RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 SF3A3Q12874 501 aaKnown RBP eCLIP5.36□□□□□ -1.55
VPS41-209ENST00000457055 MYO1EQ12965 1108 aa5.36□□□□□ -1.55
VPS41-209ENST00000457055 SCGB2A2Q13296 93 aa5.36□□□□□ -1.55
VPS41-209ENST00000457055 ART3Q13508 389 aa5.36□□□□□ -1.55
VPS41-209ENST00000457055 TUBB2AQ13885 445 aa5.36□□□□□ -1.55
VPS41-209ENST00000457055 DGCR6Q14129 220 aa5.36□□□□□ -1.55
VPS41-209ENST00000457055 GAMTQ14353 236 aa5.36□□□□□ -1.55
VPS41-209ENST00000457055 CLCA4Q14CN2 919 aa5.36□□□□□ -1.55
VPS41-209ENST00000457055 TBCCQ15814 346 aa5.36□□□□□ -1.55
VPS41-209ENST00000457055 DECR1Q16698 335 aa5.36□□□□□ -1.55
VPS41-209ENST00000457055 KYAT1Q16773 422 aa5.36□□□□□ -1.55
VPS41-209ENST00000457055 MTHFSDQ2M296 383 aaKnown RBP5.36□□□□□ -1.55
VPS41-209ENST00000457055 CCDC58Q4VC31 144 aa5.36□□□□□ -1.55
VPS41-209ENST00000457055 ZNF311Q5JNZ3 666 aa5.36□□□□□ -1.55
VPS41-209ENST00000457055 PAGE2BQ5JRK9 111 aa5.36□□□□□ -1.55
VPS41-209ENST00000457055 DAB2IPQ5VWQ8 1189 aa5.36□□□□□ -1.55
VPS41-209ENST00000457055 KIAA1841Q6NSI8 718 aa5.36□□□□□ -1.55
VPS41-209ENST00000457055 PSRC1Q6PGN9 363 aaPredicted RBP5.36□□□□□ -1.55
VPS41-209ENST00000457055 CLEC17AQ6ZS10 378 aa5.36□□□□□ -1.55
VPS41-209ENST00000457055 C3orf62Q6ZUJ4 267 aa5.36□□□□□ -1.55
VPS41-209ENST00000457055 H1FNTQ75WM6 255 aaPredicted RBP5.36□□□□□ -1.55
VPS41-209ENST00000457055 CAMKMTQ7Z624 323 aa5.36□□□□□ -1.55
VPS41-209ENST00000457055 CNGA4Q8IV77 575 aa5.36□□□□□ -1.55
VPS41-209ENST00000457055 CCDC36Q8IYA8 594 aa5.36□□□□□ -1.55
VPS41-209ENST00000457055 ELMOD2Q8IZ81 293 aa5.36□□□□□ -1.55
VPS41-209ENST00000457055 D2HGDHQ8N465 521 aa5.36□□□□□ -1.55
VPS41-209ENST00000457055 ZNF781Q8N8C0 355 aa5.36□□□□□ -1.55
VPS41-209ENST00000457055 OR52J3Q8NH60 311 aa5.36□□□□□ -1.55
VPS41-209ENST00000457055 MAGEC3Q8TD91 643 aa5.36□□□□□ -1.55
VPS41-209ENST00000457055 CD300LFQ8TDQ1 290 aa5.36□□□□□ -1.55
VPS41-209ENST00000457055 SLC20A1Q8WUM9 679 aa5.36□□□□□ -1.55
VPS41-209ENST00000457055 ASB15Q8WXK1 588 aa5.36□□□□□ -1.55
VPS41-209ENST00000457055 RAPGEF4Q8WZA2 1011 aa5.36□□□□□ -1.55
VPS41-209ENST00000457055 SMG7Q92540 1137 aaKnown RBP5.36□□□□□ -1.55
VPS41-209ENST00000457055 NCSTNQ92542 709 aa5.36□□□□□ -1.55
VPS41-209ENST00000457055 SLAMF9Q96A28 289 aa5.36□□□□□ -1.55
VPS41-209ENST00000457055 KIAA1143Q96AT1 154 aaPredicted RBP5.36□□□□□ -1.55
VPS41-209ENST00000457055 MRPL38Q96DV4 380 aaKnown RBP5.36□□□□□ -1.55
VPS41-209ENST00000457055 TMEM176AQ96HP8 235 aa5.36□□□□□ -1.55
VPS41-209ENST00000457055 ANKRD36BP1Q96IX9 119 aa5.36□□□□□ -1.55
VPS41-209ENST00000457055 SEMA3CQ99985 751 aa5.36□□□□□ -1.55
VPS41-209ENST00000457055 NAA11Q9BSU3 229 aaPredicted RBP5.36□□□□□ -1.55
VPS41-209ENST00000457055 TUBB2BQ9BVA1 445 aa5.36□□□□□ -1.55
VPS41-209ENST00000457055 KRTAP9-8Q9BYQ0 159 aa5.36□□□□□ -1.55
VPS41-209ENST00000457055 PANK2Q9BZ23 570 aa5.36□□□□□ -1.55
VPS41-209ENST00000457055 TMEM117Q9H0C3 514 aa5.36□□□□□ -1.55
VPS41-209ENST00000457055 SNX25Q9H3E2 840 aa5.36□□□□□ -1.55
VPS41-209ENST00000457055 MUC13Q9H3R2 512 aa5.36□□□□□ -1.55
VPS41-209ENST00000457055 CUEDC2Q9H467 287 aa5.36□□□□□ -1.55
VPS41-209ENST00000457055 ST6GALNAC4Q9H4F1 302 aa5.36□□□□□ -1.55
VPS41-209ENST00000457055 MLXIPQ9HAP2 919 aa5.36□□□□□ -1.55
VPS41-209ENST00000457055 SLC38A10Q9HBR0 1119 aa5.36□□□□□ -1.55
VPS41-209ENST00000457055 AURKAIP1Q9NWT8 199 aaPredicted RBP5.36□□□□□ -1.55
VPS41-209ENST00000457055 TAS2R10Q9NYW0 307 aa5.36□□□□□ -1.55
VPS41-209ENST00000457055 MARCH4Q9P2E8 410 aaPredicted RBP5.36□□□□□ -1.55
VPS41-209ENST00000457055 ARMCX3Q9UH62 379 aaPredicted RBP5.36□□□□□ -1.55
VPS41-209ENST00000457055 VPS51Q9UID3 782 aa5.36□□□□□ -1.55
VPS41-209ENST00000457055 STAP1Q9ULZ2 295 aa5.36□□□□□ -1.55
VPS41-209ENST00000457055 SRPRBQ9Y5M8 271 aaKnown RBP5.36□□□□□ -1.55
VPS41-209ENST00000457055 ACEP12821 1306 aa5.36□□□□□ -1.55
VPS41-209ENST00000457055 INSRP06213 1382 aa5.36□□□□□ -1.55
VPS41-209ENST00000457055 CLTCL1P53675 1640 aa5.36□□□□□ -1.55
VPS41-209ENST00000457055 VIRMAQ69YN4 1812 aaKnown RBP5.36□□□□□ -1.55
VPS41-209ENST00000457055 WNK3Q9BYP7 1800 aa5.36□□□□□ -1.55
VPS41-209ENST00000457055 TULP4Q9NRJ4 1543 aa5.35□□□□□ -1.55
VPS41-209ENST00000457055 SMIM30A4D0T7 59 aa5.35□□□□□ -1.55
VPS41-209ENST00000457055 KBTBD13C9JR72 458 aa5.35□□□□□ -1.55
VPS41-209ENST00000457055 UBE2Q2LH0YL09 131 aa5.35□□□□□ -1.55
VPS41-209ENST00000457055 TNPO2O14787 897 aaKnown RBP5.35□□□□□ -1.55
VPS41-209ENST00000457055 POLR1CO15160 346 aaPredicted RBP5.35□□□□□ -1.55
VPS41-209ENST00000457055 CTIFO43310 598 aaKnown RBP5.35□□□□□ -1.55
VPS41-209ENST00000457055 AKR7A2O43488 359 aa5.35□□□□□ -1.55
VPS41-209ENST00000457055 NDUFS2O75306 463 aa5.35□□□□□ -1.55
VPS41-209ENST00000457055 PSIP1O75475 530 aaKnown RBP5.35□□□□□ -1.55
VPS41-209ENST00000457055 SUPT3HO75486 399 aa5.35□□□□□ -1.55
VPS41-209ENST00000457055 CABYRO75952 493 aa5.35□□□□□ -1.55
VPS41-209ENST00000457055 PDE8BO95263 885 aa5.35□□□□□ -1.55
VPS41-209ENST00000457055 IGHEP01854 428 aa5.35□□□□□ -1.55
VPS41-209ENST00000457055 TUBBP07437 444 aa5.35□□□□□ -1.55
VPS41-209ENST00000457055 KRT19P08727 400 aa5.35□□□□□ -1.55
VPS41-209ENST00000457055 UQCRFS1P1P0C7P4 283 aa5.35□□□□□ -1.55
VPS41-209ENST00000457055 ATP2A2P16615 1042 aaKnown RBP5.35□□□□□ -1.55
VPS41-209ENST00000457055 PTNP21246 168 aa5.35□□□□□ -1.55
VPS41-209ENST00000457055 PTPN6P29350 595 aa5.35□□□□□ -1.55
VPS41-209ENST00000457055 CASP4P49662 377 aa5.35□□□□□ -1.55
VPS41-209ENST00000457055 FHITP49789 147 aa5.35□□□□□ -1.55
VPS41-209ENST00000457055 PRKAA2P54646 552 aa5.35□□□□□ -1.55
VPS41-209ENST00000457055 NAGLUP54802 743 aa5.35□□□□□ -1.55
VPS41-209ENST00000457055 KIAA1024LP59773 190 aa5.35□□□□□ -1.55
VPS41-209ENST00000457055 HNRNPKP61978 463 aaKnown RBP eCLIP5.35□□□□□ -1.55
VPS41-209ENST00000457055 TUBB4BP68371 445 aa5.35□□□□□ -1.55
VPS41-209ENST00000457055 HGFACQ04756 655 aa5.35□□□□□ -1.55
VPS41-209ENST00000457055 ZNF33BQ06732 778 aa5.35□□□□□ -1.55
VPS41-209ENST00000457055 ILF2Q12905 390 aaKnown RBP5.35□□□□□ -1.55
VPS41-209ENST00000457055 STX5Q13190 355 aa5.35□□□□□ -1.55
VPS41-209ENST00000457055 SRSF5Q13243 272 aaKnown RBP5.35□□□□□ -1.55
VPS41-209ENST00000457055 PMS2P3Q13401 168 aa5.35□□□□□ -1.55
VPS41-209ENST00000457055 DRP2Q13474 957 aa5.35□□□□□ -1.55
VPS41-209ENST00000457055 DCTN2Q13561 401 aaKnown RBP5.35□□□□□ -1.55
VPS41-209ENST00000457055 RRP1BQ14684 758 aaKnown RBP5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms