RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 TULP3O75386 442 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 SIX3O95343 332 aaPredicted RBP7.29□□□□□ -1.24
SYNE1-213ENST00000448038 CHRNGP07510 517 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 ANXA6P08133 673 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 SRPRAP08240 638 aaKnown RBP7.29□□□□□ -1.24
SYNE1-213ENST00000448038 NR2F1P10589 423 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 ASMTP46597 345 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 RXRGP48443 463 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 CLCNKAP51800 687 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 ADAM17P78536 824 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 ELAVL3Q14576 367 aaKnown RBP7.29□□□□□ -1.24
SYNE1-213ENST00000448038 TMEM154Q6P9G4 183 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 RELL1Q8IUW5 271 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 DSELQ8IZU8 1212 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 EEF1AKMT1Q8WVE0 214 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 DLG3Q92796 817 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 KLF16Q9BXK1 252 aaPredicted RBP7.29□□□□□ -1.24
SYNE1-213ENST00000448038 CEP44Q9C0F1 390 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 KRT84Q9NSB2 600 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 OXSMQ9NWU1 459 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 CDH7Q9ULB5 785 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 ZNF232Q9UNY5 417 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 PCDHGA11Q9Y5H2 935 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 ANXA4P09525 319 aaPredicted RBP7.29□□□□□ -1.24
SYNE1-213ENST00000448038 IMPDH1P20839 514 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 KIR3DL1P43629 444 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 DHPSP49366 369 aaPredicted RBP7.29□□□□□ -1.24
SYNE1-213ENST00000448038 CCR4P51679 360 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 POLR2JP52435 117 aaKnown RBP7.29□□□□□ -1.24
SYNE1-213ENST00000448038 KCNJ2P63252 427 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 C2orf80Q0P641 193 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 TJAP1Q5JTD0 557 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 C16orf62Q7Z3J2 963 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 DHDDSQ86SQ9 333 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 FAM129CQ86XR2 697 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 NXPE1Q8N323 547 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 ZNF276Q8N554 614 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 OR4A15Q8NGL6 344 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 TRMT2BQ96GJ1 504 aaKnown RBP7.29□□□□□ -1.24
SYNE1-213ENST00000448038 FCRL3Q96P31 734 aaPredicted RBP7.29□□□□□ -1.24
SYNE1-213ENST00000448038 TSC22D3Q99576 134 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 TDRD1Q9BXT4 1180 aaKnown RBP7.29□□□□□ -1.24
SYNE1-213ENST00000448038 SLC46A2Q9BY10 475 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 TMEM98Q9Y2Y6 226 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 HIDE1A8MVS5 230 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 CTGFP29279 349 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 FOXN2P32314 431 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 SLC7A2P52569 658 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 PNLIPRP1P54315 467 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 ERVFC1P60507 584 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 GSTA3Q16772 222 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 GPAT3Q53EU6 434 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 IRGCQ6NXR0 463 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 TRIM40Q6P9F5 258 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 SLC30A9Q6PML9 568 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 TMEM173Q86WV6 379 aaPredicted RBP7.29□□□□□ -1.24
SYNE1-213ENST00000448038 AADATQ8N5Z0 425 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 CPSF7Q8N684 471 aaKnown RBP7.29□□□□□ -1.24
SYNE1-213ENST00000448038 SCAMP4Q969E2 229 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 TCEAL4Q96EI5 215 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 RTKNQ9BST9 563 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 RAB11FIP5Q9BXF6 653 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 OSER1Q9NX31 292 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 HSFX1Q9UBD0 423 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 OR10H1Q9Y4A9 318 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 A0A1W2PP55 124 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 BBIP1A8MTZ0 92 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 CDC7O00311 574 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 NRG1Q02297 640 aaPredicted RBP7.29□□□□□ -1.24
SYNE1-213ENST00000448038 MIPEPQ99797 713 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 ITM2CQ9NQX7 267 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 ANGPT4Q9Y264 503 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 CFAP20Q9Y6A4 193 aaKnown RBP7.29□□□□□ -1.24
SYNE1-213ENST00000448038 A8MT66 165 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 H3BQ06 376 aaPredicted RBP7.29□□□□□ -1.24
SYNE1-213ENST00000448038 NDUFB5O43674 189 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 PAK4O96013 591 aaPredicted RBP7.29□□□□□ -1.24
SYNE1-213ENST00000448038 TNFP01375 233 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 SLC35G6P0C7Q6 338 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 CBSLP0DN79 551 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 ATP6V1B1P15313 513 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 CBSP35520 551 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 ETV3P41162 512 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 HNMTP50135 292 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 NFATC2Q13469 925 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 AAK1Q2M2I8 961 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 ATP13A5Q4VNC0 1218 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 CCDC81Q6ZN84 652 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 NET1Q7Z628 596 aaPredicted RBP7.29□□□□□ -1.24
SYNE1-213ENST00000448038 UTP15Q8TED0 518 aaKnown RBP7.29□□□□□ -1.24
SYNE1-213ENST00000448038 RAB7BQ96AH8 199 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 TTLL2Q9BWV7 592 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 RNF38Q9H0F5 515 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 SEMA6AQ9H2E6 1030 aa7.29□□□□□ -1.24
SYNE1-213ENST00000448038 SCHIP1Q9P0W5 487 aaPredicted RBP7.29□□□□□ -1.24
SYNE1-213ENST00000448038 E7ESA3 106 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 HS6ST1O60243 411 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 CFIP05156 583 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 RPL10P27635 214 aaKnown RBP7.28□□□□□ -1.24
SYNE1-213ENST00000448038 IDH3AP50213 366 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms