RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 SGCGQ13326 291 aa14.02□□□□□ -0.16
USP39-220ENST00000613444 TTLL9Q3SXZ7 439 aa14.02□□□□□ -0.16
USP39-220ENST00000613444 PLEKHS1Q5SXH7 462 aa14.02□□□□□ -0.16
USP39-220ENST00000613444 TRIM69Q86WT6 500 aa14.02□□□□□ -0.16
USP39-220ENST00000613444 PPP1R14CQ8TAE6 165 aa14.02□□□□□ -0.16
USP39-220ENST00000613444 DLG3Q92796 817 aa14.02□□□□□ -0.16
USP39-220ENST00000613444 CLDN23Q96B33 292 aa14.02□□□□□ -0.16
USP39-220ENST00000613444 ZCCHC2Q9C0B9 1178 aaKnown RBP14.02□□□□□ -0.16
USP39-220ENST00000613444 BTBD1Q9H0C5 482 aa14.02□□□□□ -0.16
USP39-220ENST00000613444 TBC1D17Q9HA65 648 aa14.02□□□□□ -0.16
USP39-220ENST00000613444 CYP4F12Q9HCS2 524 aa14.02□□□□□ -0.16
USP39-220ENST00000613444 RNF112Q9ULX5 631 aa14.02□□□□□ -0.16
USP39-220ENST00000613444 F8W8V4 182 aa14.02□□□□□ -0.17
USP39-220ENST00000613444 VEGFDO43915 354 aa14.02□□□□□ -0.17
USP39-220ENST00000613444 ATG13O75143 517 aa14.02□□□□□ -0.17
USP39-220ENST00000613444 H2AFYO75367 372 aaKnown RBP14.02□□□□□ -0.17
USP39-220ENST00000613444 SLCO2B1O94956 709 aa14.02□□□□□ -0.17
USP39-220ENST00000613444 ABCE1P61221 599 aaKnown RBP14.02□□□□□ -0.17
USP39-220ENST00000613444 SF3A3Q12874 501 aaKnown RBP eCLIP14.02□□□□□ -0.17
USP39-220ENST00000613444 OVGP1Q12889 678 aa14.02□□□□□ -0.17
USP39-220ENST00000613444 ANO7Q6IWH7 933 aa14.02□□□□□ -0.17
USP39-220ENST00000613444 C11orf96Q7Z7L8 435 aa14.02□□□□□ -0.17
USP39-220ENST00000613444 OR2T34Q8NGX1 318 aa14.02□□□□□ -0.17
USP39-220ENST00000613444 ELMO1Q92556 727 aa14.02□□□□□ -0.17
USP39-220ENST00000613444 GRAMD1AQ96CP6 724 aa14.02□□□□□ -0.17
USP39-220ENST00000613444 CCDC126Q96EE4 140 aa14.02□□□□□ -0.17
USP39-220ENST00000613444 PHF21BQ96EK2 531 aa14.02□□□□□ -0.17
USP39-220ENST00000613444 LINC00615Q96LM1 132 aaPredicted RBP14.02□□□□□ -0.17
USP39-220ENST00000613444 CCM2Q9BSQ5 444 aa14.02□□□□□ -0.17
USP39-220ENST00000613444 DRC3Q9H069 523 aa14.02□□□□□ -0.17
USP39-220ENST00000613444 SGK2Q9HBY8 427 aa14.02□□□□□ -0.17
USP39-220ENST00000613444 NCKIPSDQ9NZQ3 722 aa14.02□□□□□ -0.17
USP39-220ENST00000613444 TSR3Q9UJK0 312 aaKnown RBP14.02□□□□□ -0.17
USP39-220ENST00000613444 ADAMTS6Q9UKP5 1117 aa14.02□□□□□ -0.17
USP39-220ENST00000613444 TMEM98Q9Y2Y6 226 aa14.02□□□□□ -0.17
USP39-220ENST00000613444 OR1A2Q9Y585 309 aa14.02□□□□□ -0.17
USP39-220ENST00000613444 TMEM114B3SHH9 223 aa14.01□□□□□ -0.17
USP39-220ENST00000613444 CHUKO15111 745 aa14.01□□□□□ -0.17
USP39-220ENST00000613444 KPNA5O15131 536 aa14.01□□□□□ -0.17
USP39-220ENST00000613444 TGDSO95455 350 aa14.01□□□□□ -0.17
USP39-220ENST00000613444 TPBGLP0DKB5 382 aa14.01□□□□□ -0.17
USP39-220ENST00000613444 ENO3P13929 434 aaPredicted RBP14.01□□□□□ -0.17
USP39-220ENST00000613444 HSPA14Q0VDF9 509 aa14.01□□□□□ -0.17
USP39-220ENST00000613444 BOP1Q14137 746 aaKnown RBP14.01□□□□□ -0.17
USP39-220ENST00000613444 GKAP1Q5VSY0 366 aaPredicted RBP14.01□□□□□ -0.17
USP39-220ENST00000613444 RASGRP3Q8IV61 690 aa14.01□□□□□ -0.17
USP39-220ENST00000613444 SLC22A9Q8IVM8 553 aa14.01□□□□□ -0.17
USP39-220ENST00000613444 LSMEM2Q8N112 164 aa14.01□□□□□ -0.17
USP39-220ENST00000613444 MYO1HQ8N1T3 1032 aa14.01□□□□□ -0.17
USP39-220ENST00000613444 LILRA3Q8N6C8 439 aaPredicted RBP14.01□□□□□ -0.17
USP39-220ENST00000613444 PJA1Q8NG27 643 aa14.01□□□□□ -0.17
USP39-220ENST00000613444 EXT2Q93063 718 aa14.01□□□□□ -0.17
USP39-220ENST00000613444 L3HYPDHQ96EM0 354 aa14.01□□□□□ -0.17
USP39-220ENST00000613444 SEC16BQ96JE7 1060 aa14.01□□□□□ -0.17
USP39-220ENST00000613444 HHIPQ96QV1 700 aa14.01□□□□□ -0.17
USP39-220ENST00000613444 FZD3Q9NPG1 666 aa14.01□□□□□ -0.17
USP39-220ENST00000613444 MUTYHQ9UIF7 546 aa14.01□□□□□ -0.17
USP39-220ENST00000613444 GPR34Q9UPC5 381 aa14.01□□□□□ -0.17
USP39-220ENST00000613444 EML5Q05BV3 1969 aa14.01□□□□□ -0.17
USP39-220ENST00000613444 PLXND1Q9Y4D7 1925 aa14□□□□□ -0.17
USP39-220ENST00000613444 SLC5A10A0PJK1 596 aa14□□□□□ -0.17
USP39-220ENST00000613444 SLC31A1O15431 190 aa14□□□□□ -0.17
USP39-220ENST00000613444 LATO43561 262 aa14□□□□□ -0.17
USP39-220ENST00000613444 IMPDH1P20839 514 aa14□□□□□ -0.17
USP39-220ENST00000613444 CCR10P46092 362 aa14□□□□□ -0.17
USP39-220ENST00000613444 TGFBIQ15582 683 aa14□□□□□ -0.17
USP39-220ENST00000613444 FOXR1Q6PIV2 292 aa14□□□□□ -0.17
USP39-220ENST00000613444 SPATA21Q7Z572 469 aa14□□□□□ -0.17
USP39-220ENST00000613444 ADAMTSL2Q86TH1 951 aa14□□□□□ -0.17
USP39-220ENST00000613444 TSTD1Q8NFU3 115 aa14□□□□□ -0.17
USP39-220ENST00000613444 SREK1Q8WXA9 508 aaKnown RBP14□□□□□ -0.17
USP39-220ENST00000613444 CHRDQ9H2X0 955 aa14□□□□□ -0.17
USP39-220ENST00000613444 WDR26Q9H7D7 661 aa14□□□□□ -0.17
USP39-220ENST00000613444 SYCE1LA8MT33 242 aa14□□□□□ -0.17
USP39-220ENST00000613444 SMIM24O75264 130 aa14□□□□□ -0.17
USP39-220ENST00000613444 CHRNGP07510 517 aa14□□□□□ -0.17
USP39-220ENST00000613444 RCN2Q14257 317 aa14□□□□□ -0.17
USP39-220ENST00000613444 PHKG1Q16816 387 aa14□□□□□ -0.17
USP39-220ENST00000613444 PFKFB4Q16877 469 aa14□□□□□ -0.17
USP39-220ENST00000613444 ZNF678Q5SXM1 525 aa14□□□□□ -0.17
USP39-220ENST00000613444 GPSM1Q86YR5 675 aa14□□□□□ -0.17
USP39-220ENST00000613444 PGBD3Q8N328 593 aa14□□□□□ -0.17
USP39-220ENST00000613444 PTGR2Q8N8N7 351 aaPredicted RBP14□□□□□ -0.17
USP39-220ENST00000613444 ASZ1Q8WWH4 475 aa14□□□□□ -0.17
USP39-220ENST00000613444 THOC1Q96FV9 657 aaKnown RBP14□□□□□ -0.17
USP39-220ENST00000613444 ZNF514Q96K75 400 aaPredicted RBP14□□□□□ -0.17
USP39-220ENST00000613444 C1QTNF7Q9BXJ2 289 aa14□□□□□ -0.17
USP39-220ENST00000613444 EBF2Q9HAK2 575 aa14□□□□□ -0.17
USP39-220ENST00000613444 KCNK13Q9HB14 408 aa14□□□□□ -0.17
USP39-220ENST00000613444 LRRC72A6NJI9 287 aa13.99□□□□□ -0.17
USP39-220ENST00000613444 SUPT3HB4E1H0 165 aa13.99□□□□□ -0.17
USP39-220ENST00000613444 NPHS1O60500 1241 aa13.99□□□□□ -0.17
USP39-220ENST00000613444 SUPT3HO75486 399 aa13.99□□□□□ -0.17
USP39-220ENST00000613444 SIX3O95343 332 aaPredicted RBP13.99□□□□□ -0.17
USP39-220ENST00000613444 SEMA4FO95754 770 aa13.99□□□□□ -0.17
USP39-220ENST00000613444 FUCA1P04066 466 aa13.99□□□□□ -0.17
USP39-220ENST00000613444 MPC1LP0DKB6 136 aa13.99□□□□□ -0.17
USP39-220ENST00000613444 HERVK_113P63132 956 aa13.99□□□□□ -0.17
USP39-220ENST00000613444 ASPHQ12797 758 aa13.99□□□□□ -0.17
USP39-220ENST00000613444 UNC50Q53HI1 259 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms