RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 SLC41A3Q96GZ6 507 aa12.47□□□□□ -0.41
COL6A3-203ENST00000353578 NOMO3P69849 1222 aa12.46□□□□□ -0.41
COL6A3-203ENST00000353578 NOMO1Q15155 1222 aa12.46□□□□□ -0.41
COL6A3-203ENST00000353578 OR51D1Q8NGF3 324 aa12.46□□□□□ -0.41
COL6A3-203ENST00000353578 NECAB3Q96P71 396 aaPredicted RBP12.46□□□□□ -0.41
COL6A3-203ENST00000353578 NPAS2Q99743 824 aa12.46□□□□□ -0.41
COL6A3-203ENST00000353578 SNTG1Q9NSN8 517 aa12.46□□□□□ -0.41
COL6A3-203ENST00000353578 C5orf51A6NDU8 294 aa12.46□□□□□ -0.41
COL6A3-203ENST00000353578 PRORSD1PA6NEY8 169 aa12.46□□□□□ -0.41
COL6A3-203ENST00000353578 URADA6NGE7 173 aa12.46□□□□□ -0.41
COL6A3-203ENST00000353578 J3QR89 54 aa12.46□□□□□ -0.41
COL6A3-203ENST00000353578 ERVK-10P10266 1014 aa12.46□□□□□ -0.41
COL6A3-203ENST00000353578 HEPACAMQ14CZ8 416 aa12.46□□□□□ -0.41
COL6A3-203ENST00000353578 NPTX1Q15818 432 aa12.46□□□□□ -0.41
COL6A3-203ENST00000353578 USP49Q70CQ1 688 aa12.46□□□□□ -0.41
COL6A3-203ENST00000353578 SH3RF1Q7Z6J0 888 aa12.46□□□□□ -0.41
COL6A3-203ENST00000353578 PTGR2Q8N8N7 351 aaPredicted RBP12.46□□□□□ -0.41
COL6A3-203ENST00000353578 OR2L2Q8NH16 312 aa12.46□□□□□ -0.41
COL6A3-203ENST00000353578 HAVCR2Q8TDQ0 301 aa12.46□□□□□ -0.41
COL6A3-203ENST00000353578 LRTOMTQ8WZ04 291 aa12.46□□□□□ -0.41
COL6A3-203ENST00000353578 PNMA5Q96PV4 448 aa12.46□□□□□ -0.41
COL6A3-203ENST00000353578 POLR1EQ9GZS1 481 aaKnown RBP12.46□□□□□ -0.41
COL6A3-203ENST00000353578 ZIM2Q9NZV7 527 aa12.46□□□□□ -0.41
COL6A3-203ENST00000353578 ACSL4O60488 711 aa12.46□□□□□ -0.41
COL6A3-203ENST00000353578 PGLSO95336 258 aa12.46□□□□□ -0.41
COL6A3-203ENST00000353578 FGBP02675 491 aa12.46□□□□□ -0.41
COL6A3-203ENST00000353578 NRIP1P48552 1158 aa12.46□□□□□ -0.41
COL6A3-203ENST00000353578 EN1Q05925 392 aaPredicted RBP12.46□□□□□ -0.41
COL6A3-203ENST00000353578 SMAD1Q15797 465 aaKnown RBP12.46□□□□□ -0.41
COL6A3-203ENST00000353578 KIAA1614Q5VZ46 1190 aa12.46□□□□□ -0.41
COL6A3-203ENST00000353578 MED8Q96G25 268 aa12.46□□□□□ -0.41
COL6A3-203ENST00000353578 TMEM45AQ9NWC5 275 aa12.46□□□□□ -0.41
COL6A3-203ENST00000353578 COL20A1Q9P218 1284 aa12.46□□□□□ -0.41
COL6A3-203ENST00000353578 DPYSL4O14531 572 aa12.46□□□□□ -0.41
COL6A3-203ENST00000353578 NR2F1P10589 423 aa12.46□□□□□ -0.41
COL6A3-203ENST00000353578 PDHA2P29803 388 aa12.46□□□□□ -0.41
COL6A3-203ENST00000353578 ZNF730Q6ZMV8 503 aa12.46□□□□□ -0.41
COL6A3-203ENST00000353578 CREB3L2Q70SY1 520 aa12.46□□□□□ -0.41
COL6A3-203ENST00000353578 SLC38A4Q969I6 547 aa12.46□□□□□ -0.41
COL6A3-203ENST00000353578 MXRA8Q9BRK3 442 aa12.46□□□□□ -0.41
COL6A3-203ENST00000353578 hCG_1818297A0A087WSY0 165 aa12.46□□□□□ -0.42
COL6A3-203ENST00000353578 NUDT19A8MXV4 375 aa12.46□□□□□ -0.42
COL6A3-203ENST00000353578 AGPSO00116 658 aa12.46□□□□□ -0.42
COL6A3-203ENST00000353578 GH2P01242 217 aa12.46□□□□□ -0.42
COL6A3-203ENST00000353578 EXOC3L2Q2M3D2 409 aa12.46□□□□□ -0.42
COL6A3-203ENST00000353578 TDRD10Q5VZ19 366 aaKnown RBP12.46□□□□□ -0.42
COL6A3-203ENST00000353578 MIB1Q86YT6 1006 aa12.46□□□□□ -0.42
COL6A3-203ENST00000353578 EPS8L1Q8TE68 723 aa12.46□□□□□ -0.42
COL6A3-203ENST00000353578 POLR2J2Q9GZM3 115 aaKnown RBP12.46□□□□□ -0.42
COL6A3-203ENST00000353578 XPNPEP1Q9NQW7 623 aa12.46□□□□□ -0.42
COL6A3-203ENST00000353578 AGAP5A6NIR3 686 aa12.46□□□□□ -0.42
COL6A3-203ENST00000353578 JCHAINP01591 159 aa12.46□□□□□ -0.42
COL6A3-203ENST00000353578 ATP13A4Q4VNC1 1196 aa12.46□□□□□ -0.42
COL6A3-203ENST00000353578 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.46□□□□□ -0.42
COL6A3-203ENST00000353578 RAD51AP1Q96B01 352 aa12.46□□□□□ -0.42
COL6A3-203ENST00000353578 TMEM260Q9NX78 707 aa12.46□□□□□ -0.42
COL6A3-203ENST00000353578 H7C4K7 107 aa12.46□□□□□ -0.42
COL6A3-203ENST00000353578 CSTF2P33240 577 aaKnown RBP eCLIP12.46□□□□□ -0.42
COL6A3-203ENST00000353578 ANTXR2P58335 489 aa12.46□□□□□ -0.42
COL6A3-203ENST00000353578 ZNF782Q6ZMW2 699 aaPredicted RBP12.46□□□□□ -0.42
COL6A3-203ENST00000353578 POC1BQ8TC44 478 aa12.46□□□□□ -0.42
COL6A3-203ENST00000353578 RNF146Q9NTX7 359 aa12.46□□□□□ -0.42
COL6A3-203ENST00000353578 NUDT4Q9NZJ9 180 aa12.46□□□□□ -0.42
COL6A3-203ENST00000353578 C14orf166Q9Y224 244 aaKnown RBP12.46□□□□□ -0.42
COL6A3-203ENST00000353578 ERBB3P21860 1342 aa12.46□□□□□ -0.42
COL6A3-203ENST00000353578 PRSS44E7EML9 344 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 MAP3K6O95382 1288 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 HLA-DQA2P01906 255 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 MAP2K3P46734 347 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 SLC6A3Q01959 620 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 SRSF11Q05519 484 aaKnown RBP12.45□□□□□ -0.42
COL6A3-203ENST00000353578 TROAPQ12815 778 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 CBWD3Q5JTY5 395 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 CBWD5Q5RIA9 395 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 LNX2Q8N448 690 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 LPGAT1Q92604 370 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 SCRN2Q96FV2 425 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 NIPA1Q7RTP0 329 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 DPYSL5Q9BPU6 564 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 MTFR1LQ9H019 292 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 LMTK2Q8IWU2 1503 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 SRCP12931 536 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 RGS19P49795 217 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 PROSER3Q2NL68 480 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 ZNF529Q6P280 563 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 IDO2Q6ZQW0 420 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 GLT6D1Q7Z4J2 308 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 SPPL2CQ8IUH8 684 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 ZNF606Q8WXB4 792 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 GEMIN6Q8WXD5 167 aaKnown RBP12.45□□□□□ -0.42
COL6A3-203ENST00000353578 ADGRB3O60242 1522 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 CIB4A0PJX0 185 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 MBL2P11226 248 aaPredicted RBP12.45□□□□□ -0.42
COL6A3-203ENST00000353578 TYMPP19971 482 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 UBA1P22314 1058 aaKnown RBP12.45□□□□□ -0.42
COL6A3-203ENST00000353578 TOB1P50616 345 aaPredicted RBP12.45□□□□□ -0.42
COL6A3-203ENST00000353578 SPATA20Q8TB22 786 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 ABCB9Q9NP78 766 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 FECHP22830 423 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 GTF2IRD2BQ6EKJ0 949 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms