown RBP12.52□□□□□ -0.41
VPS52-218ENST00000482399 NEK2P51955 445 aa12.52□□□□□ -0.41
VPS52-218ENST00000482399 ZNF135P52742 658 aaPredicted RBP12.52□□□□□ -0.41
VPS52-218ENST00000482399 STC1P52823 247 aa12.52□□□□□ -0.41
VPS52-218ENST00000482399 RAPSNQ13702 412 aa12.52□□□□□ -0.41
VPS52-218ENST00000482399 RCAN2Q14206 197 aa12.52□□□□□ -0.41
VPS52-218ENST00000482399 KANK2Q63ZY3 851 aa12.52□□□□□ -0.41
VPS52-218ENST00000482399 PSAPL1Q6NUJ1 521 aa12.52□□□□□ -0.41
VPS52-218ENST00000482399 GATAD2AQ86YP4 633 aa12.52□□□□□ -0.41
VPS52-218ENST00000482399 OR8H2Q8N162 312 aa12.52□□□□□ -0.41
VPS52-218ENST00000482399 NPLOC4Q8TAT6 608 aa12.52□□□□□ -0.41
VPS52-218ENST00000482399 SLC22A17Q8WUG5 538 aa12.52□□□□□ -0.41
VPS52-218ENST00000482399 L3HYPDHQ96EM0 354 aa12.52□□□□□ -0.41
VPS52-218ENST00000482399 CSF3RQ99062 836 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms