RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 TRIM16O95361 564 aa10.55□□□□□ -0.72
USP54-204ENST00000422491 F9P00740 461 aa10.55□□□□□ -0.72
USP54-204ENST00000422491 KRT8P05787 483 aa10.55□□□□□ -0.72
USP54-204ENST00000422491 HOXA11P31270 313 aaPredicted RBP10.55□□□□□ -0.72
USP54-204ENST00000422491 GGT5P36269 586 aa10.55□□□□□ -0.72
USP54-204ENST00000422491 UGT2B10P36537 528 aa10.55□□□□□ -0.72
USP54-204ENST00000422491 SERPINH1P50454 418 aaKnown RBP10.55□□□□□ -0.72
USP54-204ENST00000422491 TUBA1BP68363 451 aa10.55□□□□□ -0.72
USP54-204ENST00000422491 ATP6AP1LQ52LC2 224 aa10.55□□□□□ -0.72
USP54-204ENST00000422491 CAPN13Q6MZZ7 669 aaPredicted RBP10.55□□□□□ -0.72
USP54-204ENST00000422491 LBX2Q6XYB7 198 aa10.55□□□□□ -0.72
USP54-204ENST00000422491 TUBA1AQ71U36 451 aa10.55□□□□□ -0.72
USP54-204ENST00000422491 BHLHA9Q7RTU4 235 aa10.55□□□□□ -0.72
USP54-204ENST00000422491 DPP9Q86TI2 863 aa10.55□□□□□ -0.72
USP54-204ENST00000422491 ADHFE1Q8IWW8 467 aa10.55□□□□□ -0.72
USP54-204ENST00000422491 ASCC1Q8N9N2 400 aaKnown RBP10.55□□□□□ -0.72
USP54-204ENST00000422491 SETD9Q8NE22 299 aa10.55□□□□□ -0.72
USP54-204ENST00000422491 OR2T12Q8NG77 320 aa10.55□□□□□ -0.72
USP54-204ENST00000422491 OR6P1Q8NGX9 317 aa10.55□□□□□ -0.72
USP54-204ENST00000422491 ACOX2Q99424 681 aa10.55□□□□□ -0.72
USP54-204ENST00000422491 SLC39A8Q9C0K1 460 aa10.55□□□□□ -0.72
USP54-204ENST00000422491 NPAP1Q9NZP6 1156 aa10.55□□□□□ -0.72
USP54-204ENST00000422491 ZNF221Q9UK13 617 aa10.55□□□□□ -0.72
USP54-204ENST00000422491 MROH6A6NGR9 719 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 KERAO60938 352 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 UROSP10746 265 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 CXCL9Q07325 125 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 TRAF3Q13114 568 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 PWP1Q13610 501 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 ATAD3CQ5T2N8 411 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 ANKS6Q68DC2 871 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 TMC5Q6UXY8 1006 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 UTS2BQ765I0 119 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 SPATC1Q76KD6 591 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 ARMCX2Q7L311 632 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 SAPCD2Q86UD0 394 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 RIOX2Q8IUF8 465 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 NLGN4XQ8N0W4 816 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 FBXO39Q8N4B4 442 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 PARP16Q8N5Y8 322 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 FNDC5Q8NAU1 212 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 OR52E4Q8NGH9 312 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 NUDT8Q8WV74 236 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 EDEM1Q92611 657 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 PDLIM5Q96HC4 596 aaKnown RBP10.54□□□□□ -0.72
USP54-204ENST00000422491 SIGLEC11Q96RL6 698 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 NXF2Q9GZY0 626 aaKnown RBP10.54□□□□□ -0.72
USP54-204ENST00000422491 EPS8L2Q9H6S3 715 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 VAPAQ9P0L0 249 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 UBQLN1Q9UMX0 589 aaKnown RBP10.54□□□□□ -0.72
USP54-204ENST00000422491 A3GALT2U3KPV4 340 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 PDCD11Q14690 1871 aaKnown RBP10.54□□□□□ -0.72
USP54-204ENST00000422491 NYNRINQ9P2P1 1898 aaKnown RBP10.54□□□□□ -0.72
USP54-204ENST00000422491 RGS10O43665 173 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 ALX3O95076 343 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 LCKP06239 509 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 USP17L7P0C7H9 530 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 WARSP23381 471 aaKnown RBP10.54□□□□□ -0.72
USP54-204ENST00000422491 SCNN1GP51170 649 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 ZNF45Q02386 682 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 CCDC58Q4VC31 144 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 EFL1Q7Z2Z2 1120 aaKnown RBP10.54□□□□□ -0.72
USP54-204ENST00000422491 CYP4Z1Q86W10 505 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 ZNF560Q96MR9 790 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 C6orf62Q9GZU0 229 aaPredicted RBP10.54□□□□□ -0.72
USP54-204ENST00000422491 R3HDMLQ9H3Y0 253 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 CCDC177Q9NQR7 707 aaPredicted RBP10.54□□□□□ -0.72
USP54-204ENST00000422491 CNGB3Q9NQW8 809 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 ITM2CQ9NQX7 267 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 FBXL12Q9NXK8 326 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 SCN3BQ9NY72 215 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 IKZF3Q9UKT9 509 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 PKP3Q9Y446 797 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 HSPE1-MOB4S4R3N1 261 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 U3KQV3 271 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 MCM3APO60318 1980 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 A0A1W2PQ67 120 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 TBKBP1A7MCY6 615 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 SUPT3HB4E1H0 165 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 GABRDO14764 452 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 DFNA5O60443 496 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 MRPS14O60783 128 aaKnown RBP10.54□□□□□ -0.72
USP54-204ENST00000422491 RECQL4O94761 1208 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 PARNO95453 639 aaKnown RBP10.54□□□□□ -0.72
USP54-204ENST00000422491 CA8P35219 290 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 HTR3AP46098 478 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 CLK3P49761 638 aaKnown RBP10.54□□□□□ -0.72
USP54-204ENST00000422491 TAF6P49848 677 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 DGKQP52824 942 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 RACK1P63244 317 aaKnown RBP10.54□□□□□ -0.72
USP54-204ENST00000422491 YWHAHQ04917 246 aaPredicted RBP10.54□□□□□ -0.72
USP54-204ENST00000422491 PRKCDQ05655 676 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 KEAP1Q14145 624 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 CDK10Q15131 360 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 SMN1Q16637 294 aaKnown RBP10.54□□□□□ -0.72
USP54-204ENST00000422491 AAK1Q2M2I8 961 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 TPRG1LQ5T0D9 272 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 Q6ZSR9 355 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 FBXO16Q8IX29 292 aaPredicted RBP10.54□□□□□ -0.72
USP54-204ENST00000422491 FAM126BQ8IXS8 530 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms