RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 CHDHQ8NE62 594 aaPredicted RBP12.52□□□□□ -0.41
SHMT1-205ENST00000395684 OR4F6Q8NGB9 312 aa12.52□□□□□ -0.41
SHMT1-205ENST00000395684 TRUB1Q8WWH5 349 aaKnown RBP12.52□□□□□ -0.41
SHMT1-205ENST00000395684 FKBP10Q96AY3 582 aa12.52□□□□□ -0.41
SHMT1-205ENST00000395684 SPON2Q9BUD6 331 aa12.52□□□□□ -0.41
SHMT1-205ENST00000395684 GORASP2Q9H8Y8 452 aa12.52□□□□□ -0.41
SHMT1-205ENST00000395684 SLC27A5Q9Y2P5 690 aa12.52□□□□□ -0.41
SHMT1-205ENST00000395684 SOBPA7XYQ1 873 aa12.51□□□□□ -0.41
SHMT1-205ENST00000395684 INSIG1O15503 277 aa12.51□□□□□ -0.41
SHMT1-205ENST00000395684 DUSP11O75319 330 aaKnown RBP12.51□□□□□ -0.41
SHMT1-205ENST00000395684 SULT1C4O75897 302 aa12.51□□□□□ -0.41
SHMT1-205ENST00000395684 CLPXO76031 633 aa12.51□□□□□ -0.41
SHMT1-205ENST00000395684 IGHA2P01877 340 aa12.51□□□□□ -0.41
SHMT1-205ENST00000395684 PSMA3P25788 255 aa12.51□□□□□ -0.41
SHMT1-205ENST00000395684 SLC6A4P31645 630 aa12.51□□□□□ -0.41
SHMT1-205ENST00000395684 AQP6Q13520 282 aa12.51□□□□□ -0.41
SHMT1-205ENST00000395684 PTGR1Q14914 329 aa12.51□□□□□ -0.41
SHMT1-205ENST00000395684 NR1D2Q14995 579 aa12.51□□□□□ -0.41
SHMT1-205ENST00000395684 SKIV2LQ15477 1246 aaKnown RBP12.51□□□□□ -0.41
SHMT1-205ENST00000395684 C6orf141Q5SZD1 244 aa12.51□□□□□ -0.41
SHMT1-205ENST00000395684 GOLGA7Q7Z5G4 137 aa12.51□□□□□ -0.41
SHMT1-205ENST00000395684 ZBTB8BQ8NAP8 495 aaPredicted RBP12.51□□□□□ -0.41
SHMT1-205ENST00000395684 LPCAT1Q8NF37 534 aa12.51□□□□□ -0.41
SHMT1-205ENST00000395684 OR2T12Q8NG77 320 aa12.51□□□□□ -0.41
SHMT1-205ENST00000395684 OR10A6Q8NH74 314 aa12.51□□□□□ -0.41
SHMT1-205ENST00000395684 CHPT1Q8WUD6 406 aa12.51□□□□□ -0.41
SHMT1-205ENST00000395684 HDAC2Q92769 488 aaKnown RBP12.51□□□□□ -0.41
SHMT1-205ENST00000395684 C17orf80Q9BSJ5 609 aa12.51□□□□□ -0.41
SHMT1-205ENST00000395684 CINPQ9BW66 212 aaPredicted RBP12.51□□□□□ -0.41
SHMT1-205ENST00000395684 OSBPL10Q9BXB5 764 aa12.51□□□□□ -0.41
SHMT1-205ENST00000395684 TDRD1Q9BXT4 1180 aaKnown RBP12.51□□□□□ -0.41
SHMT1-205ENST00000395684 SEPT3Q9UH03 358 aa12.51□□□□□ -0.41
SHMT1-205ENST00000395684 NOD1Q9Y239 953 aa12.51□□□□□ -0.41
SHMT1-205ENST00000395684 PRG3Q9Y2Y8 225 aaPredicted RBP12.51□□□□□ -0.41
SHMT1-205ENST00000395684 PCDHB5Q9Y5E4 795 aa12.51□□□□□ -0.41
SHMT1-205ENST00000395684 PLXNA3P51805 1871 aa12.51□□□□□ -0.41
SHMT1-205ENST00000395684 GBF1Q92538 1859 aa12.51□□□□□ -0.41
SHMT1-205ENST00000395684 HPRP00739 348 aa12.51□□□□□ -0.41
SHMT1-205ENST00000395684 CST1P01037 141 aa12.51□□□□□ -0.41
SHMT1-205ENST00000395684 CR2P20023 1033 aa12.51□□□□□ -0.41
SHMT1-205ENST00000395684 AGXTP21549 392 aa12.51□□□□□ -0.41
SHMT1-205ENST00000395684 LPOP22079 712 aaPredicted RBP12.51□□□□□ -0.41
SHMT1-205ENST00000395684 TTPAP49638 278 aa12.51□□□□□ -0.41
SHMT1-205ENST00000395684 PPP2R2BQ00005 443 aa12.51□□□□□ -0.41
SHMT1-205ENST00000395684 SPCS2Q15005 226 aa12.51□□□□□ -0.41
SHMT1-205ENST00000395684 ZRANB3Q5FWF4 1079 aa12.51□□□□□ -0.41
SHMT1-205ENST00000395684 TTC23Q5W5X9 447 aa12.51□□□□□ -0.41
SHMT1-205ENST00000395684 OR8J3Q8NGG0 315 aa12.51□□□□□ -0.41
SHMT1-205ENST00000395684 KCNJ9Q92806 393 aa12.51□□□□□ -0.41
SHMT1-205ENST00000395684 NRBF2Q96F24 287 aa12.51□□□□□ -0.41
SHMT1-205ENST00000395684 ARMC7Q9H6L4 198 aa12.51□□□□□ -0.41
SHMT1-205ENST00000395684 TLR8Q9NR97 1041 aaKnown RBP12.51□□□□□ -0.41
SHMT1-205ENST00000395684 SELENONQ9NZV5 590 aa12.51□□□□□ -0.41
SHMT1-205ENST00000395684 LIMD1Q9UGP4 676 aa12.51□□□□□ -0.41
SHMT1-205ENST00000395684 ADGRE2Q9UHX3 823 aa12.51□□□□□ -0.41
SHMT1-205ENST00000395684 ZMYM5Q9UJ78 669 aa12.51□□□□□ -0.41
SHMT1-205ENST00000395684 CCL27Q9Y4X3 112 aa12.51□□□□□ -0.41
SHMT1-205ENST00000395684 CD9P21926 228 aa12.5□□□□□ -0.41
SHMT1-205ENST00000395684 JAK1P23458 1154 aa12.5□□□□□ -0.41
SHMT1-205ENST00000395684 CLCN7P51798 805 aa12.5□□□□□ -0.41
SHMT1-205ENST00000395684 PHEXP78562 749 aa12.5□□□□□ -0.41
SHMT1-205ENST00000395684 CD47Q08722 323 aa12.5□□□□□ -0.41
SHMT1-205ENST00000395684 VARS2Q5ST30 1063 aaKnown RBP12.5□□□□□ -0.41
SHMT1-205ENST00000395684 LDLRAP1Q5SW96 308 aa12.5□□□□□ -0.41
SHMT1-205ENST00000395684 NECAB2Q7Z6G3 386 aa12.5□□□□□ -0.41
SHMT1-205ENST00000395684 ZNF548Q8NEK5 533 aaPredicted RBP12.5□□□□□ -0.41
SHMT1-205ENST00000395684 GTF2H4Q92759 462 aa12.5□□□□□ -0.41
SHMT1-205ENST00000395684 CCDC115Q96NT0 180 aa12.5□□□□□ -0.41
SHMT1-205ENST00000395684 THUMPD3Q9BV44 507 aaKnown RBP12.5□□□□□ -0.41
SHMT1-205ENST00000395684 FUNDC2Q9BWH2 189 aa12.5□□□□□ -0.41
SHMT1-205ENST00000395684 UGT2B28Q9BY64 529 aa12.5□□□□□ -0.41
SHMT1-205ENST00000395684 CRISPLD1Q9H336 500 aa12.5□□□□□ -0.41
SHMT1-205ENST00000395684 OLA1Q9NTK5 396 aaKnown RBP12.5□□□□□ -0.41
SHMT1-205ENST00000395684 DNAJB9Q9UBS3 223 aa12.5□□□□□ -0.41
SHMT1-205ENST00000395684 UBA2Q9UBT2 640 aaPredicted RBP12.5□□□□□ -0.41
SHMT1-205ENST00000395684 GNPTGQ9UJJ9 305 aa12.5□□□□□ -0.41
SHMT1-205ENST00000395684 PDE10AQ9Y233 779 aa12.5□□□□□ -0.41
SHMT1-205ENST00000395684 ERGIC3Q9Y282 383 aa12.5□□□□□ -0.41
SHMT1-205ENST00000395684 SCN10AQ9Y5Y9 1956 aa12.5□□□□□ -0.41
SHMT1-205ENST00000395684 E5RI56 91 aa12.5□□□□□ -0.41
SHMT1-205ENST00000395684 F5H5T6 163 aa12.5□□□□□ -0.41
SHMT1-205ENST00000395684 AXIN1O15169 862 aa12.5□□□□□ -0.41
SHMT1-205ENST00000395684 TSPAN3O60637 253 aa12.5□□□□□ -0.41
SHMT1-205ENST00000395684 XYLBO75191 536 aa12.5□□□□□ -0.41
SHMT1-205ENST00000395684 BCAS1O75363 584 aaPredicted RBP12.5□□□□□ -0.41
SHMT1-205ENST00000395684 PRKACGP22612 351 aa12.5□□□□□ -0.41
SHMT1-205ENST00000395684 OR1G1P47890 313 aa12.5□□□□□ -0.41
SHMT1-205ENST00000395684 CLCN4P51793 760 aa12.5□□□□□ -0.41
SHMT1-205ENST00000395684 ARPP19P56211 112 aa12.5□□□□□ -0.41
SHMT1-205ENST00000395684 RING1Q06587 406 aa12.5□□□□□ -0.41
SHMT1-205ENST00000395684 KCNAB2Q13303 367 aa12.5□□□□□ -0.41
SHMT1-205ENST00000395684 ITGADQ13349 1161 aa12.5□□□□□ -0.41
SHMT1-205ENST00000395684 PCBP2Q15366 365 aaKnown RBP eCLIP12.5□□□□□ -0.41
SHMT1-205ENST00000395684 SLC16A12Q6ZSM3 486 aa12.5□□□□□ -0.41
SHMT1-205ENST00000395684 TMEM179BQ7Z7N9 219 aa12.5□□□□□ -0.41
SHMT1-205ENST00000395684 MSRB3Q8IXL7 192 aa12.5□□□□□ -0.41
SHMT1-205ENST00000395684 EFHBQ8N7U6 833 aa12.5□□□□□ -0.41
SHMT1-205ENST00000395684 TTC16Q8NEE8 873 aa12.5□□□□□ -0.41
SHMT1-205ENST00000395684 PJA1Q8NG27 643 aa12.5□□□□□ -0.41
SHMT1-205ENST00000395684 SLC13A3Q8WWT9 602 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms