RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 K7EM74 188 aa11.71□□□□□ -0.53
SQSTM1-206ENST00000466342 GAPDHSO14556 408 aaPredicted RBP11.71□□□□□ -0.53
SQSTM1-206ENST00000466342 DNALI1O14645 258 aaPredicted RBP11.71□□□□□ -0.53
SQSTM1-206ENST00000466342 INPP4BO15327 924 aa11.71□□□□□ -0.53
SQSTM1-206ENST00000466342 ZW10O43264 779 aa11.71□□□□□ -0.53
SQSTM1-206ENST00000466342 RAD1O60671 282 aa11.71□□□□□ -0.53
SQSTM1-206ENST00000466342 MLNP12872 115 aa11.71□□□□□ -0.53
SQSTM1-206ENST00000466342 NR1D1P20393 614 aa11.71□□□□□ -0.53
SQSTM1-206ENST00000466342 ADRA1DP25100 572 aa11.71□□□□□ -0.53
SQSTM1-206ENST00000466342 IVDP26440 423 aa11.71□□□□□ -0.53
SQSTM1-206ENST00000466342 HADHAP40939 763 aa11.71□□□□□ -0.53
SQSTM1-206ENST00000466342 GNPDA1P46926 289 aa11.71□□□□□ -0.53
SQSTM1-206ENST00000466342 NPY2RP49146 381 aa11.71□□□□□ -0.53
SQSTM1-206ENST00000466342 SESN2P58004 480 aaPredicted RBP11.71□□□□□ -0.53
SQSTM1-206ENST00000466342 ITGA9Q13797 1035 aa11.71□□□□□ -0.53
SQSTM1-206ENST00000466342 CHRNA6Q15825 494 aa11.71□□□□□ -0.53
SQSTM1-206ENST00000466342 RNASEH2BQ5TBB1 312 aaKnown RBP11.71□□□□□ -0.53
SQSTM1-206ENST00000466342 FAM151BQ6UXP7 276 aa11.71□□□□□ -0.53
SQSTM1-206ENST00000466342 MAATS1Q7Z4T9 603 aa11.71□□□□□ -0.53
SQSTM1-206ENST00000466342 PCGF5Q86SE9 256 aa11.71□□□□□ -0.53
SQSTM1-206ENST00000466342 TRIM74Q86UV6 250 aa11.71□□□□□ -0.53
SQSTM1-206ENST00000466342 PIM3Q86V86 326 aa11.71□□□□□ -0.53
SQSTM1-206ENST00000466342 CPT1CQ8TCG5 803 aa11.71□□□□□ -0.53
SQSTM1-206ENST00000466342 DNAJC1Q96KC8 554 aaKnown RBP11.71□□□□□ -0.53
SQSTM1-206ENST00000466342 EFHD1Q9BUP0 239 aa11.71□□□□□ -0.53
SQSTM1-206ENST00000466342 NLE1Q9NVX2 485 aaPredicted RBP11.71□□□□□ -0.53
SQSTM1-206ENST00000466342 BFARQ9NZS9 450 aa11.71□□□□□ -0.53
SQSTM1-206ENST00000466342 FKBPLQ9UIM3 349 aa11.71□□□□□ -0.53
SQSTM1-206ENST00000466342 RIMKLBQ9ULI2 386 aa11.71□□□□□ -0.53
SQSTM1-206ENST00000466342 CNOT6Q9ULM6 557 aaKnown RBP11.71□□□□□ -0.53
SQSTM1-206ENST00000466342 TCAF1Q9Y4C2 921 aa11.71□□□□□ -0.53
SQSTM1-206ENST00000466342 FAM187AA6NFU0 413 aa11.7□□□□□ -0.54
SQSTM1-206ENST00000466342 B4DGG1 531 aa11.7□□□□□ -0.54
SQSTM1-206ENST00000466342 H7C0S8 307 aa11.7□□□□□ -0.54
SQSTM1-206ENST00000466342 HGSO14964 777 aaPredicted RBP11.7□□□□□ -0.54
SQSTM1-206ENST00000466342 RAD51CO43502 376 aa11.7□□□□□ -0.54
SQSTM1-206ENST00000466342 SLC25A14O95258 325 aaPredicted RBP11.7□□□□□ -0.54
SQSTM1-206ENST00000466342 PRAMEF1O95521 474 aa11.7□□□□□ -0.54
SQSTM1-206ENST00000466342 CPNE6O95741 557 aa11.7□□□□□ -0.54
SQSTM1-206ENST00000466342 PSMA3P25788 255 aa11.7□□□□□ -0.54
SQSTM1-206ENST00000466342 MGAT1P26572 445 aa11.7□□□□□ -0.54
SQSTM1-206ENST00000466342 GRNP28799 593 aaKnown RBP11.7□□□□□ -0.54
SQSTM1-206ENST00000466342 OAS2P29728 719 aaKnown RBP11.7□□□□□ -0.54
SQSTM1-206ENST00000466342 POLD2P49005 469 aa11.7□□□□□ -0.54
SQSTM1-206ENST00000466342 TMPRSS15P98073 1019 aa11.7□□□□□ -0.54
SQSTM1-206ENST00000466342 XIAPP98170 497 aa11.7□□□□□ -0.54
SQSTM1-206ENST00000466342 CTBSQ01459 385 aa11.7□□□□□ -0.54
SQSTM1-206ENST00000466342 ATP13A5Q4VNC0 1218 aa11.7□□□□□ -0.54
SQSTM1-206ENST00000466342 CCDC38Q502W7 563 aa11.7□□□□□ -0.54
SQSTM1-206ENST00000466342 CRTC2Q53ET0 693 aaPredicted RBP11.7□□□□□ -0.54
SQSTM1-206ENST00000466342 PCID2Q5JVF3 399 aa11.7□□□□□ -0.54
SQSTM1-206ENST00000466342 IZUMO3Q5VZ72 239 aa11.7□□□□□ -0.54
SQSTM1-206ENST00000466342 ARMC3Q5W041 872 aa11.7□□□□□ -0.54
SQSTM1-206ENST00000466342 ASB18Q6ZVZ8 466 aa11.7□□□□□ -0.54
SQSTM1-206ENST00000466342 NLRP9Q7RTR0 991 aa11.7□□□□□ -0.54
SQSTM1-206ENST00000466342 CAND1Q86VP6 1230 aaKnown RBP11.7□□□□□ -0.54
SQSTM1-206ENST00000466342 HOOK3Q86VS8 718 aa11.7□□□□□ -0.54
SQSTM1-206ENST00000466342 PHYKPLQ8IUZ5 450 aa11.7□□□□□ -0.54
SQSTM1-206ENST00000466342 PPHLN1Q8NEY8 458 aaKnown RBP11.7□□□□□ -0.54
SQSTM1-206ENST00000466342 ZDHHC1Q8WTX9 485 aa11.7□□□□□ -0.54
SQSTM1-206ENST00000466342 PEX13Q92968 403 aa11.7□□□□□ -0.54
SQSTM1-206ENST00000466342 GLYATL1Q969I3 302 aa11.7□□□□□ -0.54
SQSTM1-206ENST00000466342 PMEPA1Q969W9 287 aa11.7□□□□□ -0.54
SQSTM1-206ENST00000466342 MOCOSQ96EN8 888 aa11.7□□□□□ -0.54
SQSTM1-206ENST00000466342 SERPINB12Q96P63 405 aa11.7□□□□□ -0.54
SQSTM1-206ENST00000466342 ASPSCR1Q9BZE9 553 aa11.7□□□□□ -0.54
SQSTM1-206ENST00000466342 IL22Q9GZX6 179 aa11.7□□□□□ -0.54
SQSTM1-206ENST00000466342 GPN2Q9H9Y4 310 aaPredicted RBP11.7□□□□□ -0.54
SQSTM1-206ENST00000466342 RDH14Q9HBH5 336 aa11.7□□□□□ -0.54
SQSTM1-206ENST00000466342 XAB2Q9HCS7 855 aaKnown RBP11.7□□□□□ -0.54
SQSTM1-206ENST00000466342 SMOXQ9NWM0 555 aa11.7□□□□□ -0.54
SQSTM1-206ENST00000466342 TAAR2Q9P1P5 351 aa11.7□□□□□ -0.54
SQSTM1-206ENST00000466342 VPS18Q9P253 973 aa11.7□□□□□ -0.54
SQSTM1-206ENST00000466342 B3GALT1Q9Y5Z6 326 aa11.7□□□□□ -0.54
SQSTM1-206ENST00000466342 CELSR1Q9NYQ6 3014 aa11.7□□□□□ -0.54
SQSTM1-206ENST00000466342 APCP25054 2843 aa11.69□□□□□ -0.54
SQSTM1-206ENST00000466342 ADGRG4Q8IZF6 3080 aa11.69□□□□□ -0.54
SQSTM1-206ENST00000466342 F8P00451 2351 aa11.69□□□□□ -0.54
SQSTM1-206ENST00000466342 CCDC78A2IDD5 438 aa11.69□□□□□ -0.54
SQSTM1-206ENST00000466342 EFCAB8A8MWE9 144 aa11.69□□□□□ -0.54
SQSTM1-206ENST00000466342 MKRN2OSH3BPM6 223 aa11.69□□□□□ -0.54
SQSTM1-206ENST00000466342 GOLGA8MH3BSY2 632 aa11.69□□□□□ -0.54
SQSTM1-206ENST00000466342 SMAPO00193 183 aa11.69□□□□□ -0.54
SQSTM1-206ENST00000466342 CCL22O00626 93 aa11.69□□□□□ -0.54
SQSTM1-206ENST00000466342 GPR39O43194 453 aa11.69□□□□□ -0.54
SQSTM1-206ENST00000466342 SRP72O76094 671 aaKnown RBP11.69□□□□□ -0.54
SQSTM1-206ENST00000466342 SEC31AO94979 1220 aaKnown RBP11.69□□□□□ -0.54
SQSTM1-206ENST00000466342 AK4P27144 223 aaPredicted RBP11.69□□□□□ -0.54
SQSTM1-206ENST00000466342 GPR3P46089 330 aa11.69□□□□□ -0.54
SQSTM1-206ENST00000466342 CRADDP78560 199 aa11.69□□□□□ -0.54
SQSTM1-206ENST00000466342 B4GALNT1Q00973 533 aa11.69□□□□□ -0.54
SQSTM1-206ENST00000466342 MC1RQ01726 317 aa11.69□□□□□ -0.54
SQSTM1-206ENST00000466342 ACVR1Q04771 509 aa11.69□□□□□ -0.54
SQSTM1-206ENST00000466342 LRP8Q14114 963 aa11.69□□□□□ -0.54
SQSTM1-206ENST00000466342 NR1D2Q14995 579 aa11.69□□□□□ -0.54
SQSTM1-206ENST00000466342 MORF4L2Q15014 288 aa11.69□□□□□ -0.54
SQSTM1-206ENST00000466342 CLPPQ16740 277 aaPredicted RBP11.69□□□□□ -0.54
SQSTM1-206ENST00000466342 MAP9Q49MG5 647 aa11.69□□□□□ -0.54
SQSTM1-206ENST00000466342 PYCR3Q53H96 274 aa11.69□□□□□ -0.54
SQSTM1-206ENST00000466342 TSTD2Q5T7W7 516 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms