RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 H7C4K7 107 aa18.43■□□□□ 0.54
CPSF3-201ENST00000238112 UPK1AO00322 258 aa18.43■□□□□ 0.54
CPSF3-201ENST00000238112 ANKRD28O15084 1053 aa18.43■□□□□ 0.54
CPSF3-201ENST00000238112 FFAR2O15552 330 aa18.43■□□□□ 0.54
CPSF3-201ENST00000238112 TSPAN3O60637 253 aa18.43■□□□□ 0.54
CPSF3-201ENST00000238112 SLC2A4P14672 509 aa18.43■□□□□ 0.54
CPSF3-201ENST00000238112 CORO1AP31146 461 aaKnown RBP18.43■□□□□ 0.54
CPSF3-201ENST00000238112 RTP2Q5QGT7 225 aa18.43■□□□□ 0.54
CPSF3-201ENST00000238112 CHST9Q7L1S5 443 aa18.43■□□□□ 0.54
CPSF3-201ENST00000238112 ITIH5Q86UX2 942 aa18.43■□□□□ 0.54
CPSF3-201ENST00000238112 ZDHHC13Q8IUH4 622 aa18.43■□□□□ 0.54
CPSF3-201ENST00000238112 OR2T12Q8NG77 320 aa18.43■□□□□ 0.54
CPSF3-201ENST00000238112 C2orf15Q8WU43 125 aaKnown RBP18.43■□□□□ 0.54
CPSF3-201ENST00000238112 NUDT8Q8WV74 236 aa18.43■□□□□ 0.54
CPSF3-201ENST00000238112 UGT2B28Q9BY64 529 aa18.43■□□□□ 0.54
CPSF3-201ENST00000238112 GPR63Q9BZJ6 419 aa18.43■□□□□ 0.54
CPSF3-201ENST00000238112 TMEM9Q9P0T7 183 aa18.43■□□□□ 0.54
CPSF3-201ENST00000238112 TMX2-CTNND1H3BSU7 103 aa18.42■□□□□ 0.54
CPSF3-201ENST00000238112 RSL1D1O76021 490 aaKnown RBP18.42■□□□□ 0.54
CPSF3-201ENST00000238112 PRSS23O95084 383 aa18.42■□□□□ 0.54
CPSF3-201ENST00000238112 GUCA1CO95843 209 aa18.42■□□□□ 0.54
CPSF3-201ENST00000238112 ALPLP05186 524 aa18.42■□□□□ 0.54
CPSF3-201ENST00000238112 RPL38P63173 70 aaKnown RBP18.42■□□□□ 0.54
CPSF3-201ENST00000238112 AAK1Q2M2I8 961 aa18.42■□□□□ 0.54
CPSF3-201ENST00000238112 SBSNQ6UWP8 590 aa18.42■□□□□ 0.54
CPSF3-201ENST00000238112 SLC13A3Q8WWT9 602 aa18.42■□□□□ 0.54
CPSF3-201ENST00000238112 MARCH5Q9NX47 278 aa18.42■□□□□ 0.54
CPSF3-201ENST00000238112 EIF3LQ9Y262 564 aaKnown RBP18.42■□□□□ 0.54
CPSF3-201ENST00000238112 ANKRD12Q6UB98 2062 aa18.42■□□□□ 0.54
CPSF3-201ENST00000238112 H0Y858 1186 aa18.41■□□□□ 0.54
CPSF3-201ENST00000238112 CPNE6O95741 557 aa18.41■□□□□ 0.54
CPSF3-201ENST00000238112 ARF5P84085 180 aa18.41■□□□□ 0.54
CPSF3-201ENST00000238112 HECTD3Q5T447 861 aa18.41■□□□□ 0.54
CPSF3-201ENST00000238112 BROXQ5VW32 411 aa18.41■□□□□ 0.54
CPSF3-201ENST00000238112 NCEH1Q6PIU2 408 aa18.41■□□□□ 0.54
CPSF3-201ENST00000238112 CHCHD4Q8N4Q1 142 aa18.41■□□□□ 0.54
CPSF3-201ENST00000238112 PDPRQ8NCN5 879 aa18.41■□□□□ 0.54
CPSF3-201ENST00000238112 PDZD8Q8NEN9 1154 aa18.41■□□□□ 0.54
CPSF3-201ENST00000238112 PLD4Q96BZ4 506 aa18.41■□□□□ 0.54
CPSF3-201ENST00000238112 CNDP2Q96KP4 475 aaKnown RBP18.41■□□□□ 0.54
CPSF3-201ENST00000238112 ZNF583Q96ND8 569 aa18.41■□□□□ 0.54
CPSF3-201ENST00000238112 CCDC115Q96NT0 180 aa18.41■□□□□ 0.54
CPSF3-201ENST00000238112 THUMPD3Q9BV44 507 aaKnown RBP18.41■□□□□ 0.54
CPSF3-201ENST00000238112 NAA50Q9GZZ1 169 aaKnown RBP18.41■□□□□ 0.54
CPSF3-201ENST00000238112 CLPBQ9H078 707 aa18.41■□□□□ 0.54
CPSF3-201ENST00000238112 NSUN3Q9H649 340 aaKnown RBP18.41■□□□□ 0.54
CPSF3-201ENST00000238112 TLR9Q9NR96 1032 aa18.41■□□□□ 0.54
CPSF3-201ENST00000238112 SMPD4Q9NXE4 827 aa18.41■□□□□ 0.54
CPSF3-201ENST00000238112 VAPAQ9P0L0 249 aa18.41■□□□□ 0.54
CPSF3-201ENST00000238112 NIPSNAP3AQ9UFN0 247 aaPredicted RBP18.41■□□□□ 0.54
CPSF3-201ENST00000238112 ZNF711Q9Y462 761 aa18.41■□□□□ 0.54
CPSF3-201ENST00000238112 ANGPTL3Q9Y5C1 460 aa18.41■□□□□ 0.54
CPSF3-201ENST00000238112 PCDHB9Q9Y5E1 797 aa18.41■□□□□ 0.54
CPSF3-201ENST00000238112 MAGEB3O15480 346 aa18.41■□□□□ 0.54
CPSF3-201ENST00000238112 COCHO43405 550 aa18.41■□□□□ 0.54
CPSF3-201ENST00000238112 RGS14O43566 566 aa18.41■□□□□ 0.54
CPSF3-201ENST00000238112 DFNA5O60443 496 aa18.41■□□□□ 0.54
CPSF3-201ENST00000238112 KLKB1P03952 638 aa18.41■□□□□ 0.54
CPSF3-201ENST00000238112 TCF3P15923 654 aa18.41■□□□□ 0.54
CPSF3-201ENST00000238112 MSH3P20585 1137 aa18.41■□□□□ 0.54
CPSF3-201ENST00000238112 AKT1P31749 480 aa18.41■□□□□ 0.54
CPSF3-201ENST00000238112 HSPA7P48741 367 aa18.41■□□□□ 0.54
CPSF3-201ENST00000238112 TRAF3Q13114 568 aa18.41■□□□□ 0.54
CPSF3-201ENST00000238112 FGD3Q5JSP0 725 aa18.41■□□□□ 0.54
CPSF3-201ENST00000238112 ELMSAN1Q6PJG2 1045 aa18.41■□□□□ 0.54
CPSF3-201ENST00000238112 TRAF7Q6Q0C0 670 aa18.41■□□□□ 0.54
CPSF3-201ENST00000238112 CERS6Q6ZMG9 384 aa18.41■□□□□ 0.54
CPSF3-201ENST00000238112 CIPCQ9C0C6 399 aa18.41■□□□□ 0.54
CPSF3-201ENST00000238112 IL17CQ9P0M4 197 aa18.41■□□□□ 0.54
CPSF3-201ENST00000238112 MAGED1Q9Y5V3 778 aaPredicted RBP18.41■□□□□ 0.54
CPSF3-201ENST00000238112 G3V2T6 193 aa18.4■□□□□ 0.54
CPSF3-201ENST00000238112 B4GAT1O43505 415 aa18.4■□□□□ 0.54
CPSF3-201ENST00000238112 TBC1D4O60343 1298 aa18.4■□□□□ 0.54
CPSF3-201ENST00000238112 FOXD2O60548 495 aaPredicted RBP18.4■□□□□ 0.54
CPSF3-201ENST00000238112 HPRP00739 348 aa18.4■□□□□ 0.54
CPSF3-201ENST00000238112 IRF1P10914 325 aa18.4■□□□□ 0.54
CPSF3-201ENST00000238112 PRKAR2AP13861 404 aaKnown RBP18.4■□□□□ 0.54
CPSF3-201ENST00000238112 ZNF7P17097 686 aaPredicted RBP18.4■□□□□ 0.54
CPSF3-201ENST00000238112 SHMT2P34897 504 aa18.4■□□□□ 0.54
CPSF3-201ENST00000238112 SLC11A1P49279 550 aa18.4■□□□□ 0.54
CPSF3-201ENST00000238112 RGS4P49798 205 aa18.4■□□□□ 0.54
CPSF3-201ENST00000238112 FAM117BQ6P1L5 589 aa18.4■□□□□ 0.54
CPSF3-201ENST00000238112 ANKS3Q6ZW76 656 aa18.4■□□□□ 0.54
CPSF3-201ENST00000238112 THAP5Q7Z6K1 395 aa18.4■□□□□ 0.54
CPSF3-201ENST00000238112 C8orf59Q8N0T1 100 aaPredicted RBP18.4■□□□□ 0.54
CPSF3-201ENST00000238112 OR13F1Q8NGS4 319 aa18.4■□□□□ 0.54
CPSF3-201ENST00000238112 FBXO30Q8TB52 745 aa18.4■□□□□ 0.54
CPSF3-201ENST00000238112 NRBF2Q96F24 287 aa18.4■□□□□ 0.54
CPSF3-201ENST00000238112 EGFL8Q99944 293 aa18.4■□□□□ 0.54
CPSF3-201ENST00000238112 ADNPQ9H2P0 1102 aa18.4■□□□□ 0.54
CPSF3-201ENST00000238112 GORASP2Q9H8Y8 452 aa18.4■□□□□ 0.54
CPSF3-201ENST00000238112 RRAGCQ9HB90 399 aa18.4■□□□□ 0.54
CPSF3-201ENST00000238112 FANCEQ9HB96 536 aa18.4■□□□□ 0.54
CPSF3-201ENST00000238112 TBC1D23Q9NUY8 699 aa18.4■□□□□ 0.54
CPSF3-201ENST00000238112 LIMD1Q9UGP4 676 aa18.4■□□□□ 0.54
CPSF3-201ENST00000238112 NT5C1B-RDH14C9J2C7 533 aa18.4■□□□□ 0.54
CPSF3-201ENST00000238112 STC2O76061 302 aa18.4■□□□□ 0.54
CPSF3-201ENST00000238112 MBL2P11226 248 aaPredicted RBP18.4■□□□□ 0.54
CPSF3-201ENST00000238112 ITGB6P18564 788 aa18.4■□□□□ 0.54
CPSF3-201ENST00000238112 TPD52P55327 224 aaPredicted RBP18.4■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms