RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 KLHL6Q8WZ60 621 aa17.21■□□□□ 0.35
SHKBP1-223ENST00000600552 QKIQ96PU8 341 aaKnown RBP eCLIP17.21■□□□□ 0.35
SHKBP1-223ENST00000600552 MAP3K3Q99759 626 aa17.21■□□□□ 0.35
SHKBP1-223ENST00000600552 FAM118BQ9BPY3 351 aa17.21■□□□□ 0.35
SHKBP1-223ENST00000600552 FAM96AQ9H5X1 160 aa17.21■□□□□ 0.35
SHKBP1-223ENST00000600552 TP53TG5Q9Y2B4 290 aa17.21■□□□□ 0.35
SHKBP1-223ENST00000600552 KCTD3Q9Y597 815 aa17.21■□□□□ 0.35
SHKBP1-223ENST00000600552 KCNJ13O60928 360 aa17.2■□□□□ 0.34
SHKBP1-223ENST00000600552 TIAF1O95411 115 aa17.2■□□□□ 0.34
SHKBP1-223ENST00000600552 FGF5P12034 268 aa17.2■□□□□ 0.34
SHKBP1-223ENST00000600552 HLA-DPA1P20036 260 aa17.2■□□□□ 0.34
SHKBP1-223ENST00000600552 NAP1L1P55209 391 aaKnown RBP17.2■□□□□ 0.34
SHKBP1-223ENST00000600552 OLIG2Q13516 323 aa17.2■□□□□ 0.34
SHKBP1-223ENST00000600552 DNASE1L3Q13609 305 aa17.2■□□□□ 0.34
SHKBP1-223ENST00000600552 LONRF2Q1L5Z9 754 aa17.2■□□□□ 0.34
SHKBP1-223ENST00000600552 SKOR2Q2VWA4 1001 aaPredicted RBP17.2■□□□□ 0.34
SHKBP1-223ENST00000600552 DNTTIP2Q5QJE6 756 aaKnown RBP17.2■□□□□ 0.34
SHKBP1-223ENST00000600552 PWWP2BQ6NUJ5 590 aa17.2■□□□□ 0.34
SHKBP1-223ENST00000600552 FAM199XQ6PEV8 388 aaPredicted RBP17.2■□□□□ 0.34
SHKBP1-223ENST00000600552 KLHL35Q6PF15 583 aa17.2■□□□□ 0.34
SHKBP1-223ENST00000600552 FBXO38Q6PIJ6 1188 aa17.2■□□□□ 0.34
SHKBP1-223ENST00000600552 KATNAL2Q8IYT4 538 aa17.2■□□□□ 0.34
SHKBP1-223ENST00000600552 OR4K2Q8NGD2 314 aa17.2■□□□□ 0.34
SHKBP1-223ENST00000600552 KRT35Q92764 455 aa17.2■□□□□ 0.34
SHKBP1-223ENST00000600552 C12orf66Q96MD2 445 aa17.2■□□□□ 0.34
SHKBP1-223ENST00000600552 INSM2Q96T92 566 aaPredicted RBP17.2■□□□□ 0.34
SHKBP1-223ENST00000600552 VAT1Q99536 393 aa17.2■□□□□ 0.34
SHKBP1-223ENST00000600552 ASB8Q9H765 288 aa17.2■□□□□ 0.34
SHKBP1-223ENST00000600552 HRASLS2Q9NWW9 162 aa17.2■□□□□ 0.34
SHKBP1-223ENST00000600552 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP17.2■□□□□ 0.34
SHKBP1-223ENST00000600552 FKBPLQ9UIM3 349 aa17.2■□□□□ 0.34
SHKBP1-223ENST00000600552 TRHDEQ9UKU6 1024 aa17.2■□□□□ 0.34
SHKBP1-223ENST00000600552 SBDSQ9Y3A5 250 aaKnown RBP eCLIP17.2■□□□□ 0.34
SHKBP1-223ENST00000600552 PCDHA13Q9Y5I0 950 aa17.2■□□□□ 0.34
SHKBP1-223ENST00000600552 OR6C74A6NCV1 312 aa17.19■□□□□ 0.34
SHKBP1-223ENST00000600552 HACD1B0YJ81 288 aa17.19■□□□□ 0.34
SHKBP1-223ENST00000600552 PRAMEF1O95521 474 aa17.19■□□□□ 0.34
SHKBP1-223ENST00000600552 MTHFD1P11586 935 aaKnown RBP17.19■□□□□ 0.34
SHKBP1-223ENST00000600552 CTNNA2P26232 953 aa17.19■□□□□ 0.34
SHKBP1-223ENST00000600552 CASRP41180 1078 aa17.19■□□□□ 0.34
SHKBP1-223ENST00000600552 GEMP55040 296 aa17.19■□□□□ 0.34
SHKBP1-223ENST00000600552 TCEAL1Q15170 157 aa17.19■□□□□ 0.34
SHKBP1-223ENST00000600552 SPA17Q15506 151 aa17.19■□□□□ 0.34
SHKBP1-223ENST00000600552 LARP7Q4G0J3 582 aaKnown RBP eCLIP17.19■□□□□ 0.34
SHKBP1-223ENST00000600552 DAAM2Q86T65 1068 aa17.19■□□□□ 0.34
SHKBP1-223ENST00000600552 DDHD1Q8NEL9 900 aa17.19■□□□□ 0.34
SHKBP1-223ENST00000600552 UBXN4Q92575 508 aa17.19■□□□□ 0.34
SHKBP1-223ENST00000600552 RBM41Q96IZ5 413 aaKnown RBP17.19■□□□□ 0.34
SHKBP1-223ENST00000600552 RUFY1Q96T51 708 aa17.19■□□□□ 0.34
SHKBP1-223ENST00000600552 TRIM5Q9C035 493 aa17.19■□□□□ 0.34
SHKBP1-223ENST00000600552 LHX9Q9NQ69 397 aa17.19■□□□□ 0.34
SHKBP1-223ENST00000600552 EPHA6Q9UF33 1036 aa17.19■□□□□ 0.34
SHKBP1-223ENST00000600552 ANAPC2Q9UJX6 822 aa17.19■□□□□ 0.34
SHKBP1-223ENST00000600552 KCND3Q9UK17 655 aa17.19■□□□□ 0.34
SHKBP1-223ENST00000600552 POLHQ9Y253 713 aa17.19■□□□□ 0.34
SHKBP1-223ENST00000600552 KCNMB2Q9Y691 235 aa17.19■□□□□ 0.34
SHKBP1-223ENST00000600552 NBASA2RRP1 2371 aa17.19■□□□□ 0.34
SHKBP1-223ENST00000600552 C2orf81A6NN90 581 aa17.18■□□□□ 0.34
SHKBP1-223ENST00000600552 K7EM74 188 aa17.18■□□□□ 0.34
SHKBP1-223ENST00000600552 GAPDHSO14556 408 aaPredicted RBP17.18■□□□□ 0.34
SHKBP1-223ENST00000600552 LPOP22079 712 aaPredicted RBP17.18■□□□□ 0.34
SHKBP1-223ENST00000600552 RPS18P62269 152 aaKnown RBP17.18■□□□□ 0.34
SHKBP1-223ENST00000600552 GPR19Q15760 415 aa17.18■□□□□ 0.34
SHKBP1-223ENST00000600552 ITPRIPL1Q6GPH6 555 aa17.18■□□□□ 0.34
SHKBP1-223ENST00000600552 CFAP206Q8IYR0 622 aa17.18■□□□□ 0.34
SHKBP1-223ENST00000600552 SPDYE1Q8NFV5 336 aaPredicted RBP17.18■□□□□ 0.34
SHKBP1-223ENST00000600552 DCUN1D1Q96GG9 259 aa17.18■□□□□ 0.34
SHKBP1-223ENST00000600552 AKIRIN1Q9H9L7 192 aaPredicted RBP17.18■□□□□ 0.34
SHKBP1-223ENST00000600552 SOHLH2Q9NX45 425 aa17.18■□□□□ 0.34
SHKBP1-223ENST00000600552 CRLS1Q9UJA2 301 aa17.18■□□□□ 0.34
SHKBP1-223ENST00000600552 MAN2B2Q9Y2E5 1009 aa17.18■□□□□ 0.34
SHKBP1-223ENST00000600552 DOPEY2Q9Y3R5 2298 aa17.17■□□□□ 0.34
SHKBP1-223ENST00000600552 MGAT4DA6NG13 374 aa17.17■□□□□ 0.34
SHKBP1-223ENST00000600552 MKRN2OSH3BPM6 223 aa17.17■□□□□ 0.34
SHKBP1-223ENST00000600552 CCL22O00626 93 aa17.17■□□□□ 0.34
SHKBP1-223ENST00000600552 CREG1O75629 220 aa17.17■□□□□ 0.34
SHKBP1-223ENST00000600552 ANXA9O76027 345 aa17.17■□□□□ 0.34
SHKBP1-223ENST00000600552 MT-ND3P03897 115 aa17.17■□□□□ 0.34
SHKBP1-223ENST00000600552 SLC35G4P0C7Q5 338 aa17.17■□□□□ 0.34
SHKBP1-223ENST00000600552 ATXN8OSP0DMR3 200 aa17.17■□□□□ 0.34
SHKBP1-223ENST00000600552 PSMB4P28070 264 aa17.17■□□□□ 0.34
SHKBP1-223ENST00000600552 OTUD4Q01804 1114 aaKnown RBP17.17■□□□□ 0.34
SHKBP1-223ENST00000600552 DMPKQ09013 629 aa17.17■□□□□ 0.34
SHKBP1-223ENST00000600552 TBX2Q13207 712 aaPredicted RBP17.17■□□□□ 0.34
SHKBP1-223ENST00000600552 SPARCL1Q14515 664 aa17.17■□□□□ 0.34
SHKBP1-223ENST00000600552 PRPSAP1Q14558 356 aa17.17■□□□□ 0.34
SHKBP1-223ENST00000600552 METRNLQ641Q3 311 aa17.17■□□□□ 0.34
SHKBP1-223ENST00000600552 CYB5D1Q6P9G0 228 aa17.17■□□□□ 0.34
SHKBP1-223ENST00000600552 DARS2Q6PI48 645 aaKnown RBP17.17■□□□□ 0.34
SHKBP1-223ENST00000600552 BBS12Q6ZW61 710 aa17.17■□□□□ 0.34
SHKBP1-223ENST00000600552 OOSP2Q86WS3 158 aa17.17■□□□□ 0.34
SHKBP1-223ENST00000600552 TMEM126BQ8IUX1 230 aa17.17■□□□□ 0.34
SHKBP1-223ENST00000600552 TEX19Q8NA77 164 aa17.17■□□□□ 0.34
SHKBP1-223ENST00000600552 OR4E2Q8NGC2 313 aa17.17■□□□□ 0.34
SHKBP1-223ENST00000600552 MR1Q95460 341 aa17.17■□□□□ 0.34
SHKBP1-223ENST00000600552 SLC41A2Q96JW4 573 aa17.17■□□□□ 0.34
SHKBP1-223ENST00000600552 PPM1MQ96MI6 270 aa17.17■□□□□ 0.34
SHKBP1-223ENST00000600552 FERMT1Q9BQL6 677 aa17.17■□□□□ 0.34
SHKBP1-223ENST00000600552 GBA3Q9H227 469 aa17.17■□□□□ 0.34
SHKBP1-223ENST00000600552 FGF21Q9NSA1 209 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms