RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 PCDHB9Q9Y5E1 797 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 A0A0X1KG70 313 aa11.36□□□□□ -0.59
VPS39-201ENST00000318006 AP3D1O14617 1153 aa11.36□□□□□ -0.59
VPS39-201ENST00000318006 CLDN11O75508 207 aa11.36□□□□□ -0.59
VPS39-201ENST00000318006 AQP1P29972 269 aa11.36□□□□□ -0.59
VPS39-201ENST00000318006 L1CAMP32004 1257 aa11.36□□□□□ -0.59
VPS39-201ENST00000318006 DCDC1P59894 354 aa11.36□□□□□ -0.59
VPS39-201ENST00000318006 TGFBIQ15582 683 aa11.36□□□□□ -0.59
VPS39-201ENST00000318006 SWI5Q1ZZU3 235 aa11.36□□□□□ -0.59
VPS39-201ENST00000318006 OTOP3Q7RTS5 596 aa11.36□□□□□ -0.59
VPS39-201ENST00000318006 COMMD2Q86X83 199 aa11.36□□□□□ -0.59
VPS39-201ENST00000318006 FIBCD1Q8N539 461 aa11.36□□□□□ -0.59
VPS39-201ENST00000318006 POMGNT2Q8NAT1 580 aa11.36□□□□□ -0.59
VPS39-201ENST00000318006 ISOC1Q96CN7 298 aa11.36□□□□□ -0.59
VPS39-201ENST00000318006 ABCG8Q9H221 673 aa11.36□□□□□ -0.59
VPS39-201ENST00000318006 AGO3Q9H9G7 860 aaKnown RBP11.36□□□□□ -0.59
VPS39-201ENST00000318006 AASSQ9UDR5 926 aa11.36□□□□□ -0.59
VPS39-201ENST00000318006 MOXD2PA6NHM9 499 aa11.36□□□□□ -0.59
VPS39-201ENST00000318006 CXCR6O00574 342 aa11.36□□□□□ -0.59
VPS39-201ENST00000318006 SELPP16109 830 aa11.36□□□□□ -0.59
VPS39-201ENST00000318006 RHOQP17081 205 aa11.36□□□□□ -0.59
VPS39-201ENST00000318006 SP2Q02086 613 aa11.36□□□□□ -0.59
VPS39-201ENST00000318006 PARP15Q460N3 678 aa11.36□□□□□ -0.59
VPS39-201ENST00000318006 ZDHHC21Q8IVQ6 265 aa11.36□□□□□ -0.59
VPS39-201ENST00000318006 CLHC1Q8NHS4 586 aa11.36□□□□□ -0.59
VPS39-201ENST00000318006 ARL5CA6NH57 179 aa11.36□□□□□ -0.59
VPS39-201ENST00000318006 ACOX3O15254 700 aa11.36□□□□□ -0.59
VPS39-201ENST00000318006 UGT2B17O75795 530 aa11.36□□□□□ -0.59
VPS39-201ENST00000318006 TMEM63AO94886 807 aa11.36□□□□□ -0.59
VPS39-201ENST00000318006 UROSP10746 265 aa11.36□□□□□ -0.59
VPS39-201ENST00000318006 GTF2E2P29084 291 aaKnown RBP11.36□□□□□ -0.59
VPS39-201ENST00000318006 GPD2P43304 727 aa11.36□□□□□ -0.59
VPS39-201ENST00000318006 RHDQ02161 417 aa11.36□□□□□ -0.59
VPS39-201ENST00000318006 CLCQ05315 142 aa11.36□□□□□ -0.59
VPS39-201ENST00000318006 DNASE1L3Q13609 305 aa11.36□□□□□ -0.59
VPS39-201ENST00000318006 WSCD2Q2TBF2 565 aa11.36□□□□□ -0.59
VPS39-201ENST00000318006 PLEKHG4Q58EX7 1191 aa11.36□□□□□ -0.59
VPS39-201ENST00000318006 CYP2U1Q7Z449 544 aa11.36□□□□□ -0.59
VPS39-201ENST00000318006 TNFAIP8L1Q8WVP5 186 aa11.36□□□□□ -0.59
VPS39-201ENST00000318006 GBA3Q9H227 469 aa11.36□□□□□ -0.59
VPS39-201ENST00000318006 MYBPHLA2RUH7 354 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 WWP2O00308 870 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 PRAMEF1O95521 474 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 COL6A1P12109 1028 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 CDH1P12830 882 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 CCNCP24863 283 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 LMO2P25791 158 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 PTX3P26022 381 aaPredicted RBP11.35□□□□□ -0.59
VPS39-201ENST00000318006 VBP1P61758 197 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 CD83Q01151 205 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 PFKPQ01813 784 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 SNAPC1Q16533 368 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 XKR6Q5GH73 641 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 GPR158Q5T848 1215 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 CPTPQ5TA50 214 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 DCAF12L1Q5VU92 463 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 TRMT10BQ6PF06 316 aaKnown RBP11.35□□□□□ -0.59
VPS39-201ENST00000318006 KLHL24Q6TFL4 600 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 CFAP52Q8N1V2 620 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 PYROXD2Q8N2H3 581 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 GPR156Q8NFN8 814 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 OR4A15Q8NGL6 344 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 OR10A6Q8NH74 314 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 POF1BQ8WVV4 589 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 ITPKCQ96DU7 683 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 MFSD3Q96ES6 412 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 PPP1R16AQ96I34 528 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 S100A13Q99584 98 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 NFKBIZQ9BYH8 718 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 PAK6Q9NQU5 681 aaPredicted RBP11.35□□□□□ -0.59
VPS39-201ENST00000318006 TBC1D24Q9ULP9 559 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 TBC1D3BA6NDS4 549 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 E9PAM4 449 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 SEPT4O43236 478 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 ONECUT3O60422 494 aaPredicted RBP11.35□□□□□ -0.59
VPS39-201ENST00000318006 CYP11A1P05108 521 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 FMO3P31513 532 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 EEFSECP57772 596 aaKnown RBP11.35□□□□□ -0.59
VPS39-201ENST00000318006 YBEYP58557 167 aaPredicted RBP11.35□□□□□ -0.59
VPS39-201ENST00000318006 DAOAP59103 153 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 ARHGAP1Q07960 439 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 LYPLAL1Q5VWZ2 237 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 TAPT1Q6NXT6 567 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 USP30Q70CQ3 517 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 PHC2Q8IXK0 858 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 NIPA2Q8N8Q9 360 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 ASCC1Q8N9N2 400 aaKnown RBP11.35□□□□□ -0.59
VPS39-201ENST00000318006 RNASE11Q8TAA1 199 aaKnown RBP11.35□□□□□ -0.59
VPS39-201ENST00000318006 PCDH19Q8TAB3 1148 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 STON2Q8WXE9 905 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 MED11Q9P086 117 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 CLEC4AQ9UMR7 237 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 BCAS2O75934 225 aaPredicted RBP11.35□□□□□ -0.59
VPS39-201ENST00000318006 EIF2B5Q13144 721 aaKnown RBP11.35□□□□□ -0.59
VPS39-201ENST00000318006 GPAT3Q53EU6 434 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 ZNF773Q6PK81 442 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 DOK6Q6PKX4 331 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 ADGRG6Q86SQ4 1221 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 CACUL1Q86Y37 369 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 SPAG16Q8N0X2 631 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms