RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 APOBEC3GQ9HC16 384 aaKnown RBP-0.89□□□□□ -2.55
RNU6-540P-201ENST00000384622 ESM1Q9NQ30 184 aa-0.89□□□□□ -2.55
RNU6-540P-201ENST00000384622 ZNF331Q9NQX6 463 aaPredicted RBP-0.89□□□□□ -2.55
RNU6-540P-201ENST00000384622 IARS2Q9NSE4 1012 aaKnown RBP-0.89□□□□□ -2.55
RNU6-540P-201ENST00000384622 PTTG2Q9NZH5 202 aa-0.89□□□□□ -2.55
RNU6-540P-201ENST00000384622 HCN3Q9P1Z3 774 aa-0.89□□□□□ -2.55
RNU6-540P-201ENST00000384622 RIPK3Q9Y572 518 aa-0.89□□□□□ -2.55
RNU6-540P-201ENST00000384622 MRPS18BQ9Y676 258 aaKnown RBP-0.89□□□□□ -2.55
RNU6-540P-201ENST00000384622 SELENOKQ9Y6D0 94 aa-0.89□□□□□ -2.55
RNU6-540P-201ENST00000384622 SEC23IPQ9Y6Y8 1000 aaKnown RBP-0.89□□□□□ -2.55
RNU6-540P-201ENST00000384622 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP-0.89□□□□□ -2.55
RNU6-540P-201ENST00000384622 SVILO95425 2214 aa-0.89□□□□□ -2.55
RNU6-540P-201ENST00000384622 LTBP1Q14766 1721 aa-0.89□□□□□ -2.55
RNU6-540P-201ENST00000384622 PTPRCP08575 1304 aa-0.89□□□□□ -2.55
RNU6-540P-201ENST00000384622 ABCA1O95477 2261 aa-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 LOC105371242A0A075B767 164 aa-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 A0A087WZY1 265 aa-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 HSFX4A0A1B0GTS1 333 aaPredicted RBP-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 HSFX3A0A1B0GWH4 333 aaPredicted RBP-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 TARSL2A2RTX5 802 aaKnown RBP-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 MFSD2BA6NFX1 497 aa-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 WWP2O00308 870 aa-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 NKX2-8O15522 239 aa-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 UFL1O94874 794 aa-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 POU2F2P09086 479 aa-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 TXNP10599 105 aaKnown RBP-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 KITP10721 976 aa-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 TOP1P11387 765 aaKnown RBP-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 IL1R1P14778 569 aa-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 CPN1P15169 458 aa-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 CTPS1P17812 591 aa-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 NCLP19338 710 aaKnown RBP-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 NR2F2P24468 414 aa-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 GSTM2P28161 218 aa-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 ERCC5P28715 1186 aaPredicted RBP-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 EPHA2P29317 976 aa-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 ELF1P32519 619 aa-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 RDXP35241 583 aaKnown RBP-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 ASIPP42127 132 aa-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 SKIV2L2P42285 1042 aaKnown RBP-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 ADKP55263 362 aaKnown RBP-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 FOXL2P58012 376 aa-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 DEFA1P59665 94 aa-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 DEFA3P59666 94 aa-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 PRKG1Q13976 671 aa-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 SMAD1Q15797 465 aaKnown RBP-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 TAF9Q16594 264 aa-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 TIMM50Q3ZCQ8 353 aa-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 CDONQ4KMG0 1287 aa-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 LINC00242Q5T6M2 205 aa-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 AGAP7PQ5VUJ5 663 aa-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 Q5XG85 94 aa-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 NFRKBQ6P4R8 1299 aa-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 BRINP3Q76B58 766 aa-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 DDX46Q7L014 1031 aaKnown RBP-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 TAOK1Q7L7X3 1001 aa-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 LONP2Q86WA8 852 aa-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 BRSK2Q8IWQ3 736 aa-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 ZNF615Q8N8J6 731 aa-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 C15orf53Q8NAA6 179 aa-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 OR4N2Q8NGD1 307 aa-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 FBXO30Q8TB52 745 aa-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 HPSE2Q8WWQ2 592 aa-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 QRFPRQ96P65 431 aa-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 LGMNQ99538 433 aa-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 OLFM1Q99784 485 aa-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 HAUS8Q9BT25 410 aa-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 CADM1Q9BY67 442 aaKnown RBP-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 DEFB126Q9BYW3 111 aa-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 TKTL2Q9H0I9 626 aa-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 EPHX3Q9H6B9 360 aa-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 MED20Q9H944 212 aa-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 ISG20L2Q9H9L3 353 aaKnown RBP-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 KCNK9Q9NPC2 374 aa-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 TCP11L1Q9NUJ3 509 aa-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 COQ3Q9NZJ6 369 aa-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 ARMCX1Q9P291 453 aa-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 KLHL9Q9P2J3 617 aa-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 THAP10Q9P2Z0 257 aaPredicted RBP-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 EPS15L1Q9UBC2 864 aa-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 PNMA8BQ9ULN7 279 aaPredicted RBP-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 CAPN11Q9UMQ6 739 aa-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 SLC12A4Q9UP95 1085 aa-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 CDK11AQ9UQ88 783 aaPredicted RBP-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 R3HDM2Q9Y2K5 976 aaKnown RBP-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 ZNF835Q9Y2P0 537 aa-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 PRUNE2Q8WUY3 3088 aa-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 ACACAQ13085 2346 aa-0.9□□□□□ -2.55
RNU6-540P-201ENST00000384622 MED13LQ71F56 2210 aa-0.91□□□□□ -2.55
RNU6-540P-201ENST00000384622 IGLV2-18A0A075B6J9 118 aa-0.91□□□□□ -2.56
RNU6-540P-201ENST00000384622 A0A1W2PPL8 197 aa-0.91□□□□□ -2.56
RNU6-540P-201ENST00000384622 MTMR11A4FU01 709 aa-0.91□□□□□ -2.56
RNU6-540P-201ENST00000384622 RBMY1BA6NDE4 496 aaKnown RBP-0.91□□□□□ -2.56
RNU6-540P-201ENST00000384622 RBMY1EA6NEQ0 496 aaKnown RBP-0.91□□□□□ -2.56
RNU6-540P-201ENST00000384622 MSGN1A6NI15 193 aa-0.91□□□□□ -2.56
RNU6-540P-201ENST00000384622 B4DXG7 233 aa-0.91□□□□□ -2.56
RNU6-540P-201ENST00000384622 DAB1O75553 588 aa-0.91□□□□□ -2.56
RNU6-540P-201ENST00000384622 CSPG5O95196 566 aa-0.91□□□□□ -2.56
RNU6-540P-201ENST00000384622 DCNP07585 359 aaKnown RBP-0.91□□□□□ -2.56
RNU6-540P-201ENST00000384622 RBMY1DP0C7P1 496 aaKnown RBP-0.91□□□□□ -2.56
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms