RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 PLEKHO2Q8TD55 490 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 DQX1Q8TE96 717 aaKnown RBP8.59□□□□□ -1.03
RTN3-202ENST00000339997 NKD1Q969G9 470 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 IRF2BPLQ9H1B7 796 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 MED28Q9H204 178 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 AKTIPQ9H8T0 292 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 ZNF232Q9UNY5 417 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 SQORQ9Y6N5 450 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 CXCR6O00574 342 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 SCGNO76038 276 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 VNN1O95497 513 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 C1RP00736 705 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 GBAP04062 536 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 ANXA4P09525 319 aaPredicted RBP8.58□□□□□ -1.04
RTN3-202ENST00000339997 PRKCHP24723 683 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 MYL9P24844 172 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 ELK4P28324 431 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 NTSP30990 170 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 IFNGR2P38484 337 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 ATP6V0D1P61421 351 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 RPL6Q02878 288 aaKnown RBP8.58□□□□□ -1.04
RTN3-202ENST00000339997 LCP2Q13094 533 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 ZMYND11Q15326 602 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 SOWAHAQ2M3V2 549 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 DDX59Q5T1V6 619 aaKnown RBP eCLIP8.58□□□□□ -1.04
RTN3-202ENST00000339997 HECTD3Q5T447 861 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 RBM20Q5T481 1227 aaKnown RBP8.58□□□□□ -1.04
RTN3-202ENST00000339997 TMEM236Q5W0B7 351 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 PHC2Q8IXK0 858 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 COLGALT2Q8IYK4 626 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 OR5AK3PQ8NH89 298 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 Q96MT0 163 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 CORO1BQ9BR76 489 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 YIPF4Q9BSR8 244 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 HERC2P3Q9BVR0 1158 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 POLR2J2Q9GZM3 115 aaKnown RBP8.58□□□□□ -1.04
RTN3-202ENST00000339997 SEMA3GQ9NS98 782 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 SPG21Q9NZD8 308 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 VPS51Q9UID3 782 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 PRELID1Q9Y255 219 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 DNMT3AQ9Y6K1 912 aaPredicted RBP8.58□□□□□ -1.04
RTN3-202ENST00000339997 CNTNAP1P78357 1384 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 CLUHO75153 1309 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 UPK3BL1B0FP48 263 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 SPATA31C2B4DYI2 1134 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 UPK3BL2E5RIL1 263 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 PSMD9O00233 223 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 NIPSNAP2O75323 286 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 EGFRP00533 1210 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 FABP3P05413 133 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 TPSB2P20231 275 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 OR1D2P34982 312 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 ARL3P36405 182 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 TPSAB1Q15661 275 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 TYSND1Q2T9J0 566 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 C9orf131Q5VYM1 1079 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 CLDN19Q8N6F1 224 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 C12orf50Q8NA57 414 aaPredicted RBP8.58□□□□□ -1.04
RTN3-202ENST00000339997 KAT8Q9H7Z6 458 aaKnown RBP8.58□□□□□ -1.04
RTN3-202ENST00000339997 TIGARQ9NQ88 270 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 GMIPQ9P107 970 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 PCDH10Q9P2E7 1040 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 SAMD4AQ9UPU9 718 aaKnown RBP8.58□□□□□ -1.04
RTN3-202ENST00000339997 CNTN6Q9UQ52 1028 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 TCAF2A6NFQ2 919 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 DLX3O60479 287 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 CSN2P05814 226 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 PBX3P40426 434 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 CLCNKBP51801 687 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 SCN1BQ07699 218 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 FAM171BQ6P995 826 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 CXXC5Q7LFL8 322 aaKnown RBP8.58□□□□□ -1.04
RTN3-202ENST00000339997 ZNF410Q86VK4 478 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 TDRPQ86YL5 185 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 FAM98AQ8NCA5 519 aaKnown RBP8.58□□□□□ -1.04
RTN3-202ENST00000339997 SLC35B2Q8TB61 432 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 TNFAIP8L1Q8WVP5 186 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 TMBIM1Q969X1 311 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 S100A13Q99584 98 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 CCNB1IP1Q9NPC3 277 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 CCDC59Q9P031 241 aaKnown RBP8.58□□□□□ -1.04
RTN3-202ENST00000339997 EIF3KQ9UBQ5 218 aaKnown RBP8.58□□□□□ -1.04
RTN3-202ENST00000339997 ADAMTS6Q9UKP5 1117 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 LRRC42Q9Y546 428 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 KCTD3Q9Y597 815 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 RAI2Q9Y5P3 530 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 CEP350Q5VT06 3117 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 I3L521 148 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 SLC28A1O00337 649 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 ARPC2O15144 300 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 CH25HO95992 272 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 ASLP04424 464 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 SSR2P43308 183 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 MCCD1P59942 119 aaPredicted RBP8.58□□□□□ -1.04
RTN3-202ENST00000339997 TXNL4AP83876 142 aaKnown RBP8.58□□□□□ -1.04
RTN3-202ENST00000339997 MBTD1Q05BQ5 628 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 ELP6Q0PNE2 266 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 CHIT1Q13231 466 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 ZNF730Q6ZMV8 503 aa8.58□□□□□ -1.04
RTN3-202ENST00000339997 ZNF598Q86UK7 904 aaKnown RBP8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms