RNA–Protein interactions for RNA: ENST00000444951.5

LIME1-202, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3

Gene LIME1, Length 451 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-202ENST00000444951 RBBP8Q99708 897 aa16.92■□□□□ 0.3
LIME1-202ENST00000444951 TMEM168Q9H0V1 697 aa16.92■□□□□ 0.3
LIME1-202ENST00000444951 CCDC86Q9H6F5 360 aaKnown RBP16.92■□□□□ 0.3
LIME1-202ENST00000444951 RMI1Q9H9A7 625 aa16.92■□□□□ 0.3
LIME1-202ENST00000444951 APOBEC3BQ9UH17 382 aaKnown RBP16.92■□□□□ 0.3
LIME1-202ENST00000444951 KCNK6Q9Y257 313 aa16.92■□□□□ 0.3
LIME1-202ENST00000444951 PLAAQ9Y263 795 aa16.92■□□□□ 0.3
LIME1-202ENST00000444951 MTO1Q9Y2Z2 717 aaKnown RBP16.92■□□□□ 0.3
LIME1-202ENST00000444951 PCDHB1Q9Y5F3 818 aa16.92■□□□□ 0.3
LIME1-202ENST00000444951 KNTC1P50748 2209 aa16.92■□□□□ 0.3
LIME1-202ENST00000444951 TLDC2A0PJX2 215 aa16.91■□□□□ 0.3
LIME1-202ENST00000444951 GPR89AB7ZAQ6 455 aa16.91■□□□□ 0.3
LIME1-202ENST00000444951 E5RI56 91 aa16.91■□□□□ 0.3
LIME1-202ENST00000444951 CHUKO15111 745 aa16.91■□□□□ 0.3
LIME1-202ENST00000444951 TNFSF14O43557 240 aa16.91■□□□□ 0.3
LIME1-202ENST00000444951 FTH1P02794 183 aa16.91■□□□□ 0.3
LIME1-202ENST00000444951 ESR1P03372 595 aa16.91■□□□□ 0.3
LIME1-202ENST00000444951 CSF2P04141 144 aa16.91■□□□□ 0.3
LIME1-202ENST00000444951 GPR89BP0CG08 455 aa16.91■□□□□ 0.3
LIME1-202ENST00000444951 SPRP35270 261 aaPredicted RBP16.91■□□□□ 0.3
LIME1-202ENST00000444951 PRLHRP49683 370 aa16.91■□□□□ 0.3
LIME1-202ENST00000444951 BLKP51451 505 aa16.91■□□□□ 0.3
LIME1-202ENST00000444951 PGGT1BP53609 377 aa16.91■□□□□ 0.3
LIME1-202ENST00000444951 CAMK2BQ13554 666 aa16.91■□□□□ 0.3
LIME1-202ENST00000444951 BCL7AQ4VC05 210 aa16.91■□□□□ 0.3
LIME1-202ENST00000444951 PRRT3Q5FWE3 981 aa16.91■□□□□ 0.3
LIME1-202ENST00000444951 ACVR1CQ8NER5 493 aa16.91■□□□□ 0.3
LIME1-202ENST00000444951 CCL4L1Q8NHW4 92 aa16.91■□□□□ 0.3
LIME1-202ENST00000444951 LMX1AQ8TE12 382 aa16.91■□□□□ 0.3
LIME1-202ENST00000444951 EPS8L3Q8TE67 593 aaKnown RBP16.91■□□□□ 0.3
LIME1-202ENST00000444951 HNRNPLLQ8WVV9 542 aaKnown RBP16.91■□□□□ 0.3
LIME1-202ENST00000444951 SLC44A1Q8WWI5 657 aa16.91■□□□□ 0.3
LIME1-202ENST00000444951 SCG3Q8WXD2 468 aaKnown RBP16.91■□□□□ 0.3
LIME1-202ENST00000444951 ELMO1Q92556 727 aa16.91■□□□□ 0.3
LIME1-202ENST00000444951 SCARF2Q96GP6 870 aaPredicted RBP16.91■□□□□ 0.3
LIME1-202ENST00000444951 VPS39Q96JC1 886 aa16.91■□□□□ 0.3
LIME1-202ENST00000444951 ELF4Q99607 663 aaPredicted RBP16.91■□□□□ 0.3
LIME1-202ENST00000444951 CCM2Q9BSQ5 444 aa16.91■□□□□ 0.3
LIME1-202ENST00000444951 AARSD1Q9BTE6 412 aaKnown RBP16.91■□□□□ 0.3
LIME1-202ENST00000444951 OSGEPL1Q9H4B0 414 aa16.91■□□□□ 0.3
LIME1-202ENST00000444951 RHOJQ9H4E5 214 aa16.91■□□□□ 0.3
LIME1-202ENST00000444951 KLC4Q9NSK0 619 aa16.91■□□□□ 0.3
LIME1-202ENST00000444951 SLC23A2Q9UGH3 650 aa16.91■□□□□ 0.3
LIME1-202ENST00000444951 TSR3Q9UJK0 312 aaKnown RBP16.91■□□□□ 0.3
LIME1-202ENST00000444951 SLC39A10Q9ULF5 831 aa16.91■□□□□ 0.3
LIME1-202ENST00000444951 GPR34Q9UPC5 381 aa16.91■□□□□ 0.3
LIME1-202ENST00000444951 RAXQ9Y2V3 346 aa16.91■□□□□ 0.3
LIME1-202ENST00000444951 DGKBQ9Y6T7 804 aa16.91■□□□□ 0.3
LIME1-202ENST00000444951 BAHCC1Q9P281 2608 aa16.91■□□□□ 0.3
LIME1-202ENST00000444951 COL5A1P20908 1838 aaPredicted RBP16.91■□□□□ 0.3
LIME1-202ENST00000444951 FAM95CA0A1B0GW59 222 aa16.9■□□□□ 0.3
LIME1-202ENST00000444951 F8W8V4 182 aa16.9■□□□□ 0.3
LIME1-202ENST00000444951 H3BM21 787 aa16.9■□□□□ 0.3
LIME1-202ENST00000444951 CELA2BP08218 269 aaPredicted RBP16.9■□□□□ 0.3
LIME1-202ENST00000444951 NME1P15531 152 aaKnown RBP16.9■□□□□ 0.3
LIME1-202ENST00000444951 H2AFXP16104 143 aaPredicted RBP16.9■□□□□ 0.3
LIME1-202ENST00000444951 AK4P27144 223 aaPredicted RBP16.9■□□□□ 0.3
LIME1-202ENST00000444951 CTBSQ01459 385 aa16.9■□□□□ 0.3
LIME1-202ENST00000444951 BOP1Q14137 746 aaKnown RBP16.9■□□□□ 0.3
LIME1-202ENST00000444951 SYTL3Q4VX76 610 aa16.9■□□□□ 0.3
LIME1-202ENST00000444951 MROH9Q5TGP6 573 aa16.9■□□□□ 0.3
LIME1-202ENST00000444951 HECTD2Q5U5R9 776 aa16.9■□□□□ 0.3
LIME1-202ENST00000444951 DHRS13Q6UX07 377 aa16.9■□□□□ 0.3
LIME1-202ENST00000444951 GALNT7Q86SF2 657 aa16.9■□□□□ 0.3
LIME1-202ENST00000444951 AMZ2Q86W34 360 aa16.9■□□□□ 0.3
LIME1-202ENST00000444951 DCAKDQ8WVC6 231 aa16.9■□□□□ 0.3
LIME1-202ENST00000444951 TSSK1BQ9BXA7 367 aa16.9■□□□□ 0.3
LIME1-202ENST00000444951 CAB39LQ9H9S4 337 aa16.9■□□□□ 0.3
LIME1-202ENST00000444951 GALPQ9UBC7 116 aa16.9■□□□□ 0.3
LIME1-202ENST00000444951 TBK1Q9UHD2 729 aa16.9■□□□□ 0.3
LIME1-202ENST00000444951 URB1O60287 2271 aaKnown RBP16.9■□□□□ 0.3
LIME1-202ENST00000444951 H3BMM5 538 aa16.89■□□□□ 0.29
LIME1-202ENST00000444951 QSOX1O00391 747 aa16.89■□□□□ 0.29
LIME1-202ENST00000444951 SNX2O60749 519 aa16.89■□□□□ 0.29
LIME1-202ENST00000444951 VPS26AO75436 327 aa16.89■□□□□ 0.29
LIME1-202ENST00000444951 ITGA2BP08514 1039 aa16.89■□□□□ 0.29
LIME1-202ENST00000444951 GCAP28676 217 aa16.89■□□□□ 0.29
LIME1-202ENST00000444951 ARRB1P49407 418 aaPredicted RBP16.89■□□□□ 0.29
LIME1-202ENST00000444951 LIMK2P53671 638 aa16.89■□□□□ 0.29
LIME1-202ENST00000444951 ADARP55265 1226 aaKnown RBP16.89■□□□□ 0.29
LIME1-202ENST00000444951 CDKN2DP55273 166 aa16.89■□□□□ 0.29
LIME1-202ENST00000444951 HNRNPKP61978 463 aaKnown RBP eCLIP16.89■□□□□ 0.29
LIME1-202ENST00000444951 ILF3Q12906 894 aaKnown RBP eCLIP16.89■□□□□ 0.29
LIME1-202ENST00000444951 BNIP3Q12983 259 aa16.89■□□□□ 0.29
LIME1-202ENST00000444951 DNAJC3Q13217 504 aa16.89■□□□□ 0.29
LIME1-202ENST00000444951 NFE2L1Q14494 772 aa16.89■□□□□ 0.29
LIME1-202ENST00000444951 SEPT7Q16181 437 aaKnown RBP16.89■□□□□ 0.29
LIME1-202ENST00000444951 SLC30A9Q6PML9 568 aa16.89■□□□□ 0.29
LIME1-202ENST00000444951 TAF8Q7Z7C8 310 aa16.89■□□□□ 0.29
LIME1-202ENST00000444951 C11orf96Q7Z7L8 435 aa16.89■□□□□ 0.29
LIME1-202ENST00000444951 PIM3Q86V86 326 aa16.89■□□□□ 0.29
LIME1-202ENST00000444951 CFAP206Q8IYR0 622 aa16.89■□□□□ 0.29
LIME1-202ENST00000444951 LILRA3Q8N6C8 439 aaPredicted RBP16.89■□□□□ 0.29
LIME1-202ENST00000444951 SIDT2Q8NBJ9 832 aaKnown RBP16.89■□□□□ 0.29
LIME1-202ENST00000444951 SAP25Q8TEE9 199 aa16.89■□□□□ 0.29
LIME1-202ENST00000444951 PANX3Q96QZ0 392 aa16.89■□□□□ 0.29
LIME1-202ENST00000444951 GPR21Q99679 349 aa16.89■□□□□ 0.29
LIME1-202ENST00000444951 LRRC61Q9BV99 259 aa16.89■□□□□ 0.29
LIME1-202ENST00000444951 ERVMER34-1Q9H9K5 563 aa16.89■□□□□ 0.29
LIME1-202ENST00000444951 CTNNAL1Q9UBT7 734 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms