RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 SERPINF1P36955 418 aa4.43□□□□□ -1.7
LINC00540-201ENST00000611481 MAP2K6P52564 334 aa4.43□□□□□ -1.7
LINC00540-201ENST00000611481 ITGA8P53708 1063 aa4.43□□□□□ -1.7
LINC00540-201ENST00000611481 NAPAP54920 295 aa4.43□□□□□ -1.7
LINC00540-201ENST00000611481 PSMC5P62195 406 aa4.43□□□□□ -1.7
LINC00540-201ENST00000611481 RAB1AP62820 205 aa4.43□□□□□ -1.7
LINC00540-201ENST00000611481 RABEP1Q15276 862 aa4.43□□□□□ -1.7
LINC00540-201ENST00000611481 MCMDC2Q4G0Z9 681 aa4.43□□□□□ -1.7
LINC00540-201ENST00000611481 PRR30Q53SZ7 412 aaPredicted RBP4.43□□□□□ -1.7
LINC00540-201ENST00000611481 ANKRD16Q6P6B7 361 aa4.43□□□□□ -1.7
LINC00540-201ENST00000611481 TMCO3Q6UWJ1 677 aa4.43□□□□□ -1.7
LINC00540-201ENST00000611481 ASB18Q6ZVZ8 466 aa4.43□□□□□ -1.7
LINC00540-201ENST00000611481 LRRTM4Q86VH4 590 aa4.43□□□□□ -1.7
LINC00540-201ENST00000611481 LIX1LQ8IVB5 337 aa4.43□□□□□ -1.7
LINC00540-201ENST00000611481 NAGSQ8N159 534 aa4.43□□□□□ -1.7
LINC00540-201ENST00000611481 SLC25A45Q8N413 288 aa4.43□□□□□ -1.7
LINC00540-201ENST00000611481 GALNT16Q8N428 558 aa4.43□□□□□ -1.7
LINC00540-201ENST00000611481 SRBD1Q8N5C6 995 aaKnown RBP4.43□□□□□ -1.7
LINC00540-201ENST00000611481 OR10T2Q8NGX3 314 aa4.43□□□□□ -1.7
LINC00540-201ENST00000611481 OR4C6Q8NH72 309 aa4.43□□□□□ -1.7
LINC00540-201ENST00000611481 CTCFLQ8NI51 663 aaPredicted RBP4.43□□□□□ -1.7
LINC00540-201ENST00000611481 ZNF566Q969W8 418 aa4.43□□□□□ -1.7
LINC00540-201ENST00000611481 C18orf25Q96B23 403 aaPredicted RBP4.43□□□□□ -1.7
LINC00540-201ENST00000611481 APOLD1Q96LR9 279 aa4.43□□□□□ -1.7
LINC00540-201ENST00000611481 NT5C1BQ96P26 610 aa4.43□□□□□ -1.7
LINC00540-201ENST00000611481 CATSPER2Q96P56 530 aa4.43□□□□□ -1.7
LINC00540-201ENST00000611481 ADPGKQ9BRR6 497 aa4.43□□□□□ -1.7
LINC00540-201ENST00000611481 LHX5Q9H2C1 402 aa4.43□□□□□ -1.7
LINC00540-201ENST00000611481 SYNDIG1Q9H7V2 258 aa4.43□□□□□ -1.7
LINC00540-201ENST00000611481 EPB41L5Q9HCM4 733 aa4.43□□□□□ -1.7
LINC00540-201ENST00000611481 PREBQ9HCU5 417 aa4.43□□□□□ -1.7
LINC00540-201ENST00000611481 OLA1Q9NTK5 396 aaKnown RBP4.43□□□□□ -1.7
LINC00540-201ENST00000611481 DNAJC17Q9NVM6 304 aaKnown RBP4.43□□□□□ -1.7
LINC00540-201ENST00000611481 CFAP97Q9P2B7 532 aa4.43□□□□□ -1.7
LINC00540-201ENST00000611481 UXTQ9UBK9 157 aaPredicted RBP4.43□□□□□ -1.7
LINC00540-201ENST00000611481 PISDQ9UG56 409 aa4.43□□□□□ -1.7
LINC00540-201ENST00000611481 A0A1W2PR77 199 aa4.42□□□□□ -1.7
LINC00540-201ENST00000611481 ERICH2A1L162 156 aa4.42□□□□□ -1.7
LINC00540-201ENST00000611481 LRRIQ4A6NIV6 560 aa4.42□□□□□ -1.7
LINC00540-201ENST00000611481 E9PLN8 166 aa4.42□□□□□ -1.7
LINC00540-201ENST00000611481 M0QZQ0 153 aa4.42□□□□□ -1.7
LINC00540-201ENST00000611481 TLR4O00206 839 aa4.42□□□□□ -1.7
LINC00540-201ENST00000611481 SYT5O00445 386 aa4.42□□□□□ -1.7
LINC00540-201ENST00000611481 IFIT3O14879 490 aaKnown RBP4.42□□□□□ -1.7
LINC00540-201ENST00000611481 NPC1O15118 1278 aa4.42□□□□□ -1.7
LINC00540-201ENST00000611481 NVLO15381 856 aaKnown RBP4.42□□□□□ -1.7
LINC00540-201ENST00000611481 NKX2-8O15522 239 aa4.42□□□□□ -1.7
LINC00540-201ENST00000611481 GRID2O43424 1007 aa4.42□□□□□ -1.7
LINC00540-201ENST00000611481 JAK2O60674 1132 aa4.42□□□□□ -1.7
LINC00540-201ENST00000611481 DNAJB5O75953 348 aa4.42□□□□□ -1.7
LINC00540-201ENST00000611481 SIX3O95343 332 aaPredicted RBP4.42□□□□□ -1.7
LINC00540-201ENST00000611481 TACC2O95359 2948 aa4.42□□□□□ -1.7
LINC00540-201ENST00000611481 TBX18O95935 607 aa4.42□□□□□ -1.7
LINC00540-201ENST00000611481 FTLP02792 175 aaPredicted RBP4.42□□□□□ -1.7
LINC00540-201ENST00000611481 CSH1P0DML2 217 aa4.42□□□□□ -1.7
LINC00540-201ENST00000611481 CSH2P0DML3 217 aa4.42□□□□□ -1.7
LINC00540-201ENST00000611481 KLK2P20151 261 aa4.42□□□□□ -1.7
LINC00540-201ENST00000611481 GLRA2P23416 452 aa4.42□□□□□ -1.7
LINC00540-201ENST00000611481 CCKARP32238 428 aa4.42□□□□□ -1.7
LINC00540-201ENST00000611481 GALNSP34059 522 aa4.42□□□□□ -1.7
LINC00540-201ENST00000611481 TUBP50607 506 aa4.42□□□□□ -1.7
LINC00540-201ENST00000611481 PDX1P52945 283 aa4.42□□□□□ -1.7
LINC00540-201ENST00000611481 COPAP53621 1224 aa4.42□□□□□ -1.7
LINC00540-201ENST00000611481 OSTNP61366 133 aa4.42□□□□□ -1.7
LINC00540-201ENST00000611481 DCAF7P61962 342 aa4.42□□□□□ -1.7
LINC00540-201ENST00000611481 KRT83P78385 493 aa4.42□□□□□ -1.7
LINC00540-201ENST00000611481 FMO1Q01740 532 aa4.42□□□□□ -1.7
LINC00540-201ENST00000611481 PRPF4BQ13523 1007 aaKnown RBP4.42□□□□□ -1.7
LINC00540-201ENST00000611481 CKAP5Q14008 2032 aa4.42□□□□□ -1.7
LINC00540-201ENST00000611481 EFR3AQ14156 821 aa4.42□□□□□ -1.7
LINC00540-201ENST00000611481 RAB39AQ14964 217 aa4.42□□□□□ -1.7
LINC00540-201ENST00000611481 PSMD6Q15008 389 aa4.42□□□□□ -1.7
LINC00540-201ENST00000611481 INPP5JQ15735 1006 aaPredicted RBP4.42□□□□□ -1.7
LINC00540-201ENST00000611481 CNGA2Q16280 664 aa4.42□□□□□ -1.7
LINC00540-201ENST00000611481 CDKN3Q16667 212 aa4.42□□□□□ -1.7
LINC00540-201ENST00000611481 DEFB109BQ30KR1 87 aa4.42□□□□□ -1.7
LINC00540-201ENST00000611481 XKR9Q5GH70 373 aa4.42□□□□□ -1.7
LINC00540-201ENST00000611481 TEDDM1Q5T9Z0 273 aa4.42□□□□□ -1.7
LINC00540-201ENST00000611481 MFSD4BQ5TF39 518 aa4.42□□□□□ -1.7
LINC00540-201ENST00000611481 NUGGCQ68CJ6 796 aa4.42□□□□□ -1.7
LINC00540-201ENST00000611481 JMJD6Q6NYC1 403 aaPredicted RBP4.42□□□□□ -1.7
LINC00540-201ENST00000611481 RAB11FIP2Q7L804 512 aa4.42□□□□□ -1.7
LINC00540-201ENST00000611481 EFL1Q7Z2Z2 1120 aaKnown RBP4.42□□□□□ -1.7
LINC00540-201ENST00000611481 TTC7BQ86TV6 843 aa4.42□□□□□ -1.7
LINC00540-201ENST00000611481 CNGA4Q8IV77 575 aa4.42□□□□□ -1.7
LINC00540-201ENST00000611481 RDM1Q8NG50 284 aa4.42□□□□□ -1.7
LINC00540-201ENST00000611481 APOBEC4Q8WW27 367 aaKnown RBP4.42□□□□□ -1.7
LINC00540-201ENST00000611481 CRYGNQ8WXF5 182 aa4.42□□□□□ -1.7
LINC00540-201ENST00000611481 GOLGA1Q92805 767 aa4.42□□□□□ -1.7
LINC00540-201ENST00000611481 HDAC10Q969S8 669 aa4.42□□□□□ -1.7
LINC00540-201ENST00000611481 MAELQ96JY0 434 aaKnown RBP4.42□□□□□ -1.7
LINC00540-201ENST00000611481 ZMAT2Q96NC0 199 aaKnown RBP4.42□□□□□ -1.7
LINC00540-201ENST00000611481 RIT2Q99578 217 aa4.42□□□□□ -1.7
LINC00540-201ENST00000611481 VKORC1Q9BQB6 163 aa4.42□□□□□ -1.7
LINC00540-201ENST00000611481 CNPPD1Q9BV87 410 aa4.42□□□□□ -1.7
LINC00540-201ENST00000611481 CCDC68Q9H2F9 335 aa4.42□□□□□ -1.7
LINC00540-201ENST00000611481 ZNF106Q9H2Y7 1883 aaKnown RBP4.42□□□□□ -1.7
LINC00540-201ENST00000611481 ERVMER34-1Q9H9K5 563 aa4.42□□□□□ -1.7
LINC00540-201ENST00000611481 ZMAT3Q9HA38 289 aaKnown RBP4.42□□□□□ -1.7
LINC00540-201ENST00000611481 EBF2Q9HAK2 575 aa4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms