RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 FCGR1BQ92637 280 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 TMEM203Q969S6 136 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 PRDM8Q9NQV8 689 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 EIF3KQ9UBQ5 218 aaKnown RBP9.19□□□□□ -0.94
COL28A1-201ENST00000399429 ADAM30Q9UKF2 790 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 B8ZZF3 427 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 C5orf58C9J3I9 102 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 IFRD1O00458 451 aaPredicted RBP9.19□□□□□ -0.94
COL28A1-201ENST00000399429 CASKO14936 926 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 MLYCDO95822 493 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 VTNP04004 478 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 MYL12AP19105 171 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 ITGALP20701 1170 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 NOS2P35228 1153 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 CHRNA4P43681 627 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 ARHGEF7Q14155 803 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 ACOX1Q15067 660 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 DPYSL2Q16555 572 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 ADPRMQ3LIE5 342 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 BICRALQ6AI39 1079 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 CHMP1BQ7LBR1 199 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 GALNT7Q86SF2 657 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 CEP97Q8IW35 865 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 PARP16Q8N5Y8 322 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 CHDHQ8NE62 594 aaPredicted RBP9.19□□□□□ -0.94
COL28A1-201ENST00000399429 C7orf57Q8NEG2 295 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 LPAR1Q92633 364 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 SLCO4A1Q96BD0 722 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 PPP1R2P1Q96PQ5 205 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 KCNC2Q96PR1 638 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 SNX18Q96RF0 628 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 PPIL3Q9H2H8 161 aaKnown RBP9.19□□□□□ -0.94
COL28A1-201ENST00000399429 ANKHQ9HCJ1 492 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 IL1RAPQ9NPH3 570 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 SLC2A6Q9UGQ3 507 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 PCDHGA11Q9Y5H2 935 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 MEIOCA2RUB1 952 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 OR4F21O95013 312 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 NDST3O95803 873 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 IL32P24001 234 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 SOAT1P35610 550 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 PTPN5P54829 565 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 KCTD2Q14681 263 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 TSTQ16762 297 aaKnown RBP9.19□□□□□ -0.94
COL28A1-201ENST00000399429 TREML2Q5T2D2 321 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 XRRA1Q6P2D8 792 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 GADL1Q6ZQY3 521 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 SYVN1Q86TM6 617 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 MINDY1Q8N5J2 469 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 FLAD1Q8NFF5 587 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 PCNPQ8WW12 178 aaKnown RBP9.19□□□□□ -0.94
COL28A1-201ENST00000399429 IPCEF1Q8WWN9 437 aaPredicted RBP9.19□□□□□ -0.94
COL28A1-201ENST00000399429 STRA6Q9BX79 667 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 RACGAP1Q9H0H5 632 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 FAM83DQ9H4H8 585 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 TMEM134Q9H6X4 195 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 EVLQ9UI08 416 aaPredicted RBP9.19□□□□□ -0.94
COL28A1-201ENST00000399429 RPS6KA6Q9UK32 745 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 SLC13A4Q9UKG4 626 aa9.19□□□□□ -0.94
COL28A1-201ENST00000399429 INTS6Q9UL03 887 aaKnown RBP9.19□□□□□ -0.94
COL28A1-201ENST00000399429 RGS14O43566 566 aa9.18□□□□□ -0.94
COL28A1-201ENST00000399429 SCO1O75880 301 aa9.18□□□□□ -0.94
COL28A1-201ENST00000399429 C1RP00736 705 aa9.18□□□□□ -0.94
COL28A1-201ENST00000399429 HSD17B1P14061 328 aa9.18□□□□□ -0.94
COL28A1-201ENST00000399429 CD86P42081 329 aa9.18□□□□□ -0.94
COL28A1-201ENST00000399429 RPA4Q13156 261 aa9.18□□□□□ -0.94
COL28A1-201ENST00000399429 NFE2L1Q14494 772 aa9.18□□□□□ -0.94
COL28A1-201ENST00000399429 MARC1Q5VT66 337 aa9.18□□□□□ -0.94
COL28A1-201ENST00000399429 METTL23Q86XA0 190 aa9.18□□□□□ -0.94
COL28A1-201ENST00000399429 PNPLA1Q8N8W4 532 aa9.18□□□□□ -0.94
COL28A1-201ENST00000399429 OTUB1Q96FW1 271 aaPredicted RBP9.18□□□□□ -0.94
COL28A1-201ENST00000399429 TSSK3Q96PN8 268 aa9.18□□□□□ -0.94
COL28A1-201ENST00000399429 CDK15Q96Q40 435 aa9.18□□□□□ -0.94
COL28A1-201ENST00000399429 CDT1Q9H211 546 aa9.18□□□□□ -0.94
COL28A1-201ENST00000399429 TTYH1Q9H313 450 aaPredicted RBP9.18□□□□□ -0.94
COL28A1-201ENST00000399429 PLSCR3Q9NRY6 295 aa9.18□□□□□ -0.94
COL28A1-201ENST00000399429 ZNF490Q9ULM2 529 aaPredicted RBP9.18□□□□□ -0.94
COL28A1-201ENST00000399429 SAMD4AQ9UPU9 718 aaKnown RBP9.18□□□□□ -0.94
COL28A1-201ENST00000399429 NOD1Q9Y239 953 aa9.18□□□□□ -0.94
COL28A1-201ENST00000399429 ARVCFO00192 962 aa9.18□□□□□ -0.94
COL28A1-201ENST00000399429 RFXANKO14593 260 aa9.18□□□□□ -0.94
COL28A1-201ENST00000399429 HOXC11O43248 304 aaPredicted RBP9.18□□□□□ -0.94
COL28A1-201ENST00000399429 ALDH1A2O94788 518 aa9.18□□□□□ -0.94
COL28A1-201ENST00000399429 KDM4BO94953 1096 aa9.18□□□□□ -0.94
COL28A1-201ENST00000399429 SCELO95171 688 aa9.18□□□□□ -0.94
COL28A1-201ENST00000399429 F9P00740 461 aa9.18□□□□□ -0.94
COL28A1-201ENST00000399429 GSTM1P09488 218 aa9.18□□□□□ -0.94
COL28A1-201ENST00000399429 PRKCAP17252 672 aa9.18□□□□□ -0.94
COL28A1-201ENST00000399429 RGS4P49798 205 aa9.18□□□□□ -0.94
COL28A1-201ENST00000399429 RORCP51449 518 aa9.18□□□□□ -0.94
COL28A1-201ENST00000399429 DGKEP52429 567 aa9.18□□□□□ -0.94
COL28A1-201ENST00000399429 WNT3AP56704 352 aa9.18□□□□□ -0.94
COL28A1-201ENST00000399429 HUNKP57058 714 aa9.18□□□□□ -0.94
COL28A1-201ENST00000399429 ZZZ3Q8IYH5 903 aa9.18□□□□□ -0.94
COL28A1-201ENST00000399429 TMEM199Q8N511 208 aa9.18□□□□□ -0.94
COL28A1-201ENST00000399429 DTX3Q8N9I9 347 aa9.18□□□□□ -0.94
COL28A1-201ENST00000399429 GALNT11Q8NCW6 608 aa9.18□□□□□ -0.94
COL28A1-201ENST00000399429 PIH1D2Q8WWB5 315 aa9.18□□□□□ -0.94
COL28A1-201ENST00000399429 LPIN3Q9BQK8 851 aa9.18□□□□□ -0.94
COL28A1-201ENST00000399429 ULBP1Q9BZM6 244 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms