RNA–Protein interactions for RNA: ENST00000611614.4

COPS7B-223, Transcript of COP9 signalosome subunit 7B, human

TSL 3 BASIC

Gene COPS7B, Length 2,468 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COPS7B-223	ENST00000611614	ATXN3	P54252	364 aa	Predicted RBP	13.7	□□□□□ -0.22
COPS7B-223	ENST00000611614	SNRPD1	P62314	119 aa	Known RBP	13.7	□□□□□ -0.22
COPS7B-223	ENST00000611614	ATXN7L2	Q5T6C5	722 aa	Predicted RBP	13.7	□□□□□ -0.22
COPS7B-223	ENST00000611614	KANK2	Q63ZY3	851 aa		13.7	□□□□□ -0.22
COPS7B-223	ENST00000611614	SYCE2	Q6PIF2	218 aa		13.7	□□□□□ -0.22
COPS7B-223	ENST00000611614	NCEH1	Q6PIU2	408 aa		13.7	□□□□□ -0.22
COPS7B-223	ENST00000611614	FAM156A	Q8NDB6	213 aa		13.7	□□□□□ -0.22
COPS7B-223	ENST00000611614	LPCAT1	Q8NF37	534 aa		13.7	□□□□□ -0.22
COPS7B-223	ENST00000611614	CCT7	Q99832	543 aa		13.7	□□□□□ -0.22
COPS7B-223	ENST00000611614	FBRSL1	Q9HCM7	1045 aa	Known RBP	13.7	□□□□□ -0.22
COPS7B-223	ENST00000611614	PNPLA3	Q9NST1	481 aa		13.7	□□□□□ -0.22
COPS7B-223	ENST00000611614	LMCD1	Q9NZU5	365 aa		13.7	□□□□□ -0.22
COPS7B-223	ENST00000611614	CROT	Q9UKG9	612 aa		13.7	□□□□□ -0.22
COPS7B-223	ENST00000611614	CDH7	Q9ULB5	785 aa		13.7	□□□□□ -0.22
COPS7B-223	ENST00000611614	RNF112	Q9ULX5	631 aa		13.7	□□□□□ -0.22
COPS7B-223	ENST00000611614	PCDHGB4	Q9UN71	923 aa		13.7	□□□□□ -0.22
COPS7B-223	ENST00000611614	MYRF	Q9Y2G1	1151 aa		13.7	□□□□□ -0.22
COPS7B-223	ENST00000611614	PCDHGB5	Q9Y5G0	923 aa		13.7	□□□□□ -0.22
COPS7B-223	ENST00000611614	ANKRD36	A6QL64	1941 aa		13.7	□□□□□ -0.22
COPS7B-223	ENST00000611614	HEPACAM2	A8MVW5	462 aa		13.7	□□□□□ -0.22
COPS7B-223	ENST00000611614	SUPT3H	B4E1H0	165 aa		13.7	□□□□□ -0.22
COPS7B-223	ENST00000611614	PPP6C	O00743	305 aa		13.7	□□□□□ -0.22
COPS7B-223	ENST00000611614	SUPT3H	O75486	399 aa		13.7	□□□□□ -0.22
COPS7B-223	ENST00000611614	ALDOC	P09972	364 aa	Known RBP	13.7	□□□□□ -0.22
COPS7B-223	ENST00000611614	LPO	P22079	712 aa	Predicted RBP	13.7	□□□□□ -0.22
COPS7B-223	ENST00000611614	GPX3	P22352	226 aa		13.7	□□□□□ -0.22
COPS7B-223	ENST00000611614	ECT2L	Q008S8	904 aa		13.7	□□□□□ -0.22
COPS7B-223	ENST00000611614	RHD	Q02161	417 aa		13.7	□□□□□ -0.22
COPS7B-223	ENST00000611614	BCL2L1	Q07817	233 aa		13.7	□□□□□ -0.22
COPS7B-223	ENST00000611614	FUT11	Q495W5	492 aa		13.7	□□□□□ -0.22
COPS7B-223	ENST00000611614	CHRDL2	Q6WN34	429 aa		13.7	□□□□□ -0.22
COPS7B-223	ENST00000611614	CARM1	Q86X55	608 aa		13.7	□□□□□ -0.22
COPS7B-223	ENST00000611614	CROCCP3	Q8IVE0	287 aa		13.7	□□□□□ -0.22
COPS7B-223	ENST00000611614	RBM12B	Q8IXT5	1001 aa	Known RBP	13.7	□□□□□ -0.22
COPS7B-223	ENST00000611614	YAF2	Q8IY57	180 aa		13.7	□□□□□ -0.22
COPS7B-223	ENST00000611614	TRIML2	Q8N7C3	387 aa		13.7	□□□□□ -0.22
COPS7B-223	ENST00000611614	TWIST2	Q8WVJ9	160 aa		13.7	□□□□□ -0.22
COPS7B-223	ENST00000611614	RIPOR3	Q96MK2	946 aa		13.7	□□□□□ -0.22
COPS7B-223	ENST00000611614	SPAG4	Q9NPE6	437 aa		13.7	□□□□□ -0.22
COPS7B-223	ENST00000611614	DDX18	Q9NVP1	670 aa	Known RBP	13.7	□□□□□ -0.22
COPS7B-223	ENST00000611614	FAM50B	Q9Y247	325 aa		13.7	□□□□□ -0.22
COPS7B-223	ENST00000611614	HS3ST2	Q9Y278	367 aa		13.7	□□□□□ -0.22
COPS7B-223	ENST00000611614	VPS9D1	Q9Y2B5	631 aa		13.7	□□□□□ -0.22
COPS7B-223	ENST00000611614		A0A0J9YVX5	310 aa		13.69	□□□□□ -0.22
COPS7B-223	ENST00000611614	PIP5K1B	O14986	540 aa		13.69	□□□□□ -0.22
COPS7B-223	ENST00000611614	SMAD6	O43541	496 aa	Known RBP	13.69	□□□□□ -0.22
COPS7B-223	ENST00000611614	CYP17A1	P05093	508 aa		13.69	□□□□□ -0.22
COPS7B-223	ENST00000611614	EEF1D	P29692	281 aa	Known RBP	13.69	□□□□□ -0.22
COPS7B-223	ENST00000611614	ADAR	P55265	1226 aa	Known RBP	13.69	□□□□□ -0.22
COPS7B-223	ENST00000611614	ADAM15	Q13444	863 aa		13.69	□□□□□ -0.22
COPS7B-223	ENST00000611614	GK3P	Q14409	553 aa		13.69	□□□□□ -0.22
COPS7B-223	ENST00000611614	GEN1	Q17RS7	908 aa		13.69	□□□□□ -0.22
COPS7B-223	ENST00000611614	C8orf82	Q6P1X6	216 aa	Predicted RBP	13.69	□□□□□ -0.22
COPS7B-223	ENST00000611614	AMIGO2	Q86SJ2	522 aa		13.69	□□□□□ -0.22
COPS7B-223	ENST00000611614	FBXO39	Q8N4B4	442 aa		13.69	□□□□□ -0.22
COPS7B-223	ENST00000611614	NKAP	Q8N5F7	415 aa	Known RBP	13.69	□□□□□ -0.22
COPS7B-223	ENST00000611614	SNX31	Q8N9S9	440 aa		13.69	□□□□□ -0.22
COPS7B-223	ENST00000611614	OR9I1	Q8NGQ6	314 aa		13.69	□□□□□ -0.22
COPS7B-223	ENST00000611614	NSUN5	Q96P11	429 aa	Known RBP	13.69	□□□□□ -0.22
COPS7B-223	ENST00000611614	LRRC3B	Q96PB8	259 aa		13.69	□□□□□ -0.22
COPS7B-223	ENST00000611614	DNAAF2	Q9NVR5	837 aa	Known RBP	13.69	□□□□□ -0.22
COPS7B-223	ENST00000611614	OAS3	Q9Y6K5	1087 aa	Known RBP	13.69	□□□□□ -0.22
COPS7B-223	ENST00000611614	SYCE1L	A8MT33	242 aa		13.69	□□□□□ -0.22
COPS7B-223	ENST00000611614	BBIP1	A8MTZ0	92 aa		13.69	□□□□□ -0.22
COPS7B-223	ENST00000611614		H3BNH8	94 aa		13.69	□□□□□ -0.22
COPS7B-223	ENST00000611614	BNIP3L	O60238	219 aa		13.69	□□□□□ -0.22
COPS7B-223	ENST00000611614	ECI2	O75521	394 aa		13.69	□□□□□ -0.22
COPS7B-223	ENST00000611614	IMPDH2	P12268	514 aa		13.69	□□□□□ -0.22
COPS7B-223	ENST00000611614	SLC7A1	P30825	629 aa		13.69	□□□□□ -0.22
COPS7B-223	ENST00000611614	RECQL	P46063	649 aa	Predicted RBP	13.69	□□□□□ -0.22
COPS7B-223	ENST00000611614	CSNK1D	P48730	415 aa		13.69	□□□□□ -0.22
COPS7B-223	ENST00000611614	DGKG	P49619	791 aa		13.69	□□□□□ -0.22
COPS7B-223	ENST00000611614	FOXA1	P55317	472 aa		13.69	□□□□□ -0.22
COPS7B-223	ENST00000611614	CLC	Q05315	142 aa		13.69	□□□□□ -0.22
COPS7B-223	ENST00000611614	PDGFRL	Q15198	375 aa		13.69	□□□□□ -0.22
COPS7B-223	ENST00000611614	PTPRN	Q16849	979 aa		13.69	□□□□□ -0.22
COPS7B-223	ENST00000611614	ARMC12	Q5T9G4	340 aa		13.69	□□□□□ -0.22
COPS7B-223	ENST00000611614	IL23R	Q5VWK5	629 aa		13.69	□□□□□ -0.22
COPS7B-223	ENST00000611614	DHRS4L2	Q6PKH6	230 aa		13.69	□□□□□ -0.22
COPS7B-223	ENST00000611614	FUNDC1	Q8IVP5	155 aa		13.69	□□□□□ -0.22
COPS7B-223	ENST00000611614	OR2AP1	Q8NGE2	309 aa		13.69	□□□□□ -0.22
COPS7B-223	ENST00000611614	PBXIP1	Q96AQ6	731 aa		13.69	□□□□□ -0.22
COPS7B-223	ENST00000611614	ISG20	Q96AZ6	181 aa	Known RBP	13.69	□□□□□ -0.22
COPS7B-223	ENST00000611614	LMLN	Q96KR4	655 aa		13.69	□□□□□ -0.22
COPS7B-223	ENST00000611614	SMIM14	Q96QK8	99 aa		13.69	□□□□□ -0.22
COPS7B-223	ENST00000611614	GPR21	Q99679	349 aa		13.69	□□□□□ -0.22
COPS7B-223	ENST00000611614	ATP13A3	Q9H7F0	1226 aa		13.69	□□□□□ -0.22
COPS7B-223	ENST00000611614	TRPV4	Q9HBA0	871 aa		13.69	□□□□□ -0.22
COPS7B-223	ENST00000611614	TUBA8	Q9NY65	449 aa	Predicted RBP	13.69	□□□□□ -0.22
COPS7B-223	ENST00000611614	TMEM181	Q9P2C4	612 aa		13.69	□□□□□ -0.22
COPS7B-223	ENST00000611614	CD300A	Q9UGN4	299 aa		13.69	□□□□□ -0.22
COPS7B-223	ENST00000611614	EVL	Q9UI08	416 aa	Predicted RBP	13.69	□□□□□ -0.22
COPS7B-223	ENST00000611614	IKZF3	Q9UKT9	509 aa		13.69	□□□□□ -0.22
COPS7B-223	ENST00000611614	RNF11	Q9Y3C5	154 aa		13.69	□□□□□ -0.22
COPS7B-223	ENST00000611614	PCDHB9	Q9Y5E1	797 aa		13.69	□□□□□ -0.22
COPS7B-223	ENST00000611614	TCRBV3S1	A0A5B6	114 aa		13.68	□□□□□ -0.22
COPS7B-223	ENST00000611614	ANKRD66	B4E2M5	251 aa		13.68	□□□□□ -0.22
COPS7B-223	ENST00000611614	PFDN6	O15212	129 aa		13.68	□□□□□ -0.22
COPS7B-223	ENST00000611614	HOXC11	O43248	304 aa	Predicted RBP	13.68	□□□□□ -0.22
COPS7B-223	ENST00000611614	BMP10	O95393	424 aa		13.68	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 179 ms