RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 OR13C4Q8NGS5 318 aa16.19■□□□□ 0.18
CCDC28B-204ENST00000469003 APOBEC4Q8WW27 367 aaKnown RBP16.19■□□□□ 0.18
CCDC28B-204ENST00000469003 ALG3Q92685 438 aa16.19■□□□□ 0.18
CCDC28B-204ENST00000469003 ULK4Q96C45 1275 aa16.19■□□□□ 0.18
CCDC28B-204ENST00000469003 RNF31Q96EP0 1072 aa16.19■□□□□ 0.18
CCDC28B-204ENST00000469003 C12orf66Q96MD2 445 aa16.19■□□□□ 0.18
CCDC28B-204ENST00000469003 FCRL4Q96PJ5 515 aa16.19■□□□□ 0.18
CCDC28B-204ENST00000469003 TBL1YQ9BQ87 522 aa16.19■□□□□ 0.18
CCDC28B-204ENST00000469003 LACRTQ9GZZ8 138 aa16.19■□□□□ 0.18
CCDC28B-204ENST00000469003 ARNT2Q9HBZ2 717 aa16.19■□□□□ 0.18
CCDC28B-204ENST00000469003 FEZ2Q9UHY8 353 aaPredicted RBP16.19■□□□□ 0.18
CCDC28B-204ENST00000469003 LNPEPQ9UIQ6 1025 aa16.19■□□□□ 0.18
CCDC28B-204ENST00000469003 CRLS1Q9UJA2 301 aa16.19■□□□□ 0.18
CCDC28B-204ENST00000469003 PCDHB3Q9Y5E6 796 aa16.19■□□□□ 0.18
CCDC28B-204ENST00000469003 GRID2IPA4D2P6 1211 aa16.18■□□□□ 0.18
CCDC28B-204ENST00000469003 TLCD2A6NGC4 264 aa16.18■□□□□ 0.18
CCDC28B-204ENST00000469003 SGTAO43765 313 aa16.18■□□□□ 0.18
CCDC28B-204ENST00000469003 SLC35G4P0C7Q5 338 aa16.18■□□□□ 0.18
CCDC28B-204ENST00000469003 CCNYL3P0C7X3 344 aa16.18■□□□□ 0.18
CCDC28B-204ENST00000469003 RALBP11234 206 aa16.18■□□□□ 0.18
CCDC28B-204ENST00000469003 HADHAP40939 763 aa16.18■□□□□ 0.18
CCDC28B-204ENST00000469003 VAV2P52735 878 aa16.18■□□□□ 0.18
CCDC28B-204ENST00000469003 ACY1Q03154 408 aa16.18■□□□□ 0.18
CCDC28B-204ENST00000469003 SRSF1Q07955 248 aaKnown RBP eCLIP16.18■□□□□ 0.18
CCDC28B-204ENST00000469003 TUBB3Q13509 450 aa16.18■□□□□ 0.18
CCDC28B-204ENST00000469003 DNTTIP2Q5QJE6 756 aaKnown RBP16.18■□□□□ 0.18
CCDC28B-204ENST00000469003 ATP1A1-AS1Q5TC04 95 aa16.18■□□□□ 0.18
CCDC28B-204ENST00000469003 AADACL2Q6P093 401 aa16.18■□□□□ 0.18
CCDC28B-204ENST00000469003 DUS1LQ6P1R4 473 aaKnown RBP16.18■□□□□ 0.18
CCDC28B-204ENST00000469003 BPHLQ86WA6 291 aaPredicted RBP16.18■□□□□ 0.18
CCDC28B-204ENST00000469003 OOSP2Q86WS3 158 aa16.18■□□□□ 0.18
CCDC28B-204ENST00000469003 ACRBPQ8NEB7 543 aa16.18■□□□□ 0.18
CCDC28B-204ENST00000469003 HEXDCQ8WVB3 486 aa16.18■□□□□ 0.18
CCDC28B-204ENST00000469003 LRRC45Q96CN5 670 aa16.18■□□□□ 0.18
CCDC28B-204ENST00000469003 DCUN1D1Q96GG9 259 aa16.18■□□□□ 0.18
CCDC28B-204ENST00000469003 MAP3K3Q99759 626 aa16.18■□□□□ 0.18
CCDC28B-204ENST00000469003 KIR3DX1Q9H7L2 352 aa16.18■□□□□ 0.18
CCDC28B-204ENST00000469003 HRASLS2Q9NWW9 162 aa16.18■□□□□ 0.18
CCDC28B-204ENST00000469003 KCND3Q9UK17 655 aa16.18■□□□□ 0.18
CCDC28B-204ENST00000469003 RARRES3Q9UL19 164 aa16.18■□□□□ 0.18
CCDC28B-204ENST00000469003 UBA6A0AVT1 1052 aaPredicted RBP16.17■□□□□ 0.18
CCDC28B-204ENST00000469003 TIAF1O95411 115 aa16.17■□□□□ 0.18
CCDC28B-204ENST00000469003 FOLR1P15328 257 aa16.17■□□□□ 0.18
CCDC28B-204ENST00000469003 ITGALP20701 1170 aa16.17■□□□□ 0.18
CCDC28B-204ENST00000469003 PRLHRP49683 370 aa16.17■□□□□ 0.18
CCDC28B-204ENST00000469003 KCNAB1Q14722 419 aa16.17■□□□□ 0.18
CCDC28B-204ENST00000469003 CAPRIN2Q6IMN6 1127 aaKnown RBP16.17■□□□□ 0.18
CCDC28B-204ENST00000469003 SNX20Q7Z614 316 aa16.17■□□□□ 0.18
CCDC28B-204ENST00000469003 PTRH1Q86Y79 214 aaKnown RBP16.17■□□□□ 0.18
CCDC28B-204ENST00000469003 NXPE1Q8N323 547 aa16.17■□□□□ 0.18
CCDC28B-204ENST00000469003 SPDYE1Q8NFV5 336 aaPredicted RBP16.17■□□□□ 0.18
CCDC28B-204ENST00000469003 C9orf43Q8TAL5 461 aaPredicted RBP16.17■□□□□ 0.18
CCDC28B-204ENST00000469003 HM13Q8TCT9 377 aa16.17■□□□□ 0.18
CCDC28B-204ENST00000469003 NAT14Q8WUY8 206 aa16.17■□□□□ 0.18
CCDC28B-204ENST00000469003 RMDN2Q96LZ7 410 aa16.17■□□□□ 0.18
CCDC28B-204ENST00000469003 CCM2Q9BSQ5 444 aa16.17■□□□□ 0.18
CCDC28B-204ENST00000469003 FAM8A1Q9UBU6 413 aa16.17■□□□□ 0.18
CCDC28B-204ENST00000469003 SLC24A2Q9UI40 661 aa16.17■□□□□ 0.18
CCDC28B-204ENST00000469003 AMFRQ9UKV5 643 aa16.17■□□□□ 0.18
CCDC28B-204ENST00000469003 PADI1Q9ULC6 663 aa16.17■□□□□ 0.18
CCDC28B-204ENST00000469003 PCDHGA6Q9Y5G7 932 aa16.17■□□□□ 0.18
CCDC28B-204ENST00000469003 COLEC10Q9Y6Z7 277 aa16.17■□□□□ 0.18
CCDC28B-204ENST00000469003 C17orf113A0A1B0GUU1 675 aa16.16■□□□□ 0.18
CCDC28B-204ENST00000469003 CFAP99D6REC4 459 aa16.16■□□□□ 0.18
CCDC28B-204ENST00000469003 LDB2O43679 373 aa16.16■□□□□ 0.18
CCDC28B-204ENST00000469003 KATNA1O75449 491 aa16.16■□□□□ 0.18
CCDC28B-204ENST00000469003 POLBP06746 335 aa16.16■□□□□ 0.18
CCDC28B-204ENST00000469003 EBLN1P0CF75 366 aa16.16■□□□□ 0.18
CCDC28B-204ENST00000469003 ATP1B2P14415 290 aaPredicted RBP16.16■□□□□ 0.18
CCDC28B-204ENST00000469003 NDUFS1P28331 727 aa16.16■□□□□ 0.18
CCDC28B-204ENST00000469003 ARL4DP49703 201 aa16.16■□□□□ 0.18
CCDC28B-204ENST00000469003 HSD11B2P80365 405 aa16.16■□□□□ 0.18
CCDC28B-204ENST00000469003 TMPRSS15P98073 1019 aa16.16■□□□□ 0.18
CCDC28B-204ENST00000469003 DNASE1L3Q13609 305 aa16.16■□□□□ 0.18
CCDC28B-204ENST00000469003 SPARCL1Q14515 664 aa16.16■□□□□ 0.18
CCDC28B-204ENST00000469003 GPR33Q49SQ1 333 aa16.16■□□□□ 0.18
CCDC28B-204ENST00000469003 KCTD11Q693B1 232 aa16.16■□□□□ 0.18
CCDC28B-204ENST00000469003 PWWP2BQ6NUJ5 590 aa16.16■□□□□ 0.18
CCDC28B-204ENST00000469003 ARMC6Q6NXE6 501 aa16.16■□□□□ 0.18
CCDC28B-204ENST00000469003 KIAA1328Q86T90 577 aa16.16■□□□□ 0.18
CCDC28B-204ENST00000469003 CFAP206Q8IYR0 622 aa16.16■□□□□ 0.18
CCDC28B-204ENST00000469003 CARFQ8N187 725 aa16.16■□□□□ 0.18
CCDC28B-204ENST00000469003 D2HGDHQ8N465 521 aa16.16■□□□□ 0.18
CCDC28B-204ENST00000469003 LILRA3Q8N6C8 439 aaPredicted RBP16.16■□□□□ 0.18
CCDC28B-204ENST00000469003 TTC13Q8NBP0 860 aa16.16■□□□□ 0.18
CCDC28B-204ENST00000469003 COPS8Q99627 209 aa16.16■□□□□ 0.18
CCDC28B-204ENST00000469003 RBSNQ9H1K0 784 aa16.16■□□□□ 0.18
CCDC28B-204ENST00000469003 FAM96AQ9H5X1 160 aa16.16■□□□□ 0.18
CCDC28B-204ENST00000469003 LHX9Q9NQ69 397 aa16.16■□□□□ 0.18
CCDC28B-204ENST00000469003 FGF21Q9NSA1 209 aa16.16■□□□□ 0.18
CCDC28B-204ENST00000469003 HEBP2Q9Y5Z4 205 aa16.16■□□□□ 0.18
CCDC28B-204ENST00000469003 FLNCQ14315 2725 aa16.15■□□□□ 0.18
CCDC28B-204ENST00000469003 OR6C74A6NCV1 312 aa16.15■□□□□ 0.18
CCDC28B-204ENST00000469003 GOLGA6L9A6NEM1 432 aa16.15■□□□□ 0.18
CCDC28B-204ENST00000469003 C21orf140B9A014 251 aa16.15■□□□□ 0.18
CCDC28B-204ENST00000469003 ZBTB11O95625 1053 aaPredicted RBP16.15■□□□□ 0.18
CCDC28B-204ENST00000469003 RECKO95980 971 aa16.15■□□□□ 0.18
CCDC28B-204ENST00000469003 MC4RP32245 332 aa16.15■□□□□ 0.18
CCDC28B-204ENST00000469003 TLE1Q04724 770 aa16.15■□□□□ 0.18
CCDC28B-204ENST00000469003 SEPT6Q14141 434 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms