RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 SH3BP1Q9Y3L3 701 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 TULP3O75386 442 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 GJB3O75712 270 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 SERPINA1P01009 418 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 SLC11A2P49281 568 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 TTPAP49638 278 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 DEFA1P59665 94 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 DEFA3P59666 94 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 MRPS6P82932 125 aaKnown RBP12.44□□□□□ -0.42
LIG1-221ENST00000613670 PCBP1Q15365 356 aaKnown RBP eCLIP12.44□□□□□ -0.42
LIG1-221ENST00000613670 C6orf183Q5T699 404 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 FBXL22Q6P050 247 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 TXNDC11Q6PKC3 985 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 STX19Q8N4C7 294 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 TMEM199Q8N511 208 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 MFSD2AQ8NA29 543 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 SLC13A3Q8WWT9 602 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 TMEM125Q96AQ2 219 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 REXO5Q96IC2 774 aaKnown RBP12.44□□□□□ -0.42
LIG1-221ENST00000613670 NSMCE3Q96MG7 304 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 ACBD6Q9BR61 282 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 AARSD1Q9BTE6 412 aaKnown RBP12.44□□□□□ -0.42
LIG1-221ENST00000613670 FUNDC2Q9BWH2 189 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 RMI1Q9H9A7 625 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 TRPV2Q9Y5S1 764 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 GPC6Q9Y625 555 aaPredicted RBP12.44□□□□□ -0.42
LIG1-221ENST00000613670 A0A0U1RQS6 177 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 KRT6AP02538 564 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 KRT6BP04259 564 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 OPRL1P41146 370 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 MAGEA8P43361 318 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 KRT6CP48668 564 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 FAM171A1Q5VUB5 890 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 FAM151BQ6UXP7 276 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 HACD2Q6Y1H2 254 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 ITIH5Q86UX2 942 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 HS6ST3Q8IZP7 471 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 TAGAPQ8N103 731 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 TMEM132CQ8N3T6 1108 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 SVOPQ8N4V2 548 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 TBC1D15Q8TC07 691 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 NUDT8Q8WV74 236 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 PARK7Q99497 189 aaKnown RBP12.44□□□□□ -0.42
LIG1-221ENST00000613670 SLC2A11Q9BYW1 496 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 NMUR1Q9HB89 426 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 SDR39U1Q9NRG7 319 aaPredicted RBP12.44□□□□□ -0.42
LIG1-221ENST00000613670 SACM1LQ9NTJ5 587 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 TMEM9Q9P0T7 183 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 DNAJB9Q9UBS3 223 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 PCDHB5Q9Y5E4 795 aa12.44□□□□□ -0.42
LIG1-221ENST00000613670 ZNF99A8MXY4 864 aaPredicted RBP12.43□□□□□ -0.42
LIG1-221ENST00000613670 NBNO60934 754 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 INMTO95050 263 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 OTCP00480 354 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 MBL2P11226 248 aaPredicted RBP12.43□□□□□ -0.42
LIG1-221ENST00000613670 AGXTP21549 392 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 ATP4BP51164 291 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 TAF10Q12962 218 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 C6orf141Q5SZD1 244 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 PM20D1Q6GTS8 502 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 ANKRD26P1Q6NSI1 321 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 MAMDC4Q6UXC1 1216 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 EPHX4Q8IUS5 362 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 CARNMT1Q8N4J0 409 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 CEP44Q9C0F1 390 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 EPS8L2Q9H6S3 715 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 TLR8Q9NR97 1041 aaKnown RBP12.43□□□□□ -0.42
LIG1-221ENST00000613670 TREX1Q9NSU2 369 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 TMEM30AQ9NV96 361 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 TMLHEQ9NVH6 421 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 GJD2Q9UKL4 321 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 ZNF490Q9ULM2 529 aaPredicted RBP12.43□□□□□ -0.42
LIG1-221ENST00000613670 SIPA1L1O43166 1804 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 SNPHO15079 494 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 OR1I1O60431 355 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 SKIV2LQ15477 1246 aaKnown RBP12.43□□□□□ -0.42
LIG1-221ENST00000613670 TAF1CQ15572 869 aaPredicted RBP12.43□□□□□ -0.42
LIG1-221ENST00000613670 CCDC85BQ15834 202 aaPredicted RBP12.43□□□□□ -0.42
LIG1-221ENST00000613670 PRR23BQ6ZRT6 265 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 NECAB2Q7Z6G3 386 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 SLC44A2Q8IWA5 706 aaPredicted RBP12.43□□□□□ -0.42
LIG1-221ENST00000613670 LIX1Q8N485 282 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 ABHD11Q8NFV4 315 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 S100ZQ8WXG8 99 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 IMP4Q96G21 291 aaKnown RBP12.43□□□□□ -0.42
LIG1-221ENST00000613670 ASB8Q9H765 288 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 REEP1Q9H902 201 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 ITM2CQ9NQX7 267 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 LRFN2Q9ULH4 789 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 ZNF510Q9Y2H8 683 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 TNPO3Q9Y5L0 923 aaKnown RBP12.43□□□□□ -0.42
LIG1-221ENST00000613670 RPL9P32969 192 aaKnown RBP12.43□□□□□ -0.42
LIG1-221ENST00000613670 MAP2K4P45985 399 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 HTR6P50406 440 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 PLA2G16P53816 162 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 NPTX1Q15818 432 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 MSANTD2Q6P1R3 559 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 ENPP6Q6UWR7 440 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 TMC5Q6UXY8 1006 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 Q6ZNX1 250 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms