RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 TAF1AQ15573 450 aaPredicted RBP20.56■□□□□ 0.88
COL9A3-207ENST00000467819 ITPRIPL1Q6GPH6 555 aa20.56■□□□□ 0.88
COL9A3-207ENST00000467819 C11orf63Q6NUN7 778 aa20.56■□□□□ 0.88
COL9A3-207ENST00000467819 KMT5CQ86Y97 462 aa20.56■□□□□ 0.88
COL9A3-207ENST00000467819 FCRL4Q96PJ5 515 aa20.56■□□□□ 0.88
COL9A3-207ENST00000467819 TLK1Q9UKI8 766 aa20.56■□□□□ 0.88
COL9A3-207ENST00000467819 PLAAQ9Y263 795 aa20.56■□□□□ 0.88
COL9A3-207ENST00000467819 OR6C74A6NCV1 312 aa20.55■□□□□ 0.88
COL9A3-207ENST00000467819 SRP72O76094 671 aaKnown RBP20.55■□□□□ 0.88
COL9A3-207ENST00000467819 PSMB4P28070 264 aa20.55■□□□□ 0.88
COL9A3-207ENST00000467819 PMS2P54278 862 aa20.55■□□□□ 0.88
COL9A3-207ENST00000467819 HSD11B2P80365 405 aa20.55■□□□□ 0.88
COL9A3-207ENST00000467819 GPR19Q15760 415 aa20.55■□□□□ 0.88
COL9A3-207ENST00000467819 SKOR2Q2VWA4 1001 aaPredicted RBP20.55■□□□□ 0.88
COL9A3-207ENST00000467819 TCTN3Q6NUS6 607 aa20.55■□□□□ 0.88
COL9A3-207ENST00000467819 ARMC6Q6NXE6 501 aa20.55■□□□□ 0.88
COL9A3-207ENST00000467819 FBXO38Q6PIJ6 1188 aa20.55■□□□□ 0.88
COL9A3-207ENST00000467819 ASB18Q6ZVZ8 466 aa20.55■□□□□ 0.88
COL9A3-207ENST00000467819 DAAM2Q86T65 1068 aa20.55■□□□□ 0.88
COL9A3-207ENST00000467819 D2HGDHQ8N465 521 aa20.55■□□□□ 0.88
COL9A3-207ENST00000467819 TEX19Q8NA77 164 aa20.55■□□□□ 0.88
COL9A3-207ENST00000467819 OR2L2Q8NH16 312 aa20.55■□□□□ 0.88
COL9A3-207ENST00000467819 SLC24A2Q9UI40 661 aa20.55■□□□□ 0.88
COL9A3-207ENST00000467819 ACSL5Q9ULC5 683 aa20.55■□□□□ 0.88
COL9A3-207ENST00000467819 PCDHA13Q9Y5I0 950 aa20.55■□□□□ 0.88
COL9A3-207ENST00000467819 DNAJB5O75953 348 aa20.54■□□□□ 0.88
COL9A3-207ENST00000467819 POLBP06746 335 aa20.54■□□□□ 0.88
COL9A3-207ENST00000467819 OTUD4Q01804 1114 aaKnown RBP20.54■□□□□ 0.88
COL9A3-207ENST00000467819 UBAP2LQ14157 1087 aaKnown RBP20.54■□□□□ 0.88
COL9A3-207ENST00000467819 GSE1Q14687 1217 aa20.54■□□□□ 0.88
COL9A3-207ENST00000467819 BCL7AQ4VC05 210 aa20.54■□□□□ 0.88
COL9A3-207ENST00000467819 BPHLQ86WA6 291 aaPredicted RBP20.54■□□□□ 0.88
COL9A3-207ENST00000467819 TMEM126BQ8IUX1 230 aa20.54■□□□□ 0.88
COL9A3-207ENST00000467819 LILRA3Q8N6C8 439 aaPredicted RBP20.54■□□□□ 0.88
COL9A3-207ENST00000467819 TC2NQ8N9U0 490 aa20.54■□□□□ 0.88
COL9A3-207ENST00000467819 OR13C4Q8NGS5 318 aa20.54■□□□□ 0.88
COL9A3-207ENST00000467819 ACTL9Q8TC94 416 aa20.54■□□□□ 0.88
COL9A3-207ENST00000467819 RMDN2Q96LZ7 410 aa20.54■□□□□ 0.88
COL9A3-207ENST00000467819 PPM1MQ96MI6 270 aa20.54■□□□□ 0.88
COL9A3-207ENST00000467819 KIR3DX1Q9H7L2 352 aa20.54■□□□□ 0.88
COL9A3-207ENST00000467819 SOHLH2Q9NX45 425 aa20.54■□□□□ 0.88
COL9A3-207ENST00000467819 ANKMY1Q9P2S6 941 aa20.54■□□□□ 0.88
COL9A3-207ENST00000467819 CRLS1Q9UJA2 301 aa20.54■□□□□ 0.88
COL9A3-207ENST00000467819 RP1L1Q8IWN7 2480 aaPredicted RBP20.54■□□□□ 0.88
COL9A3-207ENST00000467819 DDX3YO15523 660 aaKnown RBP20.53■□□□□ 0.88
COL9A3-207ENST00000467819 SGTAO43765 313 aa20.53■□□□□ 0.88
COL9A3-207ENST00000467819 CPNE3O75131 537 aaKnown RBP20.53■□□□□ 0.88
COL9A3-207ENST00000467819 SCRG1O75711 98 aa20.53■□□□□ 0.88
COL9A3-207ENST00000467819 ZBTB11O95625 1053 aaPredicted RBP20.53■□□□□ 0.88
COL9A3-207ENST00000467819 ADRA1AP35348 466 aa20.53■□□□□ 0.88
COL9A3-207ENST00000467819 KPNA2P52292 529 aaKnown RBP20.53■□□□□ 0.88
COL9A3-207ENST00000467819 TUBB4BP68371 445 aa20.53■□□□□ 0.88
COL9A3-207ENST00000467819 TMPRSS15P98073 1019 aa20.53■□□□□ 0.88
COL9A3-207ENST00000467819 PDE1BQ01064 536 aa20.53■□□□□ 0.88
COL9A3-207ENST00000467819 SRSF1Q07955 248 aaKnown RBP eCLIP20.53■□□□□ 0.88
COL9A3-207ENST00000467819 TUBB2AQ13885 445 aa20.53■□□□□ 0.88
COL9A3-207ENST00000467819 KRT33BQ14525 404 aa20.53■□□□□ 0.88
COL9A3-207ENST00000467819 RANBP10Q6VN20 620 aa20.53■□□□□ 0.88
COL9A3-207ENST00000467819 CDKL3Q8IVW4 592 aaPredicted RBP20.53■□□□□ 0.88
COL9A3-207ENST00000467819 CFAP206Q8IYR0 622 aa20.53■□□□□ 0.88
COL9A3-207ENST00000467819 DCUN1D1Q96GG9 259 aa20.53■□□□□ 0.88
COL9A3-207ENST00000467819 FAM118BQ9BPY3 351 aa20.53■□□□□ 0.88
COL9A3-207ENST00000467819 FERMT1Q9BQL6 677 aa20.53■□□□□ 0.88
COL9A3-207ENST00000467819 TUBB2BQ9BVA1 445 aa20.53■□□□□ 0.88
COL9A3-207ENST00000467819 TRIM55Q9BYV6 548 aa20.53■□□□□ 0.88
COL9A3-207ENST00000467819 KLHL33A6NCF5 533 aa20.52■□□□□ 0.88
COL9A3-207ENST00000467819 C5orf60A6NFR6 353 aa20.52■□□□□ 0.88
COL9A3-207ENST00000467819 KCNN4O15554 427 aa20.52■□□□□ 0.88
COL9A3-207ENST00000467819 LCA5LO95447 670 aa20.52■□□□□ 0.88
COL9A3-207ENST00000467819 RECKO95980 971 aa20.52■□□□□ 0.88
COL9A3-207ENST00000467819 POLR2CP19387 275 aaPredicted RBP20.52■□□□□ 0.88
COL9A3-207ENST00000467819 CTNNA2P26232 953 aa20.52■□□□□ 0.88
COL9A3-207ENST00000467819 PTPN4P29074 926 aa20.52■□□□□ 0.88
COL9A3-207ENST00000467819 MLLT10P55197 1068 aa20.52■□□□□ 0.88
COL9A3-207ENST00000467819 EIF3EP60228 445 aaKnown RBP20.52■□□□□ 0.88
COL9A3-207ENST00000467819 RPS15P62841 145 aaKnown RBP20.52■□□□□ 0.88
COL9A3-207ENST00000467819 XIAPP98170 497 aa20.52■□□□□ 0.88
COL9A3-207ENST00000467819 SEMA5AQ13591 1074 aa20.52■□□□□ 0.88
COL9A3-207ENST00000467819 PRPSAP1Q14558 356 aa20.52■□□□□ 0.88
COL9A3-207ENST00000467819 SPA17Q15506 151 aa20.52■□□□□ 0.88
COL9A3-207ENST00000467819 ANKRD20A2Q5SQ80 823 aa20.52■□□□□ 0.88
COL9A3-207ENST00000467819 TMTC4Q5T4D3 741 aa20.52■□□□□ 0.88
COL9A3-207ENST00000467819 ANKRD20A1Q5TYW2 823 aa20.52■□□□□ 0.88
COL9A3-207ENST00000467819 ANKRD20A3Q5VUR7 823 aa20.52■□□□□ 0.88
COL9A3-207ENST00000467819 OR4E2Q8NGC2 313 aa20.52■□□□□ 0.88
COL9A3-207ENST00000467819 ZFPM2Q8WW38 1151 aa20.52■□□□□ 0.88
COL9A3-207ENST00000467819 MR1Q95460 341 aa20.52■□□□□ 0.88
COL9A3-207ENST00000467819 ZNF501Q96CX3 271 aaPredicted RBP20.52■□□□□ 0.88
COL9A3-207ENST00000467819 GPR87Q9BY21 358 aa20.52■□□□□ 0.88
COL9A3-207ENST00000467819 FAM96AQ9H5X1 160 aa20.52■□□□□ 0.88
COL9A3-207ENST00000467819 AAR2Q9Y312 384 aaKnown RBP20.52■□□□□ 0.88
COL9A3-207ENST00000467819 COLEC10Q9Y6Z7 277 aa20.52■□□□□ 0.88
COL9A3-207ENST00000467819 USP9XQ93008 2570 aaPredicted RBP20.52■□□□□ 0.88
COL9A3-207ENST00000467819 CCL22O00626 93 aa20.51■□□□□ 0.87
COL9A3-207ENST00000467819 PJA2O43164 708 aa20.51■□□□□ 0.87
COL9A3-207ENST00000467819 CRTAMO95727 393 aa20.51■□□□□ 0.87
COL9A3-207ENST00000467819 PDGFAP04085 211 aa20.51■□□□□ 0.87
COL9A3-207ENST00000467819 RBP3P10745 1247 aa20.51■□□□□ 0.87
COL9A3-207ENST00000467819 RALBP11234 206 aa20.51■□□□□ 0.87
COL9A3-207ENST00000467819 CTNNA1P35221 906 aaKnown RBP20.51■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms