RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 GALPQ9UBC7 116 aa12.18□□□□□ -0.46
USP40-205ENST00000430158 FTSJ1Q9UET6 329 aa12.18□□□□□ -0.46
USP40-205ENST00000430158 DNAJC16Q9Y2G8 782 aa12.18□□□□□ -0.46
USP40-205ENST00000430158 SPAARA0A1B0GVQ0 90 aa12.17□□□□□ -0.46
USP40-205ENST00000430158 QSOX1O00391 747 aa12.17□□□□□ -0.46
USP40-205ENST00000430158 CASC3O15234 703 aaKnown RBP12.17□□□□□ -0.46
USP40-205ENST00000430158 PPM1DO15297 605 aa12.17□□□□□ -0.46
USP40-205ENST00000430158 PIAS1O75925 651 aa12.17□□□□□ -0.46
USP40-205ENST00000430158 ESR1P03372 595 aa12.17□□□□□ -0.46
USP40-205ENST00000430158 FAM153BP0C7A2 387 aa12.17□□□□□ -0.46
USP40-205ENST00000430158 XRCC1P18887 633 aaPredicted RBP12.17□□□□□ -0.46
USP40-205ENST00000430158 IDSP22304 550 aa12.17□□□□□ -0.46
USP40-205ENST00000430158 AOAHP28039 575 aa12.17□□□□□ -0.46
USP40-205ENST00000430158 PDHA2P29803 388 aa12.17□□□□□ -0.46
USP40-205ENST00000430158 FMO4P31512 558 aa12.17□□□□□ -0.46
USP40-205ENST00000430158 SLC19A1P41440 591 aa12.17□□□□□ -0.46
USP40-205ENST00000430158 FASLGP48023 281 aa12.17□□□□□ -0.46
USP40-205ENST00000430158 NOVA1P51513 510 aaKnown RBP12.17□□□□□ -0.46
USP40-205ENST00000430158 MAZP56270 477 aaKnown RBP12.17□□□□□ -0.46
USP40-205ENST00000430158 MGAT5Q09328 741 aa12.17□□□□□ -0.46
USP40-205ENST00000430158 PUM1Q14671 1186 aaKnown RBP eCLIP12.17□□□□□ -0.46
USP40-205ENST00000430158 NR1D2Q14995 579 aa12.17□□□□□ -0.46
USP40-205ENST00000430158 KYNUQ16719 465 aa12.17□□□□□ -0.46
USP40-205ENST00000430158 FAM153CQ494X1 144 aa12.17□□□□□ -0.46
USP40-205ENST00000430158 C14orf28Q4W4Y0 310 aa12.17□□□□□ -0.46
USP40-205ENST00000430158 PERM1Q5SV97 790 aa12.17□□□□□ -0.46
USP40-205ENST00000430158 GUSBP11Q6P575 273 aa12.17□□□□□ -0.46
USP40-205ENST00000430158 C3orf62Q6ZUJ4 267 aa12.17□□□□□ -0.46
USP40-205ENST00000430158 CCDC25Q86WR0 208 aa12.17□□□□□ -0.46
USP40-205ENST00000430158 KRT222Q8N1A0 295 aa12.17□□□□□ -0.46
USP40-205ENST00000430158 SLC37A2Q8TED4 501 aa12.17□□□□□ -0.46
USP40-205ENST00000430158 RMDN2Q96LZ7 410 aa12.17□□□□□ -0.46
USP40-205ENST00000430158 EPB41L4BQ9H329 900 aa12.17□□□□□ -0.46
USP40-205ENST00000430158 COG4Q9H9E3 785 aa12.17□□□□□ -0.46
USP40-205ENST00000430158 SIRPGQ9P1W8 387 aa12.17□□□□□ -0.46
USP40-205ENST00000430158 RABGEF1Q9UJ41 708 aa12.17□□□□□ -0.46
USP40-205ENST00000430158 ACSL5Q9ULC5 683 aa12.17□□□□□ -0.46
USP40-205ENST00000430158 PADI4Q9UM07 663 aa12.17□□□□□ -0.46
USP40-205ENST00000430158 DOLKQ9UPQ8 538 aa12.17□□□□□ -0.46
USP40-205ENST00000430158 CRYL1Q9Y2S2 319 aa12.17□□□□□ -0.46
USP40-205ENST00000430158 KIR2DS5A0A0G2JLQ3 304 aa12.16□□□□□ -0.46
USP40-205ENST00000430158 PRAMEF33A0A0G2JMD5 474 aa12.16□□□□□ -0.46
USP40-205ENST00000430158 A0A0G2JNG1 304 aa12.16□□□□□ -0.46
USP40-205ENST00000430158 B4DGG1 531 aa12.16□□□□□ -0.46
USP40-205ENST00000430158 KIR2DS3K7RE56 304 aa12.16□□□□□ -0.46
USP40-205ENST00000430158 NUDT21O43809 227 aaKnown RBP12.16□□□□□ -0.46
USP40-205ENST00000430158 SNX2O60749 519 aa12.16□□□□□ -0.46
USP40-205ENST00000430158 NIPSNAP2O75323 286 aa12.16□□□□□ -0.46
USP40-205ENST00000430158 SLCO2B1O94956 709 aa12.16□□□□□ -0.46
USP40-205ENST00000430158 FTH1P02794 183 aa12.16□□□□□ -0.46
USP40-205ENST00000430158 OR56A5P0C7T3 313 aa12.16□□□□□ -0.46
USP40-205ENST00000430158 PKMP14618 531 aaKnown RBP12.16□□□□□ -0.46
USP40-205ENST00000430158 RPL10P27635 214 aaKnown RBP12.16□□□□□ -0.46
USP40-205ENST00000430158 ACADLP28330 430 aa12.16□□□□□ -0.46
USP40-205ENST00000430158 PBLDP30039 288 aaPredicted RBP12.16□□□□□ -0.46
USP40-205ENST00000430158 PREPP48147 710 aa12.16□□□□□ -0.46
USP40-205ENST00000430158 CLCN7P51798 805 aa12.16□□□□□ -0.46
USP40-205ENST00000430158 EIF3BP55884 814 aaKnown RBP12.16□□□□□ -0.46
USP40-205ENST00000430158 RPA4Q13156 261 aa12.16□□□□□ -0.46
USP40-205ENST00000430158 KIR2DS5Q14953 304 aa12.16□□□□□ -0.46
USP40-205ENST00000430158 NR0B2Q15466 257 aa12.16□□□□□ -0.46
USP40-205ENST00000430158 RPE65Q16518 533 aa12.16□□□□□ -0.46
USP40-205ENST00000430158 NAPRTQ6XQN6 538 aa12.16□□□□□ -0.46
USP40-205ENST00000430158 CCNI2Q6ZMN8 369 aaPredicted RBP12.16□□□□□ -0.46
USP40-205ENST00000430158 CAPN12Q6ZSI9 719 aa12.16□□□□□ -0.46
USP40-205ENST00000430158 VRK3Q8IV63 474 aa12.16□□□□□ -0.46
USP40-205ENST00000430158 PALM2Q8IXS6 379 aa12.16□□□□□ -0.46
USP40-205ENST00000430158 CFAP206Q8IYR0 622 aa12.16□□□□□ -0.46
USP40-205ENST00000430158 OTUD6BQ8N6M0 293 aa12.16□□□□□ -0.46
USP40-205ENST00000430158 ACVR1CQ8NER5 493 aa12.16□□□□□ -0.46
USP40-205ENST00000430158 GIMAP7Q8NHV1 300 aa12.16□□□□□ -0.46
USP40-205ENST00000430158 INSM2Q96T92 566 aaPredicted RBP12.16□□□□□ -0.46
USP40-205ENST00000430158 SLC30A3Q99726 388 aa12.16□□□□□ -0.46
USP40-205ENST00000430158 TSPYL1Q9H0U9 437 aa12.16□□□□□ -0.46
USP40-205ENST00000430158 CDC42EP4Q9H3Q1 356 aaKnown RBP12.16□□□□□ -0.46
USP40-205ENST00000430158 SLC32A1Q9H598 525 aa12.16□□□□□ -0.46
USP40-205ENST00000430158 SARS2Q9NP81 518 aaKnown RBP12.16□□□□□ -0.46
USP40-205ENST00000430158 NCKIPSDQ9NZQ3 722 aa12.16□□□□□ -0.46
USP40-205ENST00000430158 MTRF1LQ9UGC7 380 aaKnown RBP12.16□□□□□ -0.46
USP40-205ENST00000430158 GNPTGQ9UJJ9 305 aa12.16□□□□□ -0.46
USP40-205ENST00000430158 PCDHB1Q9Y5F3 818 aa12.16□□□□□ -0.46
USP40-205ENST00000430158 PCDHGA1Q9Y5H4 931 aa12.16□□□□□ -0.46
USP40-205ENST00000430158 RNF215Q9Y6U7 377 aa12.16□□□□□ -0.46
USP40-205ENST00000430158 SNRNP200O75643 2136 aaKnown RBP12.16□□□□□ -0.46
USP40-205ENST00000430158 TRBV23OR9-2A0A075B6M9 112 aa12.15□□□□□ -0.46
USP40-205ENST00000430158 UBA6A0AVT1 1052 aaPredicted RBP12.15□□□□□ -0.46
USP40-205ENST00000430158 OR5K4A6NMS3 321 aa12.15□□□□□ -0.46
USP40-205ENST00000430158 OR52A4PA6NMU1 304 aa12.15□□□□□ -0.46
USP40-205ENST00000430158 LIN7AO14910 233 aaPredicted RBP12.15□□□□□ -0.46
USP40-205ENST00000430158 GP1BAP07359 652 aa12.15□□□□□ -0.46
USP40-205ENST00000430158 FTH1P19P0C7X4 201 aa12.15□□□□□ -0.46
USP40-205ENST00000430158 PNLIPP16233 465 aa12.15□□□□□ -0.46
USP40-205ENST00000430158 GLB1P16278 677 aa12.15□□□□□ -0.46
USP40-205ENST00000430158 VCLP18206 1134 aa12.15□□□□□ -0.46
USP40-205ENST00000430158 ITGB6P18564 788 aa12.15□□□□□ -0.46
USP40-205ENST00000430158 CD9P21926 228 aa12.15□□□□□ -0.46
USP40-205ENST00000430158 ABCG1P45844 678 aa12.15□□□□□ -0.46
USP40-205ENST00000430158 ID4P47928 161 aa12.15□□□□□ -0.46
USP40-205ENST00000430158 TUBB4BP68371 445 aa12.15□□□□□ -0.46
USP40-205ENST00000430158 RBM20Q5T481 1227 aaKnown RBP12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms