RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 NOL6Q9H6R4 1146 aaKnown RBP11.7□□□□□ -0.54
MSH6-204ENST00000445503 GMPPBQ9Y5P6 360 aa11.7□□□□□ -0.54
MSH6-204ENST00000445503 BRWD3Q6RI45 1802 aa11.7□□□□□ -0.54
MSH6-204ENST00000445503 DOCK1Q14185 1865 aa11.7□□□□□ -0.54
MSH6-204ENST00000445503 LOC100506127A0A0U1RQW1 187 aa11.7□□□□□ -0.54
MSH6-204ENST00000445503 MGEA5O60502 916 aa11.7□□□□□ -0.54
MSH6-204ENST00000445503 SERPINA1P01009 418 aa11.7□□□□□ -0.54
MSH6-204ENST00000445503 MBL2P11226 248 aaPredicted RBP11.7□□□□□ -0.54
MSH6-204ENST00000445503 EPB42P16452 691 aa11.7□□□□□ -0.54
MSH6-204ENST00000445503 CYP4F3Q08477 520 aa11.7□□□□□ -0.54
MSH6-204ENST00000445503 GALNT1Q10472 559 aaPredicted RBP11.7□□□□□ -0.54
MSH6-204ENST00000445503 SELPLGQ14242 412 aa11.7□□□□□ -0.54
MSH6-204ENST00000445503 XKR4Q5GH76 650 aa11.7□□□□□ -0.54
MSH6-204ENST00000445503 TBPL2Q6SJ96 375 aa11.7□□□□□ -0.54
MSH6-204ENST00000445503 ITIH5Q86UX2 942 aa11.7□□□□□ -0.54
MSH6-204ENST00000445503 DTWD1Q8N5C7 304 aa11.7□□□□□ -0.54
MSH6-204ENST00000445503 ELMO1Q92556 727 aa11.7□□□□□ -0.54
MSH6-204ENST00000445503 NSMCE3Q96MG7 304 aa11.7□□□□□ -0.54
MSH6-204ENST00000445503 BIRC8Q96P09 236 aa11.7□□□□□ -0.54
MSH6-204ENST00000445503 ATOH8Q96SQ7 321 aa11.7□□□□□ -0.54
MSH6-204ENST00000445503 NUSAP1Q9BXS6 441 aaKnown RBP11.7□□□□□ -0.54
MSH6-204ENST00000445503 KATNBL1Q9H079 304 aa11.7□□□□□ -0.54
MSH6-204ENST00000445503 AMBNQ9NP70 447 aa11.7□□□□□ -0.54
MSH6-204ENST00000445503 TUBA8Q9NY65 449 aaPredicted RBP11.7□□□□□ -0.54
MSH6-204ENST00000445503 FCF1Q9Y324 198 aaKnown RBP11.7□□□□□ -0.54
MSH6-204ENST00000445503 GPR45Q9Y5Y3 372 aa11.7□□□□□ -0.54
MSH6-204ENST00000445503 A0A0U1RQF3 1178 aa11.7□□□□□ -0.54
MSH6-204ENST00000445503 ANGPTL1O95841 491 aa11.7□□□□□ -0.54
MSH6-204ENST00000445503 ASGR1P07306 291 aa11.7□□□□□ -0.54
MSH6-204ENST00000445503 GNPDA1P46926 289 aa11.7□□□□□ -0.54
MSH6-204ENST00000445503 ALDH3A2P51648 485 aa11.7□□□□□ -0.54
MSH6-204ENST00000445503 BMXP51813 675 aa11.7□□□□□ -0.54
MSH6-204ENST00000445503 KCNAB2Q13303 367 aa11.7□□□□□ -0.54
MSH6-204ENST00000445503 AAK1Q2M2I8 961 aa11.7□□□□□ -0.54
MSH6-204ENST00000445503 SULT1C3Q6IMI6 304 aa11.7□□□□□ -0.54
MSH6-204ENST00000445503 ZNF773Q6PK81 442 aa11.7□□□□□ -0.54
MSH6-204ENST00000445503 KIAA2013Q8IYS2 634 aa11.7□□□□□ -0.54
MSH6-204ENST00000445503 SLC15A4Q8N697 577 aa11.7□□□□□ -0.54
MSH6-204ENST00000445503 ARRDC2Q8TBH0 407 aa11.7□□□□□ -0.54
MSH6-204ENST00000445503 MCOLN3Q8TDD5 553 aa11.7□□□□□ -0.54
MSH6-204ENST00000445503 CEP19Q96LK0 163 aa11.7□□□□□ -0.54
MSH6-204ENST00000445503 RMND5AQ9H871 391 aa11.7□□□□□ -0.54
MSH6-204ENST00000445503 LRTM1Q9HBL6 345 aa11.7□□□□□ -0.54
MSH6-204ENST00000445503 EXOSC4Q9NPD3 245 aaKnown RBP11.7□□□□□ -0.54
MSH6-204ENST00000445503 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP11.7□□□□□ -0.549e-8■■■■□ 21.9
MSH6-204ENST00000445503 ATP11BQ9Y2G3 1177 aa11.7□□□□□ -0.54
MSH6-204ENST00000445503 BCKDKO14874 412 aa11.69□□□□□ -0.54
MSH6-204ENST00000445503 CD247P20963 164 aa11.69□□□□□ -0.54
MSH6-204ENST00000445503 ERVPABLB-1P60509 514 aa11.69□□□□□ -0.54
MSH6-204ENST00000445503 NFATC3Q12968 1075 aa11.69□□□□□ -0.54
MSH6-204ENST00000445503 GTDC1Q4AE62 458 aa11.69□□□□□ -0.54
MSH6-204ENST00000445503 ARMC12Q5T9G4 340 aa11.69□□□□□ -0.54
MSH6-204ENST00000445503 PAGE2Q7Z2X7 111 aa11.69□□□□□ -0.54
MSH6-204ENST00000445503 KRTCAP2Q8N6L1 136 aa11.69□□□□□ -0.54
MSH6-204ENST00000445503 LEMD2Q8NC56 503 aa11.69□□□□□ -0.54
MSH6-204ENST00000445503 KLHDC9Q8NEP7 349 aa11.69□□□□□ -0.54
MSH6-204ENST00000445503 SPPL2AQ8TCT8 520 aa11.69□□□□□ -0.54
MSH6-204ENST00000445503 RMI1Q9H9A7 625 aa11.69□□□□□ -0.54
MSH6-204ENST00000445503 PRDM5Q9NQX1 630 aaPredicted RBP11.69□□□□□ -0.54
MSH6-204ENST00000445503 DNMT3LQ9UJW3 386 aa11.69□□□□□ -0.54
MSH6-204ENST00000445503 PSME2Q9UL46 239 aa11.69□□□□□ -0.54
MSH6-204ENST00000445503 VPS4AQ9UN37 437 aa11.69□□□□□ -0.54
MSH6-204ENST00000445503 PCDHB8Q9UN66 801 aa11.69□□□□□ -0.54
MSH6-204ENST00000445503 PRAMEF11O60813 436 aa11.69□□□□□ -0.54
MSH6-204ENST00000445503 FGF4P08620 206 aa11.69□□□□□ -0.54
MSH6-204ENST00000445503 TRPC1P48995 793 aa11.69□□□□□ -0.54
MSH6-204ENST00000445503 NEK2P51955 445 aa11.69□□□□□ -0.54
MSH6-204ENST00000445503 GOLGA7Q7Z5G4 137 aa11.69□□□□□ -0.54
MSH6-204ENST00000445503 SNX29P2Q8IUI4 249 aa11.69□□□□□ -0.54
MSH6-204ENST00000445503 TMEM132CQ8N3T6 1108 aa11.69□□□□□ -0.54
MSH6-204ENST00000445503 MFSD2AQ8NA29 543 aa11.69□□□□□ -0.54
MSH6-204ENST00000445503 UTP15Q8TED0 518 aaKnown RBP11.69□□□□□ -0.54
MSH6-204ENST00000445503 RAB2BQ8WUD1 216 aa11.69□□□□□ -0.54
MSH6-204ENST00000445503 HPS1Q92902 700 aa11.69□□□□□ -0.54
MSH6-204ENST00000445503 ITFG2Q969R8 447 aa11.69□□□□□ -0.54
MSH6-204ENST00000445503 APOLD1Q96LR9 279 aa11.69□□□□□ -0.54
MSH6-204ENST00000445503 LHPPQ9H008 270 aa11.69□□□□□ -0.54
MSH6-204ENST00000445503 MUC13Q9H3R2 512 aa11.69□□□□□ -0.54
MSH6-204ENST00000445503 SCML2Q9UQR0 700 aa11.69□□□□□ -0.54
MSH6-204ENST00000445503 OAS3Q9Y6K5 1087 aaKnown RBP11.69□□□□□ -0.54
MSH6-204ENST00000445503 FFAR2O15552 330 aa11.69□□□□□ -0.54
MSH6-204ENST00000445503 ATXN1LP0C7T5 689 aaKnown RBP11.69□□□□□ -0.54
MSH6-204ENST00000445503 ZNF865P0CJ78 1059 aaPredicted RBP11.69□□□□□ -0.54
MSH6-204ENST00000445503 MATN1P21941 496 aa11.69□□□□□ -0.54
MSH6-204ENST00000445503 SEPHS1P49903 392 aa11.69□□□□□ -0.54
MSH6-204ENST00000445503 CYP4F2P78329 520 aa11.69□□□□□ -0.54
MSH6-204ENST00000445503 TTLL9Q3SXZ7 439 aa11.69□□□□□ -0.54
MSH6-204ENST00000445503 RFTN2Q52LD8 501 aaPredicted RBP11.69□□□□□ -0.54
MSH6-204ENST00000445503 LETMD1Q6P1Q0 360 aa11.69□□□□□ -0.54
MSH6-204ENST00000445503 LYSMD3Q7Z3D4 306 aa11.69□□□□□ -0.54
MSH6-204ENST00000445503 RHEBL1Q8TAI7 183 aa11.69□□□□□ -0.54
MSH6-204ENST00000445503 PYCR2Q96C36 320 aa11.69□□□□□ -0.54
MSH6-204ENST00000445503 RERGLQ9H628 205 aa11.69□□□□□ -0.54
MSH6-204ENST00000445503 TRPM5Q9NZQ8 1165 aa11.69□□□□□ -0.54
MSH6-204ENST00000445503 TPRKBQ9Y3C4 175 aa11.69□□□□□ -0.54
MSH6-204ENST00000445503 PCDHB7Q9Y5E2 793 aa11.69□□□□□ -0.54
MSH6-204ENST00000445503 PCDHB3Q9Y5E6 796 aa11.69□□□□□ -0.54
MSH6-204ENST00000445503 UPK3BL1B0FP48 263 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 UPK3BL2E5RIL1 263 aa11.68□□□□□ -0.54
MSH6-204ENST00000445503 RFXANKO14593 260 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms