RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 SERPINA9Q86WD7 417 aa17.41■□□□□ 0.38
COL7A1-205ENST00000465238 NAGSQ8N159 534 aa17.41■□□□□ 0.38
COL7A1-205ENST00000465238 PDIK1LQ8N165 341 aa17.41■□□□□ 0.38
COL7A1-205ENST00000465238 USP7Q93009 1102 aa17.41■□□□□ 0.38
COL7A1-205ENST00000465238 DPH5Q9H2P9 285 aa17.41■□□□□ 0.38
COL7A1-205ENST00000465238 TREX1Q9NSU2 369 aa17.41■□□□□ 0.38
COL7A1-205ENST00000465238 ZDHHC3Q9NYG2 299 aa17.41■□□□□ 0.38
COL7A1-205ENST00000465238 PLEKHM1Q9Y4G2 1056 aa17.41■□□□□ 0.38
COL7A1-205ENST00000465238 PCDHB11Q9Y5F2 797 aa17.41■□□□□ 0.38
COL7A1-205ENST00000465238 TRBV5-4A0A0C4DH59 114 aa17.4■□□□□ 0.38
COL7A1-205ENST00000465238 FAM237BA0A1B0GVD1 139 aa17.4■□□□□ 0.38
COL7A1-205ENST00000465238 AGRPO00253 132 aa17.4■□□□□ 0.38
COL7A1-205ENST00000465238 ACP5P13686 325 aa17.4■□□□□ 0.38
COL7A1-205ENST00000465238 PAMP19021 973 aa17.4■□□□□ 0.38
COL7A1-205ENST00000465238 CD1CP29017 333 aa17.4■□□□□ 0.38
COL7A1-205ENST00000465238 PPARGP37231 505 aaPredicted RBP17.4■□□□□ 0.38
COL7A1-205ENST00000465238 ACTR1BP42025 376 aa17.4■□□□□ 0.38
COL7A1-205ENST00000465238 MAGEA3P43357 314 aa17.4■□□□□ 0.38
COL7A1-205ENST00000465238 CDKN1CP49918 316 aaPredicted RBP17.4■□□□□ 0.38
COL7A1-205ENST00000465238 ACTR1AP61163 376 aa17.4■□□□□ 0.38
COL7A1-205ENST00000465238 LYPLAL1Q5VWZ2 237 aa17.4■□□□□ 0.38
COL7A1-205ENST00000465238 ZNF574Q6ZN55 896 aaPredicted RBP17.4■□□□□ 0.38
COL7A1-205ENST00000465238 USP53Q70EK8 1073 aa17.4■□□□□ 0.38
COL7A1-205ENST00000465238 TRAPPC5Q8IUR0 188 aa17.4■□□□□ 0.38
COL7A1-205ENST00000465238 CEP112Q8N8E3 955 aa17.4■□□□□ 0.38
COL7A1-205ENST00000465238 RASGEF1AQ8N9B8 481 aa17.4■□□□□ 0.38
COL7A1-205ENST00000465238 PATE1Q8WXA2 126 aa17.4■□□□□ 0.38
COL7A1-205ENST00000465238 MFSD3Q96ES6 412 aa17.4■□□□□ 0.38
COL7A1-205ENST00000465238 SGF29Q96ES7 293 aa17.4■□□□□ 0.38
COL7A1-205ENST00000465238 ZNF514Q96K75 400 aaPredicted RBP17.4■□□□□ 0.38
COL7A1-205ENST00000465238 SIGLEC10Q96LC7 697 aa17.4■□□□□ 0.38
COL7A1-205ENST00000465238 NUDT22Q9BRQ3 303 aa17.4■□□□□ 0.38
COL7A1-205ENST00000465238 FOXJ2Q9P0K8 574 aa17.4■□□□□ 0.38
COL7A1-205ENST00000465238 WHRNQ9P202 907 aa17.4■□□□□ 0.38
COL7A1-205ENST00000465238 PCYT1BQ9Y5K3 369 aaPredicted RBP17.4■□□□□ 0.38
COL7A1-205ENST00000465238 IGHV5-10-1A0A0J9YXX1 117 aa17.39■□□□□ 0.37
COL7A1-205ENST00000465238 B8ZZF3 427 aa17.39■□□□□ 0.37
COL7A1-205ENST00000465238 C9orf172C9J069 976 aa17.39■□□□□ 0.37
COL7A1-205ENST00000465238 IQCJ-SCHIP1C9J366 451 aaPredicted RBP17.39■□□□□ 0.37
COL7A1-205ENST00000465238 J3QKU1 62 aa17.39■□□□□ 0.37
COL7A1-205ENST00000465238 PPM1DO15297 605 aa17.39■□□□□ 0.37
COL7A1-205ENST00000465238 VAPBO95292 243 aa17.39■□□□□ 0.37
COL7A1-205ENST00000465238 PRSS56P0CW18 603 aa17.39■□□□□ 0.37
COL7A1-205ENST00000465238 ZNF7P17097 686 aaPredicted RBP17.39■□□□□ 0.37
COL7A1-205ENST00000465238 ACRV1P26436 265 aa17.39■□□□□ 0.37
COL7A1-205ENST00000465238 FOXN2P32314 431 aa17.39■□□□□ 0.37
COL7A1-205ENST00000465238 ARL4CP56559 192 aa17.39■□□□□ 0.37
COL7A1-205ENST00000465238 DHX9Q08211 1270 aaKnown RBP17.39■□□□□ 0.37
COL7A1-205ENST00000465238 SQSTM1Q13501 440 aa17.39■□□□□ 0.37
COL7A1-205ENST00000465238 TRA2AQ13595 282 aaKnown RBP eCLIP17.39■□□□□ 0.37
COL7A1-205ENST00000465238 INSCQ1MX18 579 aa17.39■□□□□ 0.37
COL7A1-205ENST00000465238 BBS9Q3SYG4 887 aa17.39■□□□□ 0.37
COL7A1-205ENST00000465238 MANEAQ5SRI9 462 aa17.39■□□□□ 0.37
COL7A1-205ENST00000465238 FNBP1LQ5T0N5 605 aa17.39■□□□□ 0.37
COL7A1-205ENST00000465238 DUPD1Q68J44 220 aa17.39■□□□□ 0.37
COL7A1-205ENST00000465238 TMEM220Q6QAJ8 160 aa17.39■□□□□ 0.37
COL7A1-205ENST00000465238 XKR5Q6UX68 686 aa17.39■□□□□ 0.37
COL7A1-205ENST00000465238 CERS6Q6ZMG9 384 aa17.39■□□□□ 0.37
COL7A1-205ENST00000465238 MICALCLQ6ZW33 695 aa17.39■□□□□ 0.37
COL7A1-205ENST00000465238 DET1Q7L5Y6 550 aa17.39■□□□□ 0.37
COL7A1-205ENST00000465238 ZFAND4Q86XD8 727 aa17.39■□□□□ 0.37
COL7A1-205ENST00000465238 DTX1Q86Y01 620 aa17.39■□□□□ 0.37
COL7A1-205ENST00000465238 PIANPQ8IYJ0 282 aa17.39■□□□□ 0.37
COL7A1-205ENST00000465238 MMGT1Q8N4V1 131 aa17.39■□□□□ 0.37
COL7A1-205ENST00000465238 STAMBPL1Q96FJ0 436 aa17.39■□□□□ 0.37
COL7A1-205ENST00000465238 SGSM3Q96HU1 749 aa17.39■□□□□ 0.37
COL7A1-205ENST00000465238 DPYSL5Q9BPU6 564 aa17.39■□□□□ 0.37
COL7A1-205ENST00000465238 LRRC1Q9BTT6 524 aa17.39■□□□□ 0.37
COL7A1-205ENST00000465238 CATSPERZQ9NTU4 200 aa17.39■□□□□ 0.37
COL7A1-205ENST00000465238 RPS6KL1Q9Y6S9 549 aa17.39■□□□□ 0.37
COL7A1-205ENST00000465238 BOD1L1Q8NFC6 3051 aa17.39■□□□□ 0.37
COL7A1-205ENST00000465238 SPTA1P02549 2419 aa17.38■□□□□ 0.37
COL7A1-205ENST00000465238 OR2AG2A6NM03 316 aa17.38■□□□□ 0.37
COL7A1-205ENST00000465238 CD3EAPO15446 510 aaKnown RBP17.38■□□□□ 0.37
COL7A1-205ENST00000465238 ITGB2P05107 769 aa17.38■□□□□ 0.37
COL7A1-205ENST00000465238 ATP1B2P14415 290 aaPredicted RBP17.38■□□□□ 0.37
COL7A1-205ENST00000465238 VCLP18206 1134 aa17.38■□□□□ 0.37
COL7A1-205ENST00000465238 CTSCP53634 463 aa17.38■□□□□ 0.37
COL7A1-205ENST00000465238 LIMK2P53671 638 aa17.38■□□□□ 0.37
COL7A1-205ENST00000465238 ITIH4Q14624 930 aa17.38■□□□□ 0.37
COL7A1-205ENST00000465238 DBN1Q16643 649 aa17.38■□□□□ 0.37
COL7A1-205ENST00000465238 HIF1AQ16665 826 aa17.38■□□□□ 0.37
COL7A1-205ENST00000465238 PLA2G4EQ3MJ16 856 aa17.38■□□□□ 0.37
COL7A1-205ENST00000465238 ANKRD20A4Q4UJ75 823 aa17.38■□□□□ 0.37
COL7A1-205ENST00000465238 AARS2Q5JTZ9 985 aaKnown RBP17.38■□□□□ 0.37
COL7A1-205ENST00000465238 DNTTIP2Q5QJE6 756 aaKnown RBP17.38■□□□□ 0.37
COL7A1-205ENST00000465238 KIAA0930Q6ICG6 404 aaPredicted RBP17.38■□□□□ 0.37
COL7A1-205ENST00000465238 OTUD6BQ8N6M0 293 aa17.38■□□□□ 0.37
COL7A1-205ENST00000465238 RCBTB1Q8NDN9 531 aa17.38■□□□□ 0.37
COL7A1-205ENST00000465238 OR4D9Q8NGE8 314 aa17.38■□□□□ 0.37
COL7A1-205ENST00000465238 ZNF669Q96BR6 464 aaPredicted RBP17.38■□□□□ 0.37
COL7A1-205ENST00000465238 CCDC74BQ96LY2 380 aa17.38■□□□□ 0.37
COL7A1-205ENST00000465238 TIMM29Q9BSF4 260 aa17.38■□□□□ 0.37
COL7A1-205ENST00000465238 KLC4Q9NSK0 619 aa17.38■□□□□ 0.37
COL7A1-205ENST00000465238 KCNK6Q9Y257 313 aa17.38■□□□□ 0.37
COL7A1-205ENST00000465238 DNMT3AQ9Y6K1 912 aaPredicted RBP17.38■□□□□ 0.37
COL7A1-205ENST00000465238 TLN1Q9Y490 2541 aaKnown RBP17.38■□□□□ 0.37
COL7A1-205ENST00000465238 IGHV1OR21-1A0A087WYE8 117 aa17.37■□□□□ 0.37
COL7A1-205ENST00000465238 KCNJ13O60928 360 aa17.37■□□□□ 0.37
COL7A1-205ENST00000465238 POP7O75817 140 aaKnown RBP17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms