RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 A8MT66 165 aa8.54□□□□□ -1.04
VPS4B-201ENST00000238497 CDC7O00311 574 aa8.54□□□□□ -1.04
VPS4B-201ENST00000238497 TPST1O60507 370 aa8.54□□□□□ -1.04
VPS4B-201ENST00000238497 PRAMEF11O60813 436 aa8.54□□□□□ -1.04
VPS4B-201ENST00000238497 TMCC1O94876 653 aa8.54□□□□□ -1.04
VPS4B-201ENST00000238497 MMP2P08253 660 aa8.54□□□□□ -1.04
VPS4B-201ENST00000238497 CES1P23141 567 aa8.54□□□□□ -1.04
VPS4B-201ENST00000238497 ATP5F1P24539 256 aaPredicted RBP8.54□□□□□ -1.04
VPS4B-201ENST00000238497 PIK3R1P27986 724 aa8.54□□□□□ -1.04
VPS4B-201ENST00000238497 ADRA1AP35348 466 aa8.54□□□□□ -1.04
VPS4B-201ENST00000238497 PEX19P40855 299 aa8.54□□□□□ -1.04
VPS4B-201ENST00000238497 CSNK1EP49674 416 aaKnown RBP8.54□□□□□ -1.04
VPS4B-201ENST00000238497 KPNA2P52292 529 aaKnown RBP8.54□□□□□ -1.04
VPS4B-201ENST00000238497 CDH4P55283 916 aa8.54□□□□□ -1.04
VPS4B-201ENST00000238497 RPS14P62263 151 aaKnown RBP8.54□□□□□ -1.04
VPS4B-201ENST00000238497 CAMK2GQ13555 558 aaPredicted RBP8.54□□□□□ -1.04
VPS4B-201ENST00000238497 CST6Q15828 149 aa8.54□□□□□ -1.04
VPS4B-201ENST00000238497 PTRHD1Q6GMV3 140 aaKnown RBP8.54□□□□□ -1.04
VPS4B-201ENST00000238497 KIAA0930Q6ICG6 404 aaPredicted RBP8.54□□□□□ -1.04
VPS4B-201ENST00000238497 CYS1Q717R9 158 aa8.54□□□□□ -1.04
VPS4B-201ENST00000238497 RAB44Q7Z6P3 723 aaPredicted RBP8.54□□□□□ -1.04
VPS4B-201ENST00000238497 GALNT4Q8N4A0 578 aa8.54□□□□□ -1.04
VPS4B-201ENST00000238497 DDX51Q8N8A6 666 aaKnown RBP eCLIP8.54□□□□□ -1.04
VPS4B-201ENST00000238497 SIDT2Q8NBJ9 832 aaKnown RBP8.54□□□□□ -1.04
VPS4B-201ENST00000238497 DEFB124Q8NES8 71 aa8.54□□□□□ -1.04
VPS4B-201ENST00000238497 NAF1Q96HR8 494 aaKnown RBP8.54□□□□□ -1.04
VPS4B-201ENST00000238497 PANX3Q96QZ0 392 aa8.54□□□□□ -1.04
VPS4B-201ENST00000238497 MRPL57Q9BQC6 102 aaKnown RBP8.54□□□□□ -1.04
VPS4B-201ENST00000238497 TMEM245Q9H330 911 aa8.54□□□□□ -1.04
VPS4B-201ENST00000238497 DYRK4Q9NR20 520 aa8.54□□□□□ -1.04
VPS4B-201ENST00000238497 NDE1Q9NXR1 346 aa8.54□□□□□ -1.04
VPS4B-201ENST00000238497 GALPQ9UBC7 116 aa8.54□□□□□ -1.04
VPS4B-201ENST00000238497 NPEPPSL1A6NEC2 478 aa8.54□□□□□ -1.04
VPS4B-201ENST00000238497 CLGNO14967 610 aa8.54□□□□□ -1.04
VPS4B-201ENST00000238497 MAP3K7O43318 606 aa8.54□□□□□ -1.04
VPS4B-201ENST00000238497 SMAD6O43541 496 aaKnown RBP8.54□□□□□ -1.04
VPS4B-201ENST00000238497 SNX2O60749 519 aa8.54□□□□□ -1.04
VPS4B-201ENST00000238497 IPO13O94829 963 aaKnown RBP8.54□□□□□ -1.04
VPS4B-201ENST00000238497 CRTAMO95727 393 aa8.54□□□□□ -1.04
VPS4B-201ENST00000238497 S1PR4O95977 384 aa8.54□□□□□ -1.04
VPS4B-201ENST00000238497 MRPS22P82650 360 aaKnown RBP8.54□□□□□ -1.04
VPS4B-201ENST00000238497 POU4F1Q01851 419 aa8.54□□□□□ -1.04
VPS4B-201ENST00000238497 SFSWAPQ12872 951 aaKnown RBP8.54□□□□□ -1.04
VPS4B-201ENST00000238497 TRIP10Q15642 601 aa8.54□□□□□ -1.04
VPS4B-201ENST00000238497 DNAL1Q4LDG9 190 aa8.54□□□□□ -1.04
VPS4B-201ENST00000238497 FRA10AC1Q70Z53 315 aa8.54□□□□□ -1.04
VPS4B-201ENST00000238497 ERMP1Q7Z2K6 904 aa8.54□□□□□ -1.04
VPS4B-201ENST00000238497 CUZD1Q86UP6 607 aa8.54□□□□□ -1.04
VPS4B-201ENST00000238497 C2CD4AQ8NCU7 369 aaPredicted RBP8.54□□□□□ -1.04
VPS4B-201ENST00000238497 SETD7Q8WTS6 366 aaKnown RBP8.54□□□□□ -1.04
VPS4B-201ENST00000238497 OR8D1Q8WZ84 308 aa8.54□□□□□ -1.04
VPS4B-201ENST00000238497 TSPAN17Q96FV3 270 aa8.54□□□□□ -1.04
VPS4B-201ENST00000238497 TNFRSF12AQ9NP84 129 aa8.54□□□□□ -1.04
VPS4B-201ENST00000238497 CD84Q9UIB8 345 aa8.54□□□□□ -1.04
VPS4B-201ENST00000238497 PPM1HQ9ULR3 514 aa8.54□□□□□ -1.04
VPS4B-201ENST00000238497 C1orf232A0A0U1RR37 186 aa8.54□□□□□ -1.04
VPS4B-201ENST00000238497 BCAT2O15382 392 aaPredicted RBP8.54□□□□□ -1.04
VPS4B-201ENST00000238497 LDB2O43679 373 aa8.54□□□□□ -1.04
VPS4B-201ENST00000238497 SH3BGRLO75368 114 aa8.54□□□□□ -1.04
VPS4B-201ENST00000238497 NDST3O95803 873 aa8.54□□□□□ -1.04
VPS4B-201ENST00000238497 PEX11BO96011 259 aa8.54□□□□□ -1.04
VPS4B-201ENST00000238497 SYPP08247 313 aa8.54□□□□□ -1.04
VPS4B-201ENST00000238497 SBK3P0C264 359 aa8.54□□□□□ -1.04
VPS4B-201ENST00000238497 AGTR2P50052 363 aa8.54□□□□□ -1.04
VPS4B-201ENST00000238497 YBEYP58557 167 aaPredicted RBP8.54□□□□□ -1.04
VPS4B-201ENST00000238497 BTKQ06187 659 aa8.54□□□□□ -1.04
VPS4B-201ENST00000238497 RALGDSQ12967 914 aa8.54□□□□□ -1.04
VPS4B-201ENST00000238497 RIPK1Q13546 671 aa8.54□□□□□ -1.04
VPS4B-201ENST00000238497 PLA2G2CQ5R387 149 aa8.54□□□□□ -1.04
VPS4B-201ENST00000238497 CXorf57Q6NSI4 855 aaKnown RBP8.54□□□□□ -1.04
VPS4B-201ENST00000238497 TMEM207Q6UWW9 146 aa8.54□□□□□ -1.04
VPS4B-201ENST00000238497 DSG4Q86SJ6 1040 aa8.54□□□□□ -1.04
VPS4B-201ENST00000238497 PIANPQ8IYJ0 282 aa8.54□□□□□ -1.04
VPS4B-201ENST00000238497 MINDY1Q8N5J2 469 aa8.54□□□□□ -1.04
VPS4B-201ENST00000238497 STYXQ8WUJ0 223 aa8.54□□□□□ -1.04
VPS4B-201ENST00000238497 PPWD1Q96BP3 646 aaKnown RBP8.54□□□□□ -1.04
VPS4B-201ENST00000238497 PILRBQ9UKJ0 227 aa8.54□□□□□ -1.04
VPS4B-201ENST00000238497 PKP3Q9Y446 797 aa8.54□□□□□ -1.04
VPS4B-201ENST00000238497 UBDO15205 165 aa8.53□□□□□ -1.04
VPS4B-201ENST00000238497 APOA4P06727 396 aa8.53□□□□□ -1.04
VPS4B-201ENST00000238497 AP2B1P63010 937 aa8.53□□□□□ -1.04
VPS4B-201ENST00000238497 FOXD4Q12950 439 aaPredicted RBP8.53□□□□□ -1.04
VPS4B-201ENST00000238497 MTA1Q13330 715 aa8.53□□□□□ -1.04
VPS4B-201ENST00000238497 NCEH1Q6PIU2 408 aa8.53□□□□□ -1.04
VPS4B-201ENST00000238497 LRRC74BQ6ZQY2 392 aa8.53□□□□□ -1.04
VPS4B-201ENST00000238497 LYSMD3Q7Z3D4 306 aa8.53□□□□□ -1.04
VPS4B-201ENST00000238497 CPNE9Q8IYJ1 553 aa8.53□□□□□ -1.04
VPS4B-201ENST00000238497 AFAP1L2Q8N4X5 818 aa8.53□□□□□ -1.04
VPS4B-201ENST00000238497 CEP76Q8TAP6 659 aa8.53□□□□□ -1.04
VPS4B-201ENST00000238497 BRSK1Q8TDC3 778 aa8.53□□□□□ -1.04
VPS4B-201ENST00000238497 KLK6Q92876 244 aa8.53□□□□□ -1.04
VPS4B-201ENST00000238497 MTFMTQ96DP5 389 aaKnown RBP8.53□□□□□ -1.04
VPS4B-201ENST00000238497 ZNF570Q96NI8 536 aa8.53□□□□□ -1.04
VPS4B-201ENST00000238497 C1orf50Q9BV19 199 aa8.53□□□□□ -1.04
VPS4B-201ENST00000238497 DRC3Q9H069 523 aa8.53□□□□□ -1.04
VPS4B-201ENST00000238497 TREX1Q9NSU2 369 aa8.53□□□□□ -1.04
VPS4B-201ENST00000238497 NMRK1Q9NWW6 199 aa8.53□□□□□ -1.04
VPS4B-201ENST00000238497 A0A1B0GVT2 93 aa8.53□□□□□ -1.04
VPS4B-201ENST00000238497 LRRC72A6NJI9 287 aa8.53□□□□□ -1.04
VPS4B-201ENST00000238497 NR5A2O00482 541 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms