RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 MS4A13Q5J8X5 152 aa11.8□□□□□ -0.52
USHBP1-201ENST00000252597 FAM151BQ6UXP7 276 aa11.8□□□□□ -0.52
USHBP1-201ENST00000252597 HID1Q8IV36 788 aa11.8□□□□□ -0.52
USHBP1-201ENST00000252597 CCDC103Q8IW40 242 aa11.8□□□□□ -0.52
USHBP1-201ENST00000252597 EID3Q8N140 333 aa11.8□□□□□ -0.52
USHBP1-201ENST00000252597 POC5Q8NA72 575 aa11.8□□□□□ -0.52
USHBP1-201ENST00000252597 MYEOVQ96EZ4 313 aa11.8□□□□□ -0.52
USHBP1-201ENST00000252597 SERPINB11Q96P15 392 aa11.8□□□□□ -0.52
USHBP1-201ENST00000252597 MCMBPQ9BTE3 642 aa11.8□□□□□ -0.52
USHBP1-201ENST00000252597 TRIM54Q9BYV2 358 aa11.8□□□□□ -0.52
USHBP1-201ENST00000252597 HMG20AQ9NP66 347 aa11.8□□□□□ -0.52
USHBP1-201ENST00000252597 NDUFS2O75306 463 aa11.8□□□□□ -0.52
USHBP1-201ENST00000252597 AKT1P31749 480 aa11.8□□□□□ -0.52
USHBP1-201ENST00000252597 ALDH3A2P51648 485 aa11.8□□□□□ -0.52
USHBP1-201ENST00000252597 ABRAXAS2Q15018 415 aa11.8□□□□□ -0.52
USHBP1-201ENST00000252597 TAF12Q16514 161 aa11.8□□□□□ -0.52
USHBP1-201ENST00000252597 C6orf141Q5SZD1 244 aa11.8□□□□□ -0.52
USHBP1-201ENST00000252597 TTC23Q5W5X9 447 aa11.8□□□□□ -0.52
USHBP1-201ENST00000252597 TMEM53Q6P2H8 277 aa11.8□□□□□ -0.52
USHBP1-201ENST00000252597 PLEKHH3Q7Z736 793 aa11.8□□□□□ -0.52
USHBP1-201ENST00000252597 SLC22A16Q86VW1 577 aa11.8□□□□□ -0.52
USHBP1-201ENST00000252597 TMEM86AQ8N2M4 240 aa11.8□□□□□ -0.52
USHBP1-201ENST00000252597 OR4F6Q8NGB9 312 aa11.8□□□□□ -0.52
USHBP1-201ENST00000252597 PROKR1Q8TCW9 393 aa11.8□□□□□ -0.52
USHBP1-201ENST00000252597 RAB2BQ8WUD1 216 aa11.8□□□□□ -0.52
USHBP1-201ENST00000252597 SLC22A17Q8WUG5 538 aa11.8□□□□□ -0.52
USHBP1-201ENST00000252597 PYCR2Q96C36 320 aa11.8□□□□□ -0.52
USHBP1-201ENST00000252597 TSGA13Q96PP4 275 aa11.8□□□□□ -0.52
USHBP1-201ENST00000252597 FAM193BQ96PV7 902 aaPredicted RBP11.8□□□□□ -0.52
USHBP1-201ENST00000252597 AARSD1Q9BTE6 412 aaKnown RBP11.8□□□□□ -0.52
USHBP1-201ENST00000252597 CARS2Q9HA77 564 aaKnown RBP11.8□□□□□ -0.52
USHBP1-201ENST00000252597 CD320Q9NPF0 282 aa11.8□□□□□ -0.52
USHBP1-201ENST00000252597 MRGBPQ9NV56 204 aa11.8□□□□□ -0.52
USHBP1-201ENST00000252597 ATAD3AQ9NVI7 634 aa11.8□□□□□ -0.52
USHBP1-201ENST00000252597 POLR3BQ9NW08 1133 aaPredicted RBP11.8□□□□□ -0.52
USHBP1-201ENST00000252597 SEPT3Q9UH03 358 aa11.8□□□□□ -0.52
USHBP1-201ENST00000252597 ZNF232Q9UNY5 417 aa11.8□□□□□ -0.52
USHBP1-201ENST00000252597 C5orf42Q9H799 3197 aa11.79□□□□□ -0.52
USHBP1-201ENST00000252597 C2orf81A6NN90 581 aa11.79□□□□□ -0.52
USHBP1-201ENST00000252597 ZNF12P17014 697 aa11.79□□□□□ -0.52
USHBP1-201ENST00000252597 HPCAL1P37235 193 aa11.79□□□□□ -0.52
USHBP1-201ENST00000252597 RGRP47804 291 aa11.79□□□□□ -0.52
USHBP1-201ENST00000252597 IDH2P48735 452 aaKnown RBP11.79□□□□□ -0.52
USHBP1-201ENST00000252597 NUDT6P53370 316 aa11.79□□□□□ -0.52
USHBP1-201ENST00000252597 TAF10Q12962 218 aa11.79□□□□□ -0.52
USHBP1-201ENST00000252597 CRY1Q16526 586 aa11.79□□□□□ -0.52
USHBP1-201ENST00000252597 CCDC92Q53HC0 331 aaPredicted RBP11.79□□□□□ -0.52
USHBP1-201ENST00000252597 LDLRAD1Q5T700 205 aa11.79□□□□□ -0.52
USHBP1-201ENST00000252597 FAM117BQ6P1L5 589 aa11.79□□□□□ -0.52
USHBP1-201ENST00000252597 RBM23Q86U06 439 aaKnown RBP11.79□□□□□ -0.52
USHBP1-201ENST00000252597 FUBP1Q96AE4 644 aaKnown RBP11.79□□□□□ -0.52
USHBP1-201ENST00000252597 ZBED2Q9BTP6 218 aa11.79□□□□□ -0.52
USHBP1-201ENST00000252597 IKZF5Q9H5V7 419 aa11.79□□□□□ -0.52
USHBP1-201ENST00000252597 RMI1Q9H9A7 625 aa11.79□□□□□ -0.52
USHBP1-201ENST00000252597 GPBP1L1Q9HC44 474 aaPredicted RBP11.79□□□□□ -0.52
USHBP1-201ENST00000252597 FAM118AQ9NWS6 357 aa11.79□□□□□ -0.52
USHBP1-201ENST00000252597 PCDHB9Q9Y5E1 797 aa11.79□□□□□ -0.52
USHBP1-201ENST00000252597 PSMD11O00231 422 aa11.79□□□□□ -0.52
USHBP1-201ENST00000252597 AXIN1O15169 862 aa11.79□□□□□ -0.52
USHBP1-201ENST00000252597 ABCB7O75027 752 aa11.79□□□□□ -0.52
USHBP1-201ENST00000252597 SERPINB7O75635 380 aa11.79□□□□□ -0.52
USHBP1-201ENST00000252597 CYP7B1O75881 506 aa11.79□□□□□ -0.52
USHBP1-201ENST00000252597 MYO1DO94832 1006 aa11.79□□□□□ -0.52
USHBP1-201ENST00000252597 PGLSO95336 258 aa11.79□□□□□ -0.52
USHBP1-201ENST00000252597 TRPC1P48995 793 aa11.79□□□□□ -0.52
USHBP1-201ENST00000252597 TRIM32Q13049 653 aa11.79□□□□□ -0.52
USHBP1-201ENST00000252597 CTU2Q2VPK5 515 aaKnown RBP11.79□□□□□ -0.52
USHBP1-201ENST00000252597 COLEC12Q5KU26 742 aa11.79□□□□□ -0.52
USHBP1-201ENST00000252597 BHLHA9Q7RTU4 235 aa11.79□□□□□ -0.52
USHBP1-201ENST00000252597 LIX1Q8N485 282 aa11.79□□□□□ -0.52
USHBP1-201ENST00000252597 PACRGLQ8N7B6 248 aa11.79□□□□□ -0.52
USHBP1-201ENST00000252597 PTCD2Q8WV60 388 aaKnown RBP11.79□□□□□ -0.52
USHBP1-201ENST00000252597 ATOH8Q96SQ7 321 aa11.79□□□□□ -0.52
USHBP1-201ENST00000252597 RTP3Q9BQQ7 232 aa11.79□□□□□ -0.52
USHBP1-201ENST00000252597 CCSER2Q9H7U1 834 aa11.79□□□□□ -0.52
USHBP1-201ENST00000252597 AIG1Q9NVV5 245 aa11.79□□□□□ -0.52
USHBP1-201ENST00000252597 PTBP2Q9UKA9 531 aaKnown RBP11.79□□□□□ -0.52
USHBP1-201ENST00000252597 COL1A2P08123 1366 aa11.79□□□□□ -0.52
USHBP1-201ENST00000252597 KNL1Q8NG31 2342 aa11.79□□□□□ -0.52
USHBP1-201ENST00000252597 H0YJX3 145 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 TNPO2O14787 897 aaKnown RBP11.78□□□□□ -0.52
USHBP1-201ENST00000252597 BCKDKO14874 412 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 CHRM5P08912 532 aaPredicted RBP11.78□□□□□ -0.52
USHBP1-201ENST00000252597 GSTT2P0CG29 244 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 GSTT2BP0CG30 244 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 RAP2AP10114 183 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 UROSP10746 265 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 COL6A1P12109 1028 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 PFKLP17858 780 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 DCKP27707 260 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 STC1P52823 247 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 ERVK-8P63133 956 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 TP53BP2Q13625 1128 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 RAPSNQ13702 412 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 PDCD4Q53EL6 469 aaKnown RBP11.78□□□□□ -0.52
USHBP1-201ENST00000252597 KANK2Q63ZY3 851 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 TXNDC11Q6PKC3 985 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 CLIP4Q8N3C7 705 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 C2orf69Q8N8R5 385 aa11.78□□□□□ -0.52
USHBP1-201ENST00000252597 OR52J3Q8NH60 311 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms