RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	ASIC2	Q16515	512 aa		3.66	□□□□□ -1.82
PTCD3-209	ENST00000472044	FAM133B	Q5BKY9	247 aa	Known RBP	3.66	□□□□□ -1.82
PTCD3-209	ENST00000472044	ZNF628	Q5EBL2	1059 aa		3.66	□□□□□ -1.82
PTCD3-209	ENST00000472044	ALS2CL	Q60I27	953 aa		3.66	□□□□□ -1.82
PTCD3-209	ENST00000472044	TMEM211	Q6ICI0	200 aa		3.66	□□□□□ -1.82
PTCD3-209	ENST00000472044	SPSB3	Q6PJ21	355 aa		3.66	□□□□□ -1.82
PTCD3-209	ENST00000472044	FIGLA	Q6QHK4	219 aa		3.66	□□□□□ -1.82
PTCD3-209	ENST00000472044	PLXDC2	Q6UX71	529 aa		3.66	□□□□□ -1.82
PTCD3-209	ENST00000472044	LINGO4	Q6UY18	593 aa		3.66	□□□□□ -1.82
PTCD3-209	ENST00000472044	RAD9B	Q6WBX8	426 aa		3.66	□□□□□ -1.82
PTCD3-209	ENST00000472044	RBPMS2	Q6ZRY4	209 aa	Known RBP	3.66	□□□□□ -1.82
PTCD3-209	ENST00000472044	MEPCE	Q7L2J0	689 aa	Known RBP	3.66	□□□□□ -1.82
PTCD3-209	ENST00000472044	MAML2	Q8IZL2	1156 aa	Predicted RBP	3.66	□□□□□ -1.82
PTCD3-209	ENST00000472044	FBXO39	Q8N4B4	442 aa		3.66	□□□□□ -1.82
PTCD3-209	ENST00000472044	AFAP1	Q8N556	730 aa		3.66	□□□□□ -1.82
PTCD3-209	ENST00000472044	XXYLT1	Q8NBI6	393 aa		3.66	□□□□□ -1.82
PTCD3-209	ENST00000472044	RADIL	Q96JH8	1075 aa		3.66	□□□□□ -1.82
PTCD3-209	ENST00000472044	CNDP2	Q96KP4	475 aa	Known RBP	3.66	□□□□□ -1.82
PTCD3-209	ENST00000472044	PRMT6	Q96LA8	375 aa	Predicted RBP	3.66	□□□□□ -1.82
PTCD3-209	ENST00000472044	FAM81B	Q96LP2	452 aa		3.66	□□□□□ -1.82
PTCD3-209	ENST00000472044	LRRC1	Q9BTT6	524 aa		3.66	□□□□□ -1.82
PTCD3-209	ENST00000472044	EVA1A	Q9H8M9	152 aa		3.66	□□□□□ -1.82
PTCD3-209	ENST00000472044	ERVMER34-1	Q9H9K5	563 aa		3.66	□□□□□ -1.82
PTCD3-209	ENST00000472044	CCDC177	Q9NQR7	707 aa	Predicted RBP	3.66	□□□□□ -1.82
PTCD3-209	ENST00000472044	NPAP1	Q9NZP6	1156 aa		3.66	□□□□□ -1.82
PTCD3-209	ENST00000472044	BCCIP	Q9P287	314 aa	Known RBP eCLIP	3.66	□□□□□ -1.82
PTCD3-209	ENST00000472044	C5AR2	Q9P296	337 aa		3.66	□□□□□ -1.82
PTCD3-209	ENST00000472044	WDR35	Q9P2L0	1181 aa		3.66	□□□□□ -1.82
PTCD3-209	ENST00000472044	PCDHGB1	Q9Y5G3	927 aa		3.66	□□□□□ -1.82
PTCD3-209	ENST00000472044	DENND3	A2RUS2	1198 aa		3.65	□□□□□ -1.83
PTCD3-209	ENST00000472044	SMTNL1	A8MU46	457 aa		3.65	□□□□□ -1.83
PTCD3-209	ENST00000472044	PRAC2	D3DTV9	90 aa		3.65	□□□□□ -1.83
PTCD3-209	ENST00000472044	SYNGR3	O43761	229 aa		3.65	□□□□□ -1.83
PTCD3-209	ENST00000472044	TSPAN1	O60635	241 aa		3.65	□□□□□ -1.83
PTCD3-209	ENST00000472044	TFAP2A	P05549	437 aa		3.65	□□□□□ -1.83
PTCD3-209	ENST00000472044	FYN	P06241	537 aa		3.65	□□□□□ -1.83
PTCD3-209	ENST00000472044	CSF2RA	P15509	400 aa		3.65	□□□□□ -1.83
PTCD3-209	ENST00000472044	MATR3	P43243	847 aa	Known RBP eCLIP	3.65	□□□□□ -1.83
PTCD3-209	ENST00000472044	ZNF132	P52740	706 aa		3.65	□□□□□ -1.83
PTCD3-209	ENST00000472044	TERF1	P54274	439 aa		3.65	□□□□□ -1.83
PTCD3-209	ENST00000472044	RPL24	P83731	157 aa	Known RBP	3.65	□□□□□ -1.83
PTCD3-209	ENST00000472044	POU3F1	Q03052	451 aa	Predicted RBP	3.65	□□□□□ -1.83
PTCD3-209	ENST00000472044	PNRC1	Q12796	327 aa	Predicted RBP	3.65	□□□□□ -1.83
PTCD3-209	ENST00000472044	ZNF585B	Q52M93	769 aa		3.65	□□□□□ -1.83
PTCD3-209	ENST00000472044	IRAK1BP1	Q5VVH5	260 aa		3.65	□□□□□ -1.83
PTCD3-209	ENST00000472044	FAM171B	Q6P995	826 aa		3.65	□□□□□ -1.83
PTCD3-209	ENST00000472044	PACS1	Q6VY07	963 aa		3.65	□□□□□ -1.83
PTCD3-209	ENST00000472044	EXOC3L1	Q86VI1	746 aa		3.65	□□□□□ -1.83
PTCD3-209	ENST00000472044	TMEM173	Q86WV6	379 aa	Predicted RBP	3.65	□□□□□ -1.83
PTCD3-209	ENST00000472044	PTOV1	Q86YD1	416 aa		3.65	□□□□□ -1.83
PTCD3-209	ENST00000472044	ZNF595	Q8IYB9	648 aa		3.65	□□□□□ -1.83
PTCD3-209	ENST00000472044	DCP1B	Q8IZD4	617 aa	Known RBP	3.65	□□□□□ -1.83
PTCD3-209	ENST00000472044	ATL1	Q8WXF7	558 aa		3.65	□□□□□ -1.83
PTCD3-209	ENST00000472044	ZNF653	Q96CK0	615 aa		3.65	□□□□□ -1.83
PTCD3-209	ENST00000472044	RMDN1	Q96DB5	314 aa		3.65	□□□□□ -1.83
PTCD3-209	ENST00000472044	ZNF582	Q96NG8	517 aa	Predicted RBP	3.65	□□□□□ -1.83
PTCD3-209	ENST00000472044	SLX1A	Q9BQ83	275 aa		3.65	□□□□□ -1.83
PTCD3-209	ENST00000472044	NOL11	Q9H8H0	719 aa	Known RBP	3.65	□□□□□ -1.83
PTCD3-209	ENST00000472044	EQTN	Q9NQ60	294 aa		3.65	□□□□□ -1.83
PTCD3-209	ENST00000472044	MBNL1	Q9NR56	388 aa	Known RBP	3.65	□□□□□ -1.83
PTCD3-209	ENST00000472044	PRMT7	Q9NVM4	692 aa	Predicted RBP	3.65	□□□□□ -1.83
PTCD3-209	ENST00000472044	RHCG	Q9UBD6	479 aa		3.65	□□□□□ -1.83
PTCD3-209	ENST00000472044	GRIP1	Q9Y3R0	1128 aa		3.65	□□□□□ -1.83
PTCD3-209	ENST00000472044	GREB1L	Q9C091	1923 aa	Predicted RBP	3.65	□□□□□ -1.83
PTCD3-209	ENST00000472044	TEX13D	A0A0J9YY54	714 aa	Predicted RBP	3.64	□□□□□ -1.83
PTCD3-209	ENST00000472044	PRSS51	A0A1B0GVH4	220 aa		3.64	□□□□□ -1.83
PTCD3-209	ENST00000472044	FEZF1	A0PJY2	475 aa		3.64	□□□□□ -1.83
PTCD3-209	ENST00000472044	ELOVL7	A1L3X0	281 aa		3.64	□□□□□ -1.83
PTCD3-209	ENST00000472044	ANKUB1	A6NFN9	424 aa		3.64	□□□□□ -1.83
PTCD3-209	ENST00000472044	TMEM221	A6NGB7	291 aa		3.64	□□□□□ -1.83
PTCD3-209	ENST00000472044	PRR32	B1ATL7	298 aa		3.64	□□□□□ -1.83
PTCD3-209	ENST00000472044	OR10H2	O60403	315 aa		3.64	□□□□□ -1.83
PTCD3-209	ENST00000472044	TRUB2	O95900	331 aa	Known RBP	3.64	□□□□□ -1.83
PTCD3-209	ENST00000472044	APOA4	P06727	396 aa		3.64	□□□□□ -1.83
PTCD3-209	ENST00000472044	MCC	P23508	829 aa		3.64	□□□□□ -1.83
PTCD3-209	ENST00000472044	CPT2	P23786	658 aa		3.64	□□□□□ -1.83
PTCD3-209	ENST00000472044	MMP15	P51511	669 aa		3.64	□□□□□ -1.83
PTCD3-209	ENST00000472044	CSE1L	P55060	971 aa	Known RBP	3.64	□□□□□ -1.83
PTCD3-209	ENST00000472044	PTPRCAP	Q14761	206 aa		3.64	□□□□□ -1.83
PTCD3-209	ENST00000472044	IZUMO4	Q1ZYL8	232 aa		3.64	□□□□□ -1.83
PTCD3-209	ENST00000472044	ARMC4	Q5T2S8	1044 aa		3.64	□□□□□ -1.83
PTCD3-209	ENST00000472044	RNASEH2B	Q5TBB1	312 aa	Known RBP	3.64	□□□□□ -1.83
PTCD3-209	ENST00000472044	GRTP1	Q5TC63	336 aa		3.64	□□□□□ -1.83
PTCD3-209	ENST00000472044	CST9LP1	Q5W188	147 aa		3.64	□□□□□ -1.83
PTCD3-209	ENST00000472044	WBP2NL	Q6ICG8	309 aa		3.64	□□□□□ -1.83
PTCD3-209	ENST00000472044	CAPRIN2	Q6IMN6	1127 aa	Known RBP	3.64	□□□□□ -1.83
PTCD3-209	ENST00000472044	KLC3	Q6P597	504 aa		3.64	□□□□□ -1.83
PTCD3-209	ENST00000472044	FOXL2NB	Q6ZUU3	175 aa		3.64	□□□□□ -1.83
PTCD3-209	ENST00000472044	CHST3	Q7LGC8	479 aa		3.64	□□□□□ -1.83
PTCD3-209	ENST00000472044	DSG4	Q86SJ6	1040 aa		3.64	□□□□□ -1.83
PTCD3-209	ENST00000472044	L3MBTL4	Q8NA19	623 aa		3.64	□□□□□ -1.83
PTCD3-209	ENST00000472044	SEMA4D	Q92854	862 aa		3.64	□□□□□ -1.83
PTCD3-209	ENST00000472044	MTERF3	Q96E29	417 aa		3.64	□□□□□ -1.83
PTCD3-209	ENST00000472044	LINGO1	Q96FE5	620 aa		3.64	□□□□□ -1.83
PTCD3-209	ENST00000472044	PKP4	Q99569	1192 aa		3.64	□□□□□ -1.83
PTCD3-209	ENST00000472044	OLFM1	Q99784	485 aa		3.64	□□□□□ -1.83
PTCD3-209	ENST00000472044	BTBD10	Q9BSF8	475 aa		3.64	□□□□□ -1.83
PTCD3-209	ENST00000472044	WNT5B	Q9H1J7	359 aa		3.64	□□□□□ -1.83
PTCD3-209	ENST00000472044	GOLPH3L	Q9H4A5	285 aa		3.64	□□□□□ -1.83
PTCD3-209	ENST00000472044	LRRC4	Q9HBW1	653 aa		3.64	□□□□□ -1.83

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