RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 FADS3Q9Y5Q0 445 aa16.2■□□□□ 0.18
USP4-201ENST00000265560 PLXNA2O75051 1894 aa16.2■□□□□ 0.18
USP4-201ENST00000265560 C9JVG2 144 aa16.2■□□□□ 0.18
USP4-201ENST00000265560 TAPBPO15533 448 aa16.2■□□□□ 0.18
USP4-201ENST00000265560 CRCPO75575 148 aa16.2■□□□□ 0.18
USP4-201ENST00000265560 OR4F21O95013 312 aa16.2■□□□□ 0.18
USP4-201ENST00000265560 KLF8O95600 359 aaPredicted RBP16.2■□□□□ 0.18
USP4-201ENST00000265560 NFKBIAP25963 317 aa16.2■□□□□ 0.18
USP4-201ENST00000265560 MXRA7P84157 204 aa16.2■□□□□ 0.18
USP4-201ENST00000265560 DSG4Q86SJ6 1040 aa16.2■□□□□ 0.18
USP4-201ENST00000265560 LONP2Q86WA8 852 aa16.2■□□□□ 0.18
USP4-201ENST00000265560 TEX9Q8N6V9 391 aa16.2■□□□□ 0.18
USP4-201ENST00000265560 IL17RCQ8NAC3 791 aa16.2■□□□□ 0.18
USP4-201ENST00000265560 ULK4Q96C45 1275 aa16.2■□□□□ 0.18
USP4-201ENST00000265560 CLPTM1LQ96KA5 538 aa16.2■□□□□ 0.18
USP4-201ENST00000265560 PANX3Q96QZ0 392 aa16.2■□□□□ 0.18
USP4-201ENST00000265560 LGR4Q9BXB1 951 aa16.2■□□□□ 0.18
USP4-201ENST00000265560 KCTD5Q9NXV2 234 aa16.2■□□□□ 0.18
USP4-201ENST00000265560 E2F3O00716 465 aa16.19■□□□□ 0.18
USP4-201ENST00000265560 ELP6Q0PNE2 266 aa16.19■□□□□ 0.18
USP4-201ENST00000265560 CRY1Q16526 586 aa16.19■□□□□ 0.18
USP4-201ENST00000265560 ZDHHC20Q5W0Z9 365 aa16.19■□□□□ 0.18
USP4-201ENST00000265560 ADAMTSL2Q86TH1 951 aa16.19■□□□□ 0.18
USP4-201ENST00000265560 SLC44A3Q8N4M1 653 aa16.19■□□□□ 0.18
USP4-201ENST00000265560 ATP6V1E2Q96A05 226 aa16.19■□□□□ 0.18
USP4-201ENST00000265560 TUBB1Q9H4B7 451 aa16.19■□□□□ 0.18
USP4-201ENST00000265560 FZD3Q9NPG1 666 aa16.19■□□□□ 0.18
USP4-201ENST00000265560 ARL15Q9NXU5 204 aa16.19■□□□□ 0.18
USP4-201ENST00000265560 ZFC3H1O60293 1989 aaKnown RBP16.19■□□□□ 0.18
USP4-201ENST00000265560 RGSL1A5PLK6 1076 aa16.19■□□□□ 0.18
USP4-201ENST00000265560 PIP5K1BO14986 540 aa16.19■□□□□ 0.18
USP4-201ENST00000265560 CD9P21926 228 aa16.19■□□□□ 0.18
USP4-201ENST00000265560 SLC25A3Q00325 362 aa16.19■□□□□ 0.18
USP4-201ENST00000265560 ZXDCQ2QGD7 858 aaPredicted RBP16.19■□□□□ 0.18
USP4-201ENST00000265560 AGBL4Q5VU57 503 aa16.19■□□□□ 0.18
USP4-201ENST00000265560 NUDT18Q6ZVK8 323 aa16.19■□□□□ 0.18
USP4-201ENST00000265560 ACAD11Q709F0 780 aa16.19■□□□□ 0.18
USP4-201ENST00000265560 UBE2R2Q712K3 238 aaPredicted RBP16.19■□□□□ 0.18
USP4-201ENST00000265560 TMPRSS6Q8IU80 811 aa16.19■□□□□ 0.18
USP4-201ENST00000265560 ATG10Q9H0Y0 220 aa16.19■□□□□ 0.18
USP4-201ENST00000265560 ARHGEF3Q9NR81 526 aa16.19■□□□□ 0.18
USP4-201ENST00000265560 FBXL12Q9NXK8 326 aa16.19■□□□□ 0.18
USP4-201ENST00000265560 OR1A2Q9Y585 309 aa16.19■□□□□ 0.18
USP4-201ENST00000265560 CKAP5Q14008 2032 aa16.19■□□□□ 0.18
USP4-201ENST00000265560 CFAP99D6REC4 459 aa16.19■□□□□ 0.18
USP4-201ENST00000265560 GYG2O15488 501 aa16.19■□□□□ 0.18
USP4-201ENST00000265560 RPIAP49247 311 aa16.19■□□□□ 0.18
USP4-201ENST00000265560 UGT3A2Q3SY77 523 aa16.19■□□□□ 0.18
USP4-201ENST00000265560 CCSMST1Q4G0I0 132 aa16.19■□□□□ 0.18
USP4-201ENST00000265560 RBM15BQ8NDT2 890 aaKnown RBP16.19■□□□□ 0.18
USP4-201ENST00000265560 OR14C36Q8NHC7 312 aa16.19■□□□□ 0.18
USP4-201ENST00000265560 MBNL1Q9NR56 388 aaKnown RBP16.19■□□□□ 0.18
USP4-201ENST00000265560 WWOXQ9NZC7 414 aa16.19■□□□□ 0.18
USP4-201ENST00000265560 PACSIN3Q9UKS6 424 aa16.19■□□□□ 0.18
USP4-201ENST00000265560 PDE10AQ9Y233 779 aa16.19■□□□□ 0.18
USP4-201ENST00000265560 SEC23IPQ9Y6Y8 1000 aaKnown RBP16.19■□□□□ 0.18
USP4-201ENST00000265560 ANHXE9PGG2 379 aa16.18■□□□□ 0.18
USP4-201ENST00000265560 AZIN1O14977 448 aa16.18■□□□□ 0.18
USP4-201ENST00000265560 MAGEC1O60732 1142 aa16.18■□□□□ 0.18
USP4-201ENST00000265560 RPS17P08708 135 aaKnown RBP16.18■□□□□ 0.18
USP4-201ENST00000265560 LCP2Q13094 533 aa16.18■□□□□ 0.18
USP4-201ENST00000265560 TTLL9Q3SXZ7 439 aa16.18■□□□□ 0.18
USP4-201ENST00000265560 DDHD1Q8NEL9 900 aa16.18■□□□□ 0.18
USP4-201ENST00000265560 AGAP11Q8TF27 550 aa16.18■□□□□ 0.18
USP4-201ENST00000265560 PDLIM5Q96HC4 596 aaKnown RBP16.18■□□□□ 0.18
USP4-201ENST00000265560 SIKE1Q9BRV8 207 aa16.18■□□□□ 0.18
USP4-201ENST00000265560 CADM1Q9BY67 442 aaKnown RBP16.18■□□□□ 0.18
USP4-201ENST00000265560 TM7SF3Q9NS93 570 aa16.18■□□□□ 0.18
USP4-201ENST00000265560 ATXN10Q9UBB4 475 aa16.18■□□□□ 0.18
USP4-201ENST00000265560 EPS15L1Q9UBC2 864 aa16.18■□□□□ 0.18
USP4-201ENST00000265560 GULP1Q9UBP9 304 aa16.18■□□□□ 0.18
USP4-201ENST00000265560 NDRG2Q9UN36 371 aaKnown RBP16.18■□□□□ 0.18
USP4-201ENST00000265560 FFAR3O14843 346 aa16.18■□□□□ 0.18
USP4-201ENST00000265560 RAD51BO15315 384 aa16.18■□□□□ 0.18
USP4-201ENST00000265560 GPR42O15529 346 aa16.18■□□□□ 0.18
USP4-201ENST00000265560 EIF2DP41214 584 aaKnown RBP16.18■□□□□ 0.18
USP4-201ENST00000265560 DCDC1P59894 354 aa16.18■□□□□ 0.18
USP4-201ENST00000265560 TFF2Q03403 129 aa16.18■□□□□ 0.18
USP4-201ENST00000265560 SPDYE1Q8NFV5 336 aaPredicted RBP16.18■□□□□ 0.18
USP4-201ENST00000265560 TWIST2Q8WVJ9 160 aa16.18■□□□□ 0.18
USP4-201ENST00000265560 RSPH9Q9H1X1 276 aaPredicted RBP16.18■□□□□ 0.18
USP4-201ENST00000265560 VTI1BQ9UEU0 232 aa16.18■□□□□ 0.18
USP4-201ENST00000265560 DENND4AQ7Z401 1863 aa16.17■□□□□ 0.18
USP4-201ENST00000265560 S100BP04271 92 aaPredicted RBP16.17■□□□□ 0.18
USP4-201ENST00000265560 HOXB2P14652 356 aa16.17■□□□□ 0.18
USP4-201ENST00000265560 COPAP53621 1224 aa16.17■□□□□ 0.18
USP4-201ENST00000265560 ERVPABLB-1P60509 514 aa16.17■□□□□ 0.18
USP4-201ENST00000265560 ELF3P78545 371 aaPredicted RBP16.17■□□□□ 0.18
USP4-201ENST00000265560 KLF10Q13118 480 aa16.17■□□□□ 0.18
USP4-201ENST00000265560 LETMD1Q6P1Q0 360 aa16.17■□□□□ 0.18
USP4-201ENST00000265560 CFAP206Q8IYR0 622 aa16.17■□□□□ 0.18
USP4-201ENST00000265560 OR9I1Q8NGQ6 314 aa16.17■□□□□ 0.18
USP4-201ENST00000265560 NRTNQ99748 197 aa16.17■□□□□ 0.18
USP4-201ENST00000265560 LRMDAQ9H2I8 198 aa16.17■□□□□ 0.18
USP4-201ENST00000265560 ZNHIT2Q9UHR6 403 aa16.17■□□□□ 0.18
USP4-201ENST00000265560 LATO43561 262 aa16.17■□□□□ 0.18
USP4-201ENST00000265560 RNASEH1O60930 286 aaKnown RBP16.17■□□□□ 0.18
USP4-201ENST00000265560 VCLP18206 1134 aa16.17■□□□□ 0.18
USP4-201ENST00000265560 CALB2P22676 271 aa16.17■□□□□ 0.18
USP4-201ENST00000265560 PTPN4P29074 926 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms