RNA–Protein interactions for RNA: ENST00000343060.4

HOXA1-201, Transcript of homeobox A1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXA1, Length 2,517 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1-201ENST00000343060 USP43Q70EL4 1123 aa9.53□□□□□ -0.88
HOXA1-201ENST00000343060 PLD3Q8IV08 490 aa9.53□□□□□ -0.88
HOXA1-201ENST00000343060 ABI1Q8IZP0 508 aa9.53□□□□□ -0.88
HOXA1-201ENST00000343060 POC5Q8NA72 575 aa9.53□□□□□ -0.88
HOXA1-201ENST00000343060 OR2T12Q8NG77 320 aa9.53□□□□□ -0.88
HOXA1-201ENST00000343060 FBXO30Q8TB52 745 aa9.53□□□□□ -0.88
HOXA1-201ENST00000343060 STAG3L4Q8TBR4 150 aa9.53□□□□□ -0.88
HOXA1-201ENST00000343060 FRS2Q8WU20 508 aa9.53□□□□□ -0.88
HOXA1-201ENST00000343060 PDLIM5Q96HC4 596 aaKnown RBP9.53□□□□□ -0.88
HOXA1-201ENST00000343060 NACA2Q9H009 215 aa9.53□□□□□ -0.88
HOXA1-201ENST00000343060 R3HDMLQ9H3Y0 253 aa9.53□□□□□ -0.88
HOXA1-201ENST00000343060 CATSPERBQ9H7T0 1116 aa9.53□□□□□ -0.88
HOXA1-201ENST00000343060 EXD2Q9NVH0 621 aa9.53□□□□□ -0.88
HOXA1-201ENST00000343060 UTS2RQ9UKP6 389 aa9.53□□□□□ -0.88
HOXA1-201ENST00000343060 SUPT3HB4E1H0 165 aa9.52□□□□□ -0.88
HOXA1-201ENST00000343060 HOXC11O43248 304 aaPredicted RBP9.52□□□□□ -0.88
HOXA1-201ENST00000343060 TPD52L2O43399 206 aaKnown RBP9.52□□□□□ -0.88
HOXA1-201ENST00000343060 LDB2O43679 373 aa9.52□□□□□ -0.88
HOXA1-201ENST00000343060 GUCY1B2O75343 617 aa9.52□□□□□ -0.88
HOXA1-201ENST00000343060 ECI2O75521 394 aa9.52□□□□□ -0.88
HOXA1-201ENST00000343060 SLC4A1P02730 911 aa9.52□□□□□ -0.88
HOXA1-201ENST00000343060 MMP2P08253 660 aa9.52□□□□□ -0.88
HOXA1-201ENST00000343060 MSH3P20585 1137 aa9.52□□□□□ -0.88
HOXA1-201ENST00000343060 OGNP20774 298 aaKnown RBP9.52□□□□□ -0.88
HOXA1-201ENST00000343060 EFNA1P20827 205 aaPredicted RBP9.52□□□□□ -0.88
HOXA1-201ENST00000343060 PSMB9P28065 219 aa9.52□□□□□ -0.88
HOXA1-201ENST00000343060 PRDX3P30048 256 aaKnown RBP9.52□□□□□ -0.88
HOXA1-201ENST00000343060 HUNKP57058 714 aa9.52□□□□□ -0.88
HOXA1-201ENST00000343060 IL5RAQ01344 420 aa9.52□□□□□ -0.88
HOXA1-201ENST00000343060 ZNF45Q02386 682 aa9.52□□□□□ -0.88
HOXA1-201ENST00000343060 VAC14Q08AM6 782 aa9.52□□□□□ -0.88
HOXA1-201ENST00000343060 LAPTM5Q13571 262 aa9.52□□□□□ -0.88
HOXA1-201ENST00000343060 GBX1Q14549 363 aa9.52□□□□□ -0.88
HOXA1-201ENST00000343060 PCSK7Q16549 785 aa9.52□□□□□ -0.88
HOXA1-201ENST00000343060 PLEKHG6Q3KR16 790 aa9.52□□□□□ -0.88
HOXA1-201ENST00000343060 ATP6AP1LQ52LC2 224 aa9.52□□□□□ -0.88
HOXA1-201ENST00000343060 MARCH8Q5T0T0 291 aa9.52□□□□□ -0.88
HOXA1-201ENST00000343060 DDX59Q5T1V6 619 aaKnown RBP eCLIP9.52□□□□□ -0.88
HOXA1-201ENST00000343060 IL31Q6EBC2 164 aa9.52□□□□□ -0.88
HOXA1-201ENST00000343060 DESI1Q6ICB0 168 aa9.52□□□□□ -0.88
HOXA1-201ENST00000343060 CES5AQ6NT32 575 aa9.52□□□□□ -0.88
HOXA1-201ENST00000343060 GPR149Q86SP6 731 aa9.52□□□□□ -0.88
HOXA1-201ENST00000343060 RYBPQ8N488 228 aaPredicted RBP9.52□□□□□ -0.88
HOXA1-201ENST00000343060 FIG4Q92562 907 aa9.52□□□□□ -0.88
HOXA1-201ENST00000343060 RPL3LQ92901 407 aaKnown RBP9.52□□□□□ -0.88
HOXA1-201ENST00000343060 ZHX1-C8orf76Q96EF9 292 aa9.52□□□□□ -0.88
HOXA1-201ENST00000343060 DCSTAMPQ9H295 470 aa9.52□□□□□ -0.88
HOXA1-201ENST00000343060 FNIP2Q9P278 1114 aa9.52□□□□□ -0.88
HOXA1-201ENST00000343060 ADGRE2Q9UHX3 823 aa9.52□□□□□ -0.88
HOXA1-201ENST00000343060 IKZF3Q9UKT9 509 aa9.52□□□□□ -0.88
HOXA1-201ENST00000343060 ORC6Q9Y5N6 252 aa9.52□□□□□ -0.88
HOXA1-201ENST00000343060 LCHNA4D1U4 455 aa9.52□□□□□ -0.89
HOXA1-201ENST00000343060 OR51F1A6NGY5 319 aa9.52□□□□□ -0.89
HOXA1-201ENST00000343060 EFCAB9A8MZ26 197 aa9.52□□□□□ -0.89
HOXA1-201ENST00000343060 E9PQ18 207 aa9.52□□□□□ -0.89
HOXA1-201ENST00000343060 HAT1O14929 419 aa9.52□□□□□ -0.89
HOXA1-201ENST00000343060 TBX1O43435 398 aa9.52□□□□□ -0.89
HOXA1-201ENST00000343060 RGS10O43665 173 aa9.52□□□□□ -0.89
HOXA1-201ENST00000343060 SNX4O95219 450 aa9.52□□□□□ -0.89
HOXA1-201ENST00000343060 DLGAP3O95886 979 aa9.52□□□□□ -0.89
HOXA1-201ENST00000343060 PGK2P07205 417 aa9.52□□□□□ -0.89
HOXA1-201ENST00000343060 FMO3P31513 532 aa9.52□□□□□ -0.89
HOXA1-201ENST00000343060 MAGEA2P43356 314 aa9.52□□□□□ -0.89
HOXA1-201ENST00000343060 SCNN1GP51170 649 aa9.52□□□□□ -0.89
HOXA1-201ENST00000343060 RABGGTBP53611 331 aa9.52□□□□□ -0.89
HOXA1-201ENST00000343060 PCBP1Q15365 356 aaKnown RBP eCLIP9.52□□□□□ -0.89
HOXA1-201ENST00000343060 TYSND1Q2T9J0 566 aa9.52□□□□□ -0.89
HOXA1-201ENST00000343060 COLEC12Q5KU26 742 aa9.52□□□□□ -0.89
HOXA1-201ENST00000343060 BRMS1LQ5PSV4 323 aa9.52□□□□□ -0.89
HOXA1-201ENST00000343060 AGAP6Q5VW22 663 aa9.52□□□□□ -0.89
HOXA1-201ENST00000343060 WSCD1Q658N2 575 aa9.52□□□□□ -0.89
HOXA1-201ENST00000343060 TTC23LQ6PF05 361 aa9.52□□□□□ -0.89
HOXA1-201ENST00000343060 SHQ1Q6PI26 577 aaKnown RBP9.52□□□□□ -0.89
HOXA1-201ENST00000343060 Q6ZSR9 355 aa9.52□□□□□ -0.89
HOXA1-201ENST00000343060 DET1Q7L5Y6 550 aa9.52□□□□□ -0.89
HOXA1-201ENST00000343060 KDELC2Q7Z4H8 507 aa9.52□□□□□ -0.89
HOXA1-201ENST00000343060 CTU1Q7Z7A3 348 aaKnown RBP9.52□□□□□ -0.89
HOXA1-201ENST00000343060 PLPP6Q8IY26 295 aa9.52□□□□□ -0.89
HOXA1-201ENST00000343060 FNDC5Q8NAU1 212 aa9.52□□□□□ -0.89
HOXA1-201ENST00000343060 OR6P1Q8NGX9 317 aa9.52□□□□□ -0.89
HOXA1-201ENST00000343060 EDEM1Q92611 657 aa9.52□□□□□ -0.89
HOXA1-201ENST00000343060 PROX1Q92786 737 aa9.52□□□□□ -0.89
HOXA1-201ENST00000343060 SLC38A4Q969I6 547 aa9.52□□□□□ -0.89
HOXA1-201ENST00000343060 AGAP4Q96P64 663 aa9.52□□□□□ -0.89
HOXA1-201ENST00000343060 ZNF382Q96SR6 550 aa9.52□□□□□ -0.89
HOXA1-201ENST00000343060 C17orf80Q9BSJ5 609 aa9.52□□□□□ -0.89
HOXA1-201ENST00000343060 DCAF13Q9NV06 445 aaKnown RBP9.52□□□□□ -0.89
HOXA1-201ENST00000343060 RNF19AQ9NV58 838 aa9.52□□□□□ -0.89
HOXA1-201ENST00000343060 SCN3BQ9NY72 215 aa9.52□□□□□ -0.89
HOXA1-201ENST00000343060 CCDC59Q9P031 241 aaKnown RBP9.52□□□□□ -0.89
HOXA1-201ENST00000343060 LIMD1Q9UGP4 676 aa9.52□□□□□ -0.89
HOXA1-201ENST00000343060 RNF112Q9ULX5 631 aa9.52□□□□□ -0.89
HOXA1-201ENST00000343060 CRYL1Q9Y2S2 319 aa9.52□□□□□ -0.89
HOXA1-201ENST00000343060 AP3M1Q9Y2T2 418 aa9.52□□□□□ -0.89
HOXA1-201ENST00000343060 PTCH2Q9Y6C5 1203 aa9.52□□□□□ -0.89
HOXA1-201ENST00000343060 PLXNB2O15031 1838 aa9.52□□□□□ -0.89
HOXA1-201ENST00000343060 WASH4PA8MWX3 477 aa9.51□□□□□ -0.89
HOXA1-201ENST00000343060 GNGT2O14610 69 aa9.51□□□□□ -0.89
HOXA1-201ENST00000343060 IDH3BO43837 385 aa9.51□□□□□ -0.89
HOXA1-201ENST00000343060 PARNO95453 639 aaKnown RBP9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms