RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 RUVBL2Q9Y230 463 aaKnown RBP13.23□□□□□ -0.29
LINC00540-202ENST00000616974 TEX264Q9Y6I9 313 aa13.23□□□□□ -0.29
LINC00540-202ENST00000616974 PCM1Q15154 2024 aa13.23□□□□□ -0.29
LINC00540-202ENST00000616974 KMT2BQ9UMN6 2715 aaPredicted RBP13.23□□□□□ -0.29
LINC00540-202ENST00000616974 CSF2RBP32927 897 aa13.22□□□□□ -0.29
LINC00540-202ENST00000616974 SLC1A2P43004 574 aa13.22□□□□□ -0.29
LINC00540-202ENST00000616974 WHAMMP3Q1A5X7 153 aa13.22□□□□□ -0.29
LINC00540-202ENST00000616974 HSP90AA5PQ58FG0 334 aa13.22□□□□□ -0.29
LINC00540-202ENST00000616974 ZNF470Q6ECI4 717 aa13.22□□□□□ -0.29
LINC00540-202ENST00000616974 KIAA0930Q6ICG6 404 aaPredicted RBP13.22□□□□□ -0.29
LINC00540-202ENST00000616974 SYDE1Q6ZW31 735 aaPredicted RBP13.22□□□□□ -0.29
LINC00540-202ENST00000616974 ZNF438Q7Z4V0 828 aa13.22□□□□□ -0.29
LINC00540-202ENST00000616974 SPRED1Q7Z699 444 aa13.22□□□□□ -0.29
LINC00540-202ENST00000616974 OTUD6BQ8N6M0 293 aa13.22□□□□□ -0.29
LINC00540-202ENST00000616974 KIF18AQ8NI77 898 aa13.22□□□□□ -0.29
LINC00540-202ENST00000616974 MAPK15Q8TD08 544 aa13.22□□□□□ -0.29
LINC00540-202ENST00000616974 DCUN1D1Q96GG9 259 aa13.22□□□□□ -0.29
LINC00540-202ENST00000616974 RMDN2Q96LZ7 410 aa13.22□□□□□ -0.29
LINC00540-202ENST00000616974 BIRC8Q96P09 236 aa13.22□□□□□ -0.29
LINC00540-202ENST00000616974 INSM2Q96T92 566 aaPredicted RBP13.22□□□□□ -0.29
LINC00540-202ENST00000616974 EBNA1BP2Q99848 306 aaKnown RBP13.22□□□□□ -0.29
LINC00540-202ENST00000616974 TIMM29Q9BSF4 260 aa13.22□□□□□ -0.29
LINC00540-202ENST00000616974 CIDEBQ9UHD4 219 aa13.22□□□□□ -0.29
LINC00540-202ENST00000616974 CACNA1GO43497 2377 aa13.22□□□□□ -0.29
LINC00540-202ENST00000616974 NIPSNAP2O75323 286 aa13.22□□□□□ -0.29
LINC00540-202ENST00000616974 RPLP0P05388 317 aaKnown RBP13.22□□□□□ -0.29
LINC00540-202ENST00000616974 HOXB3P14651 431 aaPredicted RBP13.22□□□□□ -0.29
LINC00540-202ENST00000616974 GABRB3P28472 473 aa13.22□□□□□ -0.29
LINC00540-202ENST00000616974 CCR7P32248 378 aa13.22□□□□□ -0.29
LINC00540-202ENST00000616974 EIF3BP55884 814 aaKnown RBP13.22□□□□□ -0.29
LINC00540-202ENST00000616974 PPP1CAP62136 330 aa13.22□□□□□ -0.29
LINC00540-202ENST00000616974 SARNPP82979 210 aaKnown RBP13.22□□□□□ -0.29
LINC00540-202ENST00000616974 PDIA2Q13087 525 aaKnown RBP13.22□□□□□ -0.29
LINC00540-202ENST00000616974 HIF1AQ16665 826 aa13.22□□□□□ -0.29
LINC00540-202ENST00000616974 BCL7AQ4VC05 210 aa13.22□□□□□ -0.29
LINC00540-202ENST00000616974 METRNLQ641Q3 311 aa13.22□□□□□ -0.29
LINC00540-202ENST00000616974 FBXO36Q8NEA4 188 aa13.22□□□□□ -0.29
LINC00540-202ENST00000616974 ULK4Q96C45 1275 aa13.22□□□□□ -0.29
LINC00540-202ENST00000616974 SLC30A3Q99726 388 aa13.22□□□□□ -0.29
LINC00540-202ENST00000616974 C19orf43Q9BQ61 176 aa13.22□□□□□ -0.29
LINC00540-202ENST00000616974 NUDT22Q9BRQ3 303 aa13.22□□□□□ -0.29
LINC00540-202ENST00000616974 WWP1Q9H0M0 922 aa13.22□□□□□ -0.29
LINC00540-202ENST00000616974 APOBEC2Q9Y235 224 aaKnown RBP13.22□□□□□ -0.29
LINC00540-202ENST00000616974 MED16Q9Y2X0 877 aa13.22□□□□□ -0.29
LINC00540-202ENST00000616974 ADAMTS20P59510 1910 aa13.21□□□□□ -0.29
LINC00540-202ENST00000616974 HEATR5BQ9P2D3 2071 aa13.21□□□□□ -0.29
LINC00540-202ENST00000616974 UBA6A0AVT1 1052 aaPredicted RBP13.21□□□□□ -0.29
LINC00540-202ENST00000616974 USP1O94782 785 aa13.21□□□□□ -0.29
LINC00540-202ENST00000616974 GLB1P16278 677 aa13.21□□□□□ -0.29
LINC00540-202ENST00000616974 UBE2IP63279 158 aaKnown RBP13.21□□□□□ -0.29
LINC00540-202ENST00000616974 GUCY2DQ02846 1103 aa13.21□□□□□ -0.29
LINC00540-202ENST00000616974 HHEXQ03014 270 aa13.21□□□□□ -0.29
LINC00540-202ENST00000616974 TARDBPQ13148 414 aaKnown RBP eCLIP13.21□□□□□ -0.29
LINC00540-202ENST00000616974 COL9A2Q14055 689 aaPredicted RBP13.21□□□□□ -0.29
LINC00540-202ENST00000616974 BOP1Q14137 746 aaKnown RBP13.21□□□□□ -0.29
LINC00540-202ENST00000616974 CHCHD2P9Q5T1J5 151 aaPredicted RBP13.21□□□□□ -0.29
LINC00540-202ENST00000616974 NEPROQ6NW34 567 aa13.21□□□□□ -0.29
LINC00540-202ENST00000616974 C8orf74Q6P047 294 aa13.21□□□□□ -0.29
LINC00540-202ENST00000616974 ZNF549Q6P9A3 640 aa13.21□□□□□ -0.29
LINC00540-202ENST00000616974 ZNF574Q6ZN55 896 aaPredicted RBP13.21□□□□□ -0.29
LINC00540-202ENST00000616974 NLRP9Q7RTR0 991 aa13.21□□□□□ -0.29
LINC00540-202ENST00000616974 CILP2Q8IUL8 1156 aa13.21□□□□□ -0.29
LINC00540-202ENST00000616974 PHC3Q8NDX5 983 aa13.21□□□□□ -0.29
LINC00540-202ENST00000616974 OR2L2Q8NH16 312 aa13.21□□□□□ -0.29
LINC00540-202ENST00000616974 LPGAT1Q92604 370 aa13.21□□□□□ -0.29
LINC00540-202ENST00000616974 RNF31Q96EP0 1072 aa13.21□□□□□ -0.29
LINC00540-202ENST00000616974 ZCCHC2Q9C0B9 1178 aaKnown RBP13.21□□□□□ -0.29
LINC00540-202ENST00000616974 P2RY12Q9H244 342 aa13.21□□□□□ -0.29
LINC00540-202ENST00000616974 COG4Q9H9E3 785 aa13.21□□□□□ -0.29
LINC00540-202ENST00000616974 SMYD2Q9NRG4 433 aa13.21□□□□□ -0.29
LINC00540-202ENST00000616974 IARS2Q9NSE4 1012 aaKnown RBP13.21□□□□□ -0.29
LINC00540-202ENST00000616974 C20orf96Q9NUD7 363 aaPredicted RBP13.21□□□□□ -0.29
LINC00540-202ENST00000616974 CPNE7Q9UBL6 633 aa13.21□□□□□ -0.29
LINC00540-202ENST00000616974 PSAT1Q9Y617 370 aa13.21□□□□□ -0.29
LINC00540-202ENST00000616974 FAM187AA6NFU0 413 aa13.21□□□□□ -0.3
LINC00540-202ENST00000616974 MGAT4DA6NG13 374 aa13.21□□□□□ -0.3
LINC00540-202ENST00000616974 GPR89AB7ZAQ6 455 aa13.21□□□□□ -0.3
LINC00540-202ENST00000616974 GPR89BP0CG08 455 aa13.21□□□□□ -0.3
LINC00540-202ENST00000616974 FMO4P31512 558 aa13.21□□□□□ -0.3
LINC00540-202ENST00000616974 NSG1P42857 185 aa13.21□□□□□ -0.3
LINC00540-202ENST00000616974 CNSTQ6PJW8 725 aa13.21□□□□□ -0.3
LINC00540-202ENST00000616974 MAATS1Q7Z4T9 603 aa13.21□□□□□ -0.3
LINC00540-202ENST00000616974 ZBED8Q8IZ13 594 aa13.21□□□□□ -0.3
LINC00540-202ENST00000616974 RCBTB1Q8NDN9 531 aa13.21□□□□□ -0.3
LINC00540-202ENST00000616974 ACVR1CQ8NER5 493 aa13.21□□□□□ -0.3
LINC00540-202ENST00000616974 PEX13Q92968 403 aa13.21□□□□□ -0.3
LINC00540-202ENST00000616974 IMP3Q9NV31 184 aaKnown RBP13.21□□□□□ -0.3
LINC00540-202ENST00000616974 CDYLQ9Y232 598 aa13.21□□□□□ -0.3
LINC00540-202ENST00000616974 SDK2Q58EX2 2172 aa13.2□□□□□ -0.3
LINC00540-202ENST00000616974 BHMG1C9JSJ3 638 aaPredicted RBP13.2□□□□□ -0.3
LINC00540-202ENST00000616974 NUDT21O43809 227 aaKnown RBP13.2□□□□□ -0.3
LINC00540-202ENST00000616974 HAUS5O94927 633 aa13.2□□□□□ -0.3
LINC00540-202ENST00000616974 TRIM16O95361 564 aa13.2□□□□□ -0.3
LINC00540-202ENST00000616974 S1PR4O95977 384 aa13.2□□□□□ -0.3
LINC00540-202ENST00000616974 PGAM1P18669 254 aa13.2□□□□□ -0.3
LINC00540-202ENST00000616974 ECHS1P30084 290 aa13.2□□□□□ -0.3
LINC00540-202ENST00000616974 SSTR1P30872 391 aa13.2□□□□□ -0.3
LINC00540-202ENST00000616974 CKAP4Q07065 602 aaKnown RBP13.2□□□□□ -0.3
LINC00540-202ENST00000616974 DMPKQ09013 629 aa13.2□□□□□ -0.3
LINC00540-202ENST00000616974 CAMK2BQ13554 666 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms