RNA–Protein interactions for RNA: ENST00000428287.6

RIF1-203, Transcript of replication timing regulatory factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RIF1, Length 7,722 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-203ENST00000428287 DEFA3P59666 94 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 B2MP61769 119 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 CAPSQ13938 189 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 GPR149Q86SP6 731 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 ADHFE1Q8IWW8 467 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 SCUBE3Q8IX30 993 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 FIG4Q92562 907 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 DGCR6LQ9BY27 220 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 SEPT10Q9P0V9 454 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 OPTCQ9UBM4 332 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 PCDHGB2Q9Y5G2 931 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 SNX5Q9Y5X3 404 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 LYVE1Q9Y5Y7 322 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 AXIN1O15169 862 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 WBP4O75554 376 aaKnown RBP5.07□□□□□ -1.6
RIF1-203ENST00000428287 ALPPP05187 535 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 CHRNB3Q05901 458 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 ZBTB6Q15916 424 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 TYSND1Q2T9J0 566 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 DCAF15Q66K64 600 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 MFSD6LQ8IWD5 586 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 SETD9Q8NE22 299 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 TMEM209Q96SK2 561 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 GMLQ99445 158 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 NUAK2Q9H093 628 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 IL1RAPQ9NPH3 570 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 OSER1Q9NX31 292 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 SRRDQ9UH36 339 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 MEIOCA2RUB1 952 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 A8MVJ9 347 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 PTGES3LE9PB15 166 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 H3BQ06 376 aaPredicted RBP5.07□□□□□ -1.6
RIF1-203ENST00000428287 TEX28O15482 410 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 PDPK1O15530 556 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 PCNAP12004 261 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 CPB1P15086 417 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 LBPP18428 481 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 PTPN3P26045 913 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 KCTD2Q14681 263 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 PAGE3Q5JUK9 113 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 ARTNQ5T4W7 220 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 HIPK1Q86Z02 1210 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 HTRA1Q92743 480 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 PGAP3Q96FM1 320 aaPredicted RBP5.07□□□□□ -1.6
RIF1-203ENST00000428287 ZC3HAV1LQ96H79 300 aaKnown RBP5.07□□□□□ -1.6
RIF1-203ENST00000428287 MBOAT4Q96T53 435 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 ROGDIQ9GZN7 287 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 SLAMF8Q9P0V8 285 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 LEF1Q9UJU2 399 aaPredicted RBP5.07□□□□□ -1.6
RIF1-203ENST00000428287 TBC1D24Q9ULP9 559 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 AP3M1Q9Y2T2 418 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 LINC00862A6NCI5 91 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 G3V2T6 193 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 TNPO2O14787 897 aaKnown RBP5.07□□□□□ -1.6
RIF1-203ENST00000428287 PCDHGA12O60330 932 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 PSMA3P25788 255 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 HOXD10P28358 340 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 ADRA1BP35368 520 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 CTSKP43235 329 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 VBP1P61758 197 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 TFAMQ00059 246 aaKnown RBP5.07□□□□□ -1.6
RIF1-203ENST00000428287 ACVR1Q04771 509 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 FAPQ12884 760 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 EIF4EBP2Q13542 120 aaPredicted RBP5.07□□□□□ -1.6
RIF1-203ENST00000428287 FAM98BQ52LJ0 330 aaKnown RBP5.07□□□□□ -1.6
RIF1-203ENST00000428287 NOL9Q5SY16 702 aaKnown RBP5.07□□□□□ -1.6
RIF1-203ENST00000428287 IER5Q5VY09 327 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 CYP20A1Q6UW02 462 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 CES3Q6UWW8 571 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 ZNF782Q6ZMW2 699 aaPredicted RBP5.07□□□□□ -1.6
RIF1-203ENST00000428287 PARP16Q8N5Y8 322 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 FAM181AQ8N9Y4 354 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 ZHX1-C8orf76Q96EF9 292 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 C1QTNF7Q9BXJ2 289 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 POLR3FQ9H1D9 316 aaPredicted RBP5.07□□□□□ -1.6
RIF1-203ENST00000428287 ATP13A1Q9HD20 1204 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 LTB4R2Q9NPC1 389 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 MAGED1Q9Y5V3 778 aaPredicted RBP5.07□□□□□ -1.6
RIF1-203ENST00000428287 COL6A3P12111 3177 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 NOTCH3Q9UM47 2321 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 HMX3A6NHT5 357 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 CCDC154A6NI56 674 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 ZNF623O75123 536 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 SEC24DO94855 1032 aaPredicted RBP5.07□□□□□ -1.6
RIF1-203ENST00000428287 CYP11A1P05108 521 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 IL7RP16871 459 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 AGXTP21549 392 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 NOS2P35228 1153 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 MLLT3P42568 568 aaPredicted RBP5.07□□□□□ -1.6
RIF1-203ENST00000428287 HSPA2P54652 639 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 SOX10P56693 466 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 ERVK-8P63133 956 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 SUPT20HL1Q3ZLR7 823 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 SNAP47Q5SQN1 464 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 ZCCHC8Q6NZY4 707 aaKnown RBP5.07□□□□□ -1.6
RIF1-203ENST00000428287 DENND6AQ8IWF6 608 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 LRRC52Q8N7C0 313 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 PIK3R3Q92569 461 aa5.07□□□□□ -1.6
RIF1-203ENST00000428287 MCCC1Q96RQ3 725 aaPredicted RBP5.07□□□□□ -1.6
RIF1-203ENST00000428287 GTPBP2Q9BX10 602 aaKnown RBP5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms