RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 ARFGAP1Q8N6T3 406 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 ASB15Q8WXK1 588 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 OTUB1Q96FW1 271 aaPredicted RBP5.68□□□□□ -1.5
SCN1A-216ENST00000637968 NPAS1Q99742 590 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 KCNS3Q9BQ31 491 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 LXNQ9BS40 222 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 GPR88Q9GZN0 384 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 KCTD10Q9H3F6 313 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 LDAHQ9H6V9 325 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 LATS2Q9NRM7 1088 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 CCM2LQ9NUG4 571 aaPredicted RBP5.68□□□□□ -1.5
SCN1A-216ENST00000637968 PTTG3PQ9NZH4 202 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 BFARQ9NZS9 450 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 CCDC167Q9P0B6 97 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 NARFQ9UHQ1 456 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 PCDHGA9Q9Y5G4 932 aaKnown RBP5.68□□□□□ -1.5
SCN1A-216ENST00000637968 DCCP43146 1447 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 PTPRUQ92729 1446 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 FAM205AQ6ZU69 1335 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 CYP2D7A0A087X1C5 515 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 A0A1B0GTQ1 180 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 DBX1A6NMT0 343 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 PRSS47A8MTI9 375 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 K7ENM7 598 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 AGRPO00253 132 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 SULT1C2O00338 296 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 SIGLEC6O43699 453 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 LIASO43766 372 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 GREM1O60565 184 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 RECQL5O94762 991 aaPredicted RBP5.67□□□□□ -1.5
SCN1A-216ENST00000637968 SOX30O94993 753 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 UMPSP11172 480 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 HLA-EP13747 358 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 CD72P21854 359 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 DCDC1P59894 354 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 SEMA3BQ13214 749 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 ATP6AP1Q15904 470 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 ERFEQ4G0M1 354 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 FAM182AQ5T1J6 154 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 C10orf107Q8IVU9 208 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 MYCT1Q8N699 235 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 SLC20A1Q8WUM9 679 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 PGAP3Q96FM1 320 aaPredicted RBP5.67□□□□□ -1.5
SCN1A-216ENST00000637968 PIGSQ96S52 555 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 EIF2AK1Q9BQI3 630 aaKnown RBP5.67□□□□□ -1.5
SCN1A-216ENST00000637968 PAPOLGQ9BWT3 736 aaKnown RBP5.67□□□□□ -1.5
SCN1A-216ENST00000637968 GSX2Q9BZM3 304 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 C2orf40Q9H1Z8 148 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 WDR55Q9H6Y2 383 aaPredicted RBP5.67□□□□□ -1.5
SCN1A-216ENST00000637968 KLHL11Q9NVR0 708 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 SDHAF2Q9NX18 166 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 MIOXQ9UGB7 285 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 SLC23A1Q9UHI7 598 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 CLCA2Q9UQC9 943 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 PLEKHA6Q9Y2H5 1048 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 MTF2Q9Y483 593 aaPredicted RBP5.67□□□□□ -1.5
SCN1A-216ENST00000637968 RIMS1Q86UR5 1692 aaKnown RBP5.67□□□□□ -1.5
SCN1A-216ENST00000637968 SPATA31A1Q5TZJ5 1347 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 TEX13CA0A0J9YWL9 993 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 PQLC2LA1A4F0 135 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 MROH6A6NGR9 719 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 E9PI62 339 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 K7ERI5 159 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 UNC13BO14795 1591 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 SNNO75324 88 aaPredicted RBP5.67□□□□□ -1.5
SCN1A-216ENST00000637968 CDK14O94921 469 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 ITGB1P05556 798 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 C2P06681 752 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 SBK2P0C263 348 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 RNF224P0DH78 156 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 SYN1P17600 705 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 PREPP48147 710 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 PER3P56645 1201 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 SNAP25P60880 206 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 SLC3A1Q07837 685 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 FADDQ13158 208 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 DDR2Q16832 855 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 GPRC6AQ5T6X5 926 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 TMEM17Q86X19 198 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 CCDC71Q8IV32 467 aaPredicted RBP5.67□□□□□ -1.5
SCN1A-216ENST00000637968 ZNF276Q8N554 614 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 OR52K2Q8NGK3 314 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 WDR48Q8TAF3 677 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 CA5BP1Q8WTZ4 195 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 STON2Q8WXE9 905 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 CMTM3Q96MX0 182 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 NT5C1BQ96P26 610 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 RIT2Q99578 217 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 ITPAQ9BY32 194 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 FRMD8P1Q9BZ68 369 aaPredicted RBP5.67□□□□□ -1.5
SCN1A-216ENST00000637968 DNTTIP1Q9H147 329 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 SOX17Q9H6I2 414 aaPredicted RBP5.67□□□□□ -1.5
SCN1A-216ENST00000637968 DUS2Q9NX74 493 aaKnown RBP5.67□□□□□ -1.5
SCN1A-216ENST00000637968 SH3BGRL2Q9UJC5 107 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 PRKAB1Q9Y478 270 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 PCDHGA2Q9Y5H1 932 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 TNPO3Q9Y5L0 923 aaKnown RBP5.67□□□□□ -1.5
SCN1A-216ENST00000637968 PTCH2Q9Y6C5 1203 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 A3GALT2U3KPV4 340 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 BCL9LQ86UU0 1499 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms