RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 FAM151BQ6UXP7 276 aa14.4□□□□□ -0.1
CCDC88B-201ENST00000301897 CERS6Q6ZMG9 384 aa14.4□□□□□ -0.1
CCDC88B-201ENST00000301897 FAM83HQ6ZRV2 1179 aaPredicted RBP14.4□□□□□ -0.1
CCDC88B-201ENST00000301897 TTC30BQ8N4P2 665 aa14.4□□□□□ -0.1
CCDC88B-201ENST00000301897 CLIP3Q96DZ5 547 aa14.4□□□□□ -0.1
CCDC88B-201ENST00000301897 C12orf66Q96MD2 445 aa14.4□□□□□ -0.1
CCDC88B-201ENST00000301897 C1GALT1Q9NS00 363 aa14.4□□□□□ -0.1
CCDC88B-201ENST00000301897 MAP10Q9P2G4 905 aa14.4□□□□□ -0.1
CCDC88B-201ENST00000301897 SLC24A2Q9UI40 661 aa14.4□□□□□ -0.1
CCDC88B-201ENST00000301897 NENFQ9UMX5 172 aa14.4□□□□□ -0.1
CCDC88B-201ENST00000301897 POLEQ07864 2286 aa14.4□□□□□ -0.1
CCDC88B-201ENST00000301897 C3orf70A6NLC5 250 aaPredicted RBP14.39□□□□□ -0.11
CCDC88B-201ENST00000301897 OR2AG2A6NM03 316 aa14.39□□□□□ -0.11
CCDC88B-201ENST00000301897 TCP11X1B4DZS4 312 aa14.39□□□□□ -0.11
CCDC88B-201ENST00000301897 C9J4A7 227 aa14.39□□□□□ -0.11
CCDC88B-201ENST00000301897 IGHEP01854 428 aa14.39□□□□□ -0.11
CCDC88B-201ENST00000301897 HBQ1P09105 142 aa14.39□□□□□ -0.11
CCDC88B-201ENST00000301897 HLA-DPA1P20036 260 aa14.39□□□□□ -0.11
CCDC88B-201ENST00000301897 CYP2A7P20853 494 aa14.39□□□□□ -0.11
CCDC88B-201ENST00000301897 PTPN3P26045 913 aa14.39□□□□□ -0.11
CCDC88B-201ENST00000301897 AKT1P31749 480 aa14.39□□□□□ -0.11
CCDC88B-201ENST00000301897 ARHGAP25P42331 645 aa14.39□□□□□ -0.11
CCDC88B-201ENST00000301897 KPNA2P52292 529 aaKnown RBP14.39□□□□□ -0.11
CCDC88B-201ENST00000301897 WNT3AP56704 352 aa14.39□□□□□ -0.11
CCDC88B-201ENST00000301897 KRT33BQ14525 404 aa14.39□□□□□ -0.11
CCDC88B-201ENST00000301897 MESDQ14696 234 aa14.39□□□□□ -0.11
CCDC88B-201ENST00000301897 SLC18A3Q16572 532 aa14.39□□□□□ -0.11
CCDC88B-201ENST00000301897 EIF2S3LQ2VIR3 472 aaKnown RBP14.39□□□□□ -0.11
CCDC88B-201ENST00000301897 GPRC6AQ5T6X5 926 aa14.39□□□□□ -0.11
CCDC88B-201ENST00000301897 VWA5B1Q5TIE3 1220 aa14.39□□□□□ -0.11
CCDC88B-201ENST00000301897 LRRC38Q5VT99 294 aa14.39□□□□□ -0.11
CCDC88B-201ENST00000301897 GLT6D1Q7Z4J2 308 aa14.39□□□□□ -0.11
CCDC88B-201ENST00000301897 RAB43Q86YS6 212 aa14.39□□□□□ -0.11
CCDC88B-201ENST00000301897 RFX6Q8HWS3 928 aa14.39□□□□□ -0.11
CCDC88B-201ENST00000301897 IQCKQ8N0W5 287 aa14.39□□□□□ -0.11
CCDC88B-201ENST00000301897 SLC38A9Q8NBW4 561 aa14.39□□□□□ -0.11
CCDC88B-201ENST00000301897 FDCSPQ8NFU4 85 aa14.39□□□□□ -0.11
CCDC88B-201ENST00000301897 CPLX3Q8WVH0 158 aa14.39□□□□□ -0.11
CCDC88B-201ENST00000301897 INSM2Q96T92 566 aaPredicted RBP14.39□□□□□ -0.11
CCDC88B-201ENST00000301897 SMAD5Q99717 465 aaKnown RBP14.39□□□□□ -0.11
CCDC88B-201ENST00000301897 C17orf62Q9BQA9 187 aa14.39□□□□□ -0.11
CCDC88B-201ENST00000301897 CCM2Q9BSQ5 444 aa14.39□□□□□ -0.11
CCDC88B-201ENST00000301897 DHRS4Q9BTZ2 278 aa14.39□□□□□ -0.11
CCDC88B-201ENST00000301897 WWP1Q9H0M0 922 aa14.39□□□□□ -0.11
CCDC88B-201ENST00000301897 UBP1Q9NZI7 540 aa14.39□□□□□ -0.11
CCDC88B-201ENST00000301897 SERTAD3Q9UJW9 196 aa14.39□□□□□ -0.11
CCDC88B-201ENST00000301897 PADI2Q9Y2J8 665 aa14.39□□□□□ -0.11
CCDC88B-201ENST00000301897 CFAP20Q9Y6A4 193 aaKnown RBP14.39□□□□□ -0.11
CCDC88B-201ENST00000301897 TEP1Q99973 2627 aaKnown RBP14.39□□□□□ -0.11
CCDC88B-201ENST00000301897 A1L4Q6 167 aa14.38□□□□□ -0.11
CCDC88B-201ENST00000301897 ZNF185O15231 689 aa14.38□□□□□ -0.11
CCDC88B-201ENST00000301897 UGT1A9O60656 530 aa14.38□□□□□ -0.11
CCDC88B-201ENST00000301897 ALPPP05187 535 aa14.38□□□□□ -0.11
CCDC88B-201ENST00000301897 TMEM253P0C7T8 217 aa14.38□□□□□ -0.11
CCDC88B-201ENST00000301897 UGT1A6P19224 532 aa14.38□□□□□ -0.11
CCDC88B-201ENST00000301897 CDH3P22223 829 aa14.38□□□□□ -0.11
CCDC88B-201ENST00000301897 UGT1A1P22309 533 aa14.38□□□□□ -0.11
CCDC88B-201ENST00000301897 UGT1A4P22310 534 aa14.38□□□□□ -0.11
CCDC88B-201ENST00000301897 PBLDP30039 288 aaPredicted RBP14.38□□□□□ -0.11
CCDC88B-201ENST00000301897 RORAP35398 523 aa14.38□□□□□ -0.11
CCDC88B-201ENST00000301897 UBASH3AP57075 661 aa14.38□□□□□ -0.11
CCDC88B-201ENST00000301897 FANCCQ00597 558 aa14.38□□□□□ -0.11
CCDC88B-201ENST00000301897 GSE1Q14687 1217 aa14.38□□□□□ -0.11
CCDC88B-201ENST00000301897 PRKD1Q15139 912 aaPredicted RBP14.38□□□□□ -0.11
CCDC88B-201ENST00000301897 SIRPB2Q5JXA9 342 aa14.38□□□□□ -0.11
CCDC88B-201ENST00000301897 FNBP1LQ5T0N5 605 aa14.38□□□□□ -0.11
CCDC88B-201ENST00000301897 SYTL1Q8IYJ3 562 aa14.38□□□□□ -0.11
CCDC88B-201ENST00000301897 Q8NA96 180 aa14.38□□□□□ -0.11
CCDC88B-201ENST00000301897 OR2L2Q8NH16 312 aa14.38□□□□□ -0.11
CCDC88B-201ENST00000301897 PRR7Q8TB68 274 aa14.38□□□□□ -0.11
CCDC88B-201ENST00000301897 TFB1MQ8WVM0 346 aaKnown RBP14.38□□□□□ -0.11
CCDC88B-201ENST00000301897 SGSM3Q96HU1 749 aa14.38□□□□□ -0.11
CCDC88B-201ENST00000301897 VAT1Q99536 393 aa14.38□□□□□ -0.11
CCDC88B-201ENST00000301897 NUDT9Q9BW91 350 aa14.38□□□□□ -0.11
CCDC88B-201ENST00000301897 MFRPQ9BY79 579 aa14.38□□□□□ -0.11
CCDC88B-201ENST00000301897 ACTR5Q9H9F9 607 aaPredicted RBP14.38□□□□□ -0.11
CCDC88B-201ENST00000301897 UGT1A7Q9HAW7 530 aa14.38□□□□□ -0.11
CCDC88B-201ENST00000301897 UGT1A10Q9HAW8 530 aa14.38□□□□□ -0.11
CCDC88B-201ENST00000301897 UGT1A8Q9HAW9 530 aa14.38□□□□□ -0.11
CCDC88B-201ENST00000301897 DDX56Q9NY93 547 aaKnown RBP14.38□□□□□ -0.11
CCDC88B-201ENST00000301897 POMT2Q9UKY4 750 aa14.38□□□□□ -0.11
CCDC88B-201ENST00000301897 PIKFYVEQ9Y2I7 2098 aa14.38□□□□□ -0.11
CCDC88B-201ENST00000301897 WIPF3A6NGB9 483 aa14.37□□□□□ -0.11
CCDC88B-201ENST00000301897 TMEM150CB9EJG8 249 aa14.37□□□□□ -0.11
CCDC88B-201ENST00000301897 STX7O15400 261 aaKnown RBP14.37□□□□□ -0.11
CCDC88B-201ENST00000301897 KRT1P04264 644 aa14.37□□□□□ -0.11
CCDC88B-201ENST00000301897 CD63P08962 238 aa14.37□□□□□ -0.11
CCDC88B-201ENST00000301897 RALBP11234 206 aa14.37□□□□□ -0.11
CCDC88B-201ENST00000301897 POLR2CP19387 275 aaPredicted RBP14.37□□□□□ -0.11
CCDC88B-201ENST00000301897 AGXTP21549 392 aa14.37□□□□□ -0.11
CCDC88B-201ENST00000301897 HNRNPH3P31942 346 aaKnown RBP14.37□□□□□ -0.11
CCDC88B-201ENST00000301897 HADHAP40939 763 aa14.37□□□□□ -0.11
CCDC88B-201ENST00000301897 PREPP48147 710 aa14.37□□□□□ -0.11
CCDC88B-201ENST00000301897 ITGA1P56199 1179 aa14.37□□□□□ -0.11
CCDC88B-201ENST00000301897 MRPL49Q13405 166 aaKnown RBP14.37□□□□□ -0.11
CCDC88B-201ENST00000301897 TFDP2Q14188 446 aa14.37□□□□□ -0.11
CCDC88B-201ENST00000301897 NCF4Q15080 339 aa14.37□□□□□ -0.11
CCDC88B-201ENST00000301897 SLC1A5Q15758 541 aa14.37□□□□□ -0.11
CCDC88B-201ENST00000301897 BCL7AQ4VC05 210 aa14.37□□□□□ -0.11
CCDC88B-201ENST00000301897 KDELC1Q6UW63 502 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms